Wall clock time and date at job start Wed Apr 1 2020 04:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.30000 * 2 1 4 4 C 1.54385 * 110.43155 * 237.76956 * 2 1 3 5 5 N 1.48144 * 104.61907 * 264.94967 * 4 2 1 6 6 C 1.34775 * 127.84272 * 140.39406 * 5 4 2 7 7 O 1.21277 * 120.00383 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99546 * 0.02562 * 6 5 4 9 9 H 1.09002 * 109.42920 * 300.09492 * 8 6 5 10 10 C 1.53121 * 109.42924 * 180.24831 * 8 6 5 11 11 C 1.53497 * 109.30153 * 170.00900 * 10 8 6 12 12 C 1.50718 * 108.04785 * 48.74029 * 11 10 8 13 13 C 1.33862 * 128.68015 * 164.14768 * 12 11 10 14 14 N 1.34421 * 107.79787 * 180.11944 * 13 12 11 15 15 C 1.30795 * 109.31982 * 359.97438 * 14 13 12 16 16 N 1.34407 * 108.55264 * 359.95954 * 15 14 13 17 17 C 1.46469 * 128.44163 * 180.10331 * 16 15 14 18 18 C 1.48151 * 104.32233 * 320.41113 * 5 4 2 19 19 C 1.54277 * 110.34572 * 122.17664 * 2 1 3 20 20 C 1.53002 * 110.34364 * 0.10624 * 19 2 1 21 21 C 1.53001 * 110.34653 * 237.84827 * 19 2 1 22 22 N 1.46498 * 109.47410 * 183.01191 * 21 19 2 23 23 C 1.36933 * 120.00279 * 180.02562 * 22 21 19 24 24 H 1.08005 * 119.99857 * 359.97438 * 23 22 21 25 25 C 1.38810 * 120.00277 * 179.97438 * 23 22 21 26 26 N 1.31616 * 120.00147 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00129 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47143 * 59.99746 * 27 25 23 29 29 H 1.48495 * 109.47059 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47041 * 299.99715 * 27 25 23 31 31 H 1.09002 * 109.46989 * 297.82308 * 1 2 3 32 32 H 1.09002 * 109.47468 * 57.81891 * 1 2 3 33 33 H 1.08999 * 109.47260 * 177.82206 * 1 2 3 34 34 H 1.09004 * 110.40869 * 23.73296 * 4 2 1 35 35 H 1.09003 * 110.41159 * 146.04318 * 4 2 1 36 36 H 1.09001 * 109.49679 * 289.97344 * 10 8 6 37 37 H 1.09005 * 109.49421 * 50.07148 * 10 8 6 38 38 H 1.09006 * 109.77636 * 289.09395 * 11 10 8 39 39 H 1.08998 * 109.72725 * 168.36061 * 11 10 8 40 40 H 1.08001 * 126.10004 * 0.08916 * 13 12 11 41 41 H 1.08002 * 125.71860 * 179.97438 * 15 14 13 42 42 H 1.09006 * 109.59666 * 42.96063 * 17 16 15 43 43 H 1.08996 * 109.73626 * 282.56346 * 17 16 15 44 44 H 1.08992 * 110.40889 * 280.80306 * 18 5 4 45 45 H 1.09000 * 110.40506 * 158.36626 * 18 5 4 46 46 H 1.09004 * 109.47342 * 176.98652 * 20 19 2 47 47 H 1.09000 * 109.46937 * 296.99283 * 20 19 2 48 48 H 1.09001 * 109.46721 * 56.98802 * 20 19 2 49 49 H 1.09006 * 109.46640 * 303.00792 * 21 19 2 50 50 H 1.09001 * 109.47083 * 63.00447 * 21 19 2 51 51 H 0.97003 * 119.99626 * 359.97438 * 22 21 19 52 52 H 0.96997 * 120.00383 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2238 5 7 2.3177 -2.1428 -0.7214 6 6 2.0831 -3.3101 -1.3530 7 8 2.3425 -4.3597 -0.8036 8 6 1.4985 -3.3109 -2.7420 9 1 0.5265 -2.8178 -2.7266 10 6 1.3283 -4.7549 -3.2221 11 6 0.5093 -4.7647 -4.5203 12 6 1.1029 -3.7419 -5.4547 13 6 0.9129 -3.6025 -6.7724 14 7 1.6478 -2.5554 -7.1850 15 6 2.2848 -2.0443 -6.1633 16 7 1.9716 -2.7539 -5.0657 17 6 2.4368 -2.5573 -3.6908 18 6 2.8825 -1.9400 0.6331 19 6 2.0664 -0.7703 1.2243 20 6 0.9063 -1.3038 2.0672 21 6 2.9671 0.1334 2.0687 22 7 3.5226 -0.6360 3.1847 23 6 4.3633 -0.0324 4.0813 24 1 4.6172 1.0110 3.9654 25 6 4.8892 -0.7613 5.1390 26 7 4.5794 -2.0326 5.2806 27 14 6.0367 0.0621 6.3617 28 1 5.3313 1.1912 7.0197 29 1 6.4562 -0.9248 7.3889 30 1 7.2342 0.5747 5.6488 31 1 -0.3633 0.4797 0.9089 32 1 -0.3634 0.5473 -0.8698 33 1 -0.3634 -1.0269 -0.0391 34 1 1.3253 -0.7878 -2.0206 35 1 2.9957 -0.3211 -1.5793 36 1 2.3083 -5.1949 -3.4066 37 1 0.8072 -5.3330 -2.4589 38 1 -0.5278 -4.5078 -4.3041 39 1 0.5569 -5.7529 -4.9779 40 1 0.2819 -4.2213 -7.3933 41 1 2.9505 -1.1945 -6.1963 42 1 2.4252 -1.4943 -3.4494 43 1 3.4501 -2.9449 -3.5861 44 1 3.9374 -1.6733 0.5690 45 1 