Wall clock time and date at job start Wed Apr 1 2020 04:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.39207 * 2 1 4 4 C 1.54788 * 110.52150 * 237.82525 * 2 1 3 5 5 N 1.48145 * 104.42131 * 265.22431 * 4 2 1 6 6 C 1.34777 * 127.83709 * 140.36822 * 5 4 2 7 7 O 1.21277 * 119.99981 * 184.74857 * 6 5 4 8 8 C 1.50703 * 120.00009 * 4.74621 * 6 5 4 9 9 H 1.09005 * 109.43292 * 25.16786 * 8 6 5 10 10 C 1.53120 * 109.43018 * 145.06192 * 8 6 5 11 11 C 1.53492 * 109.30701 * 189.93628 * 10 8 6 12 12 C 1.50711 * 108.06161 * 311.30142 * 11 10 8 13 13 C 1.33860 * 128.67962 * 195.76388 * 12 11 10 14 14 N 1.34426 * 107.79551 * 179.89366 * 13 12 11 15 15 C 1.30784 * 109.32121 * 359.97438 * 14 13 12 16 16 N 1.34403 * 108.55331 * 0.29020 * 15 14 13 17 17 C 1.46473 * 128.44244 * 180.16379 * 16 15 14 18 18 C 1.48144 * 104.32429 * 320.10858 * 5 4 2 19 19 C 1.54291 * 110.34254 * 122.23400 * 2 1 3 20 20 C 1.53002 * 110.43142 * 359.95180 * 19 2 1 21 21 C 1.52999 * 110.34280 * 237.74051 * 19 2 1 22 22 N 1.46498 * 109.47019 * 183.01362 * 21 19 2 23 23 C 1.36933 * 119.99876 * 179.97438 * 22 21 19 24 24 H 1.08006 * 120.00381 * 359.97438 * 23 22 21 25 25 C 1.38807 * 120.00158 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99883 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00028 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47251 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.47046 * 120.00043 * 27 25 23 30 30 H 1.48500 * 109.46838 * 239.99642 * 27 25 23 31 31 H 1.09002 * 109.47061 * 297.76426 * 1 2 3 32 32 H 1.08995 * 109.47472 * 57.76162 * 1 2 3 33 33 H 1.09002 * 109.47399 * 177.77045 * 1 2 3 34 34 H 1.09004 * 110.54026 * 146.48203 * 4 2 1 35 35 H 1.09000 * 110.46436 * 23.92567 * 4 2 1 36 36 H 1.09005 * 109.49662 * 69.99162 * 10 8 6 37 37 H 1.08998 * 109.49841 * 309.89160 * 10 8 6 38 38 H 1.09003 * 109.74523 * 191.65680 * 11 10 8 39 39 H 1.09005 * 109.74367 * 70.94192 * 11 10 8 40 40 H 1.07995 * 126.10582 * 359.88825 * 13 12 11 41 41 H 1.08007 * 125.72372 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.79487 * 77.13007 * 17 16 15 43 43 H 1.09001 * 109.46693 * 316.61669 * 17 16 15 44 44 H 1.08997 * 110.40439 * 158.62982 * 18 5 4 45 45 H 1.08990 * 110.40650 * 280.94547 * 18 5 4 46 46 H 1.08996 * 109.46550 * 177.03972 * 20 19 2 47 47 H 1.08998 * 109.47263 * 297.04123 * 20 19 2 48 48 H 1.08999 * 109.47034 * 57.04705 * 20 19 2 49 49 H 1.09006 * 109.46634 * 303.01187 * 21 19 2 50 50 H 1.08999 * 109.47130 * 63.00317 * 21 19 2 51 51 H 0.97001 * 120.00043 * 359.97438 * 22 21 19 52 52 H 0.97004 * 120.00075 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0726 -0.7719 -1.2270 5 7 2.3138 -2.1439 -0.7227 6 6 2.0772 -3.3105 -1.3546 7 8 2.2490 -4.3609 -0.7732 8 6 1.5991 -3.3099 -2.7838 9 1 1.9167 -2.3885 -3.2721 10 6 2.1984 -4.5101 -3.5220 11 6 1.9170 -4.3738 -5.0247 12 6 0.4543 -4.0553 -5.1993 13 6 -0.2919 -4.1313 -6.3079 14 7 -1.5415 -3.7522 -5.9889 15 6 -1.5895 -3.4454 -4.7184 16 7 -0.3650 -3.6149 -4.1910 17 6 0.0687 -3.4005 -2.8084 18 6 2.8801 -1.9423 0.6313 19 6 2.0664 -0.7716 1.2237 20 6 0.9077 -1.3036 2.0696 21 6 2.9692 0.1305 2.0675 22 7 3.5245 -0.6402 3.1827 23 6 4.3678 -0.0383 4.0781 24 1 4.6239 1.0045 3.9619 25 6 4.8936 -0.7683 5.1351 26 7 4.5812 -2.0390 5.2771 27 14 6.0434 0.0530 6.3570 28 1 6.2337 1.4761 5.9781 29 1 5.4550 -0.0229 7.7184 30 1 7.3559 -0.6417 6.3456 31 1 -0.3633 0.4787 0.9094 32 1 -0.3634 0.5482 -0.8692 33 1 -0.3634 -1.0269 -0.0400 34 1 3.0037 -0.3267 -1.5778 35 1 1.3320 -0.7857 -2.0266 36 1 1.7463 -5.4293 -3.1491 37 1 3.2750 -4.5396 -3.3545 38 1 2.1528 -5.3105 -5.5300 39 1 2.5216 -3.5679 -5.4409 40 1 0.0491 -4.4416 -7.2845 41 1 -2.4652 -3.1079 -4.1839 42 1 -0.2594 -4.2325 -2.1854 43 1 -0.3579 -2.4699 -2.4341 44 1 2.7494 -2.8401 1.2354 45 1 3.9358 -1.6792 0.5664 46 1 1.3028 -1.8895 2.8993 47 1 0.3281 -0.4667 2.4592 48 1 0.2668 -1.9335 1.4527 49 1 3.7818 0.5118 1.4490 50 1 2.3867 0.9654 2.4570 51 1 3.2949 -1.5769 3.2869 52 1 4.9483 -2.5492 6.0160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181951714.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:48 Heat of formation + Delta-G solvation = 37.667891 kcal Electronic energy + Delta-G solvation = -31579.041756 eV Core-core repulsion = 27579.547040 eV Total energy + Delta-G solvation = -3999.494716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.64764 -40.59341 -38.78078 -36.41625 -34.91666 -33.39677 -33.23288 -31.61465 -31.09296 -29.68431 -28.31195 -27.43880 -26.01889 -25.57783 -24.80598 -23.42129 -22.65166 -21.70757 -21.27546 -19.81443 -19.11025 -18.56940 -17.69113 -17.35167 -16.89044 -16.10727 -16.05160 -15.37836 -15.10343 -14.57366 -14.50445 -14.37744 -14.28674 -14.12756 -14.06005 -13.68991 -13.57107 -13.42845 -13.18678 -13.04269 -12.64993 -12.48177 -12.43517 -12.11694 -12.02111 -11.65090 -11.57155 -11.41106 -11.32733 -11.31986 -11.05905 -10.86725 -10.51232 -10.43779 -10.24359 -10.22769 -9.96692 -9.90101 -9.81694 -9.67470 -8.93172 -8.74146 -8.61606 -6.96810 -5.80241 -3.09442 1.76508 