2.7526 -2.8378 1.2374 46 1 1.2999 -1.8900 2.8976 47 1 0.3251 -0.4676 2.4560 48 1 0.2673 -1.9338 1.4484 49 1 3.7798 0.5157 1.4508 50 1 2.3830 0.9675 2.4574 51 1 3.2943 -1.5730 3.2889 52 1 4.9466 -2.5419 6.0199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181951713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:42 Heat of formation + Delta-G solvation = 19.119034 kcal Electronic energy + Delta-G solvation = -31614.309418 eV Core-core repulsion = 27614.010364 eV Total energy + Delta-G solvation = -4000.299054 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.31566 -41.64014 -39.82328 -37.24673 -36.52756 -34.68992 -33.92454 -33.07573 -31.94285 -31.10907 -29.07683 -28.45543 -27.20999 -26.67221 -25.73855 -24.95356 -23.48081 -22.42115 -22.37263 -20.60481 -20.07227 -19.80135 -19.02463 -18.16759 -18.08814 -17.16804 -16.87875 -16.49615 -16.29755 -15.90754 -15.61578 -15.40893 -15.13034 -14.97449 -14.90465 -14.80024 -14.73876 -14.46245 -14.30555 -14.04976 -13.88115 -13.55280 -13.18331 -13.04475 -13.00932 -12.83243 -12.73157 -12.60231 -12.48478 -12.41060 -12.19530 -12.14083 -12.00362 -11.95670 -11.50114 -11.38632 -11.21586 -11.06872 -10.91684 -10.83338 -10.49411 -9.80361 -9.26621 -8.97214 -7.93711 -5.21868 1.12531 1.38200 1.46782 1.49398 1.55536 1.69452 1.92899 2.21738 2.56333 3.18962 3.27019 3.39985 3.46586 3.53491 3.59638 3.74961 3.80348 3.94750 4.01765 4.10615 4.12209 4.21334 4.26459 4.28490 4.33025 4.35106 4.44368 4.53162 4.59769 4.62453 4.70356 4.76436 4.80693 4.82943 4.88637 4.92203 5.01333 5.02432 5.05912 5.06868 5.13301 5.15110 5.26462 5.38405 5.42450 5.44051 5.51451 5.59257 5.80957 6.27985 6.28130 6.49357 6.99997 7.13410 7.34724 8.12534 8.33479 9.29685 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019781 B = 0.002354 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.157439 B =11893.047709 C =12119.940823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.106 0.894 4 C 0.097 3.903 5 N -0.613 5.613 6 C 0.536 3.464 7 O -0.581 6.581 8 C -0.101 4.101 9 H 0.128 0.872 10 C -0.105 4.105 11 C -0.037 4.037 12 C -0.028 4.028 13 C -0.045 4.045 14 N -0.535 5.535 15 C 0.185 3.815 16 N -0.455 5.455 17 C 0.114 3.886 18 C 0.125 3.875 19 C -0.066 4.066 20 C -0.123 4.123 21 C 0.166 3.834 22 N -0.744 5.744 23 C -0.240 4.240 24 H 0.078 0.922 25 C -0.078 4.078 26 N -0.972 5.972 27 Si 0.971 3.029 28 H -0.277 1.277 29 H -0.300 1.300 30 H -0.277 1.277 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.179 0.821 41 H 0.235 0.765 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.024 0.976 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.028 0.972 50 H 0.027 0.973 51 H 0.373 0.627 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 2.627 -23.520 26.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.124 0.876 4 C -0.024 4.024 5 N -0.345 5.345 6 C 0.325 3.675 7 O -0.460 6.460 8 C -0.122 4.122 9 H 0.146 0.854 10 C -0.143 4.143 11 C -0.075 4.075 12 C -0.142 4.142 13 C -0.192 4.192 14 N -0.254 5.254 15 C -0.097 4.097 16 N -0.138 5.138 17 C -0.008 4.008 18 C 0.002 3.998 19 C -0.068 4.068 20 C -0.180 4.180 21 C 0.040 3.960 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.096 0.904 25 C -0.270 4.270 26 N -0.623 5.623 27 Si 0.800 3.200 28 H -0.203 1.203 29 H -0.227 1.227 30 H -0.204 1.204 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.197 0.803 41 H 0.251 0.749 42 H 0.146 0.854 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.046 0.954 50 H 0.045 0.955 51 H 0.205 0.795 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.995 2.460 -23.905 26.427 hybrid contribution 0.971 -0.669 2.291 2.576 sum -10.024 1.791 -21.615 23.893 Atomic orbital electron populations 1.21897 0.93169 1.01797 1.02837 1.22150 0.97289 0.99864 0.91636 0.87600 1.22936 1.02602 0.79626 0.97259 1.49080 1.61847 1.06601 1.17005 1.20403 0.77602 0.81707 0.87778 1.90747 1.54090 1.32336 1.68857 1.21484 1.01293 0.99928 0.89537 0.85408 1.21476 1.01401 0.93690 0.97715 1.20289 0.99155 0.96855 0.91193 1.21478 1.00170 0.96269 0.96322 1.22138 1.04663 0.99544 0.92827 1.70492 1.12476 1.11879 1.30544 1.25432 1.03196 1.00803 0.80261 1.45441 1.35104 1.24365 1.08896 1.22054 0.97940 1.03500 0.77302 1.22184 0.96943 0.97757 0.82958 1.21573 0.95066 0.94556 0.95565 1.21776 0.97156 1.00677 0.98429 1.20911 0.93977 0.93089 0.88050 1.42615 1.55825 1.10916 1.29303 1.19603 1.18950 0.94976 1.03641 0.90369 1.25551 1.03383 0.96537 1.01532 1.69818 1.50285 1.08596 1.33581 0.85242 0.79079 0.77032 0.78598 1.20310 1.22658 1.20351 0.92419 0.90219 0.93181 0.87072 0.88506 0.92310 0.90171 0.88109 0.87808 0.80336 0.74917 0.85435 0.89621 0.91840 0.93609 0.95646 0.91536 0.92077 0.95367 0.95477 0.79484 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.93 71.98 0.57 -1.43 16 2 C -0.09 -1.52 3.30 -9.89 -0.03 -1.56 16 3 H 0.11 1.55 7.71 -2.38 -0.02 1.53 16 4 C 0.10 1.29 4.92 86.53 0.43 1.71 16 5 N -0.61 -13.67 3.31 -807.94 -2.67 -16.35 16 6 C 0.54 12.91 7.25 87.66 0.64 13.55 16 7 O -0.58 -20.24 16.08 -3.02 -0.05 -20.29 16 8 C -0.10 -1.50 1.85 -11.41 -0.02 -1.52 16 9 H 0.13 1.42 7.92 -2.39 -0.02 1.40 16 10 C -0.10 -1.68 4.69 30.80 0.14 -1.54 16 11 C -0.04 -0.43 6.31 30.02 0.19 -0.25 16 12 C -0.03 -0.44 6.57 40.73 0.27 -0.17 16 13 C -0.05 -0.84 11.84 83.30 0.99 0.15 16 14 N -0.54 -11.38 11.27 -200.96 -2.26 -13.65 16 15 C 0.19 2.85 12.66 180.38 2.28 5.14 16 16 N -0.45 -6.54 3.13 -514.90 -1.61 -8.16 16 17 C 0.11 1.33 5.93 86.47 0.51 1.85 16 18 C 0.12 3.88 5.55 86.54 0.48 4.36 16 19 C -0.07 -1.83 0.73 -51.27 -0.04 -1.87 16 20 C -0.12 -3.68 7.08 71.98 0.51 -3.17 16 21 C 0.17 5.92 4.85 86.38 0.42 6.34 16 22 N -0.74 -36.19 5.12 -343.45 -1.76 -37.95 16 23 C -0.24 -13.03 9.99 84.03 0.84 -12.19 16 24 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 25 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 26 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 27 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 29 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 30 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 31 H 0.06 0.93 6.89 -2.39 -0.02 0.92 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.80 6.72 -2.39 -0.02 0.78 16 34 H 0.11 0.77 6.15 -2.39 -0.01 0.76 16 35 H 0.10 0.97 8.12 -2.39 -0.02 0.95 16 36 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 37 H 0.08 1.47 7.77 -2.38 -0.02 1.45 16 38 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.23 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.13 0.80 5.65 -2.38 -0.01 0.79 16 43 H 0.09 1.15 8.12 -2.39 -0.02 1.14 16 44 H 0.06 2.16 7.86 -2.39 -0.02 2.14 16 45 H 0.05 1.79 7.60 -2.39 -0.02 1.77 16 46 H 0.02 0.95 7.01 -2.38 -0.02 0.93 16 47 H 0.07 1.84 6.98 -2.39 -0.02 1.82 16 48 H 0.06 1.64 6.62 -2.39 -0.02 1.62 16 49 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 50 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.37 19.86 6.28 -92.71 -0.58 19.28 16 52 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -77.73 398.27 2.93 -74.80 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.34 Total: 28.00 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 8.64 Total: 5.38 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -8.03 Total: -135.83 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -77.73 2.93 -74.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181951713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.915 kcal (2) G-P(sol) polarization free energy of solvation -77.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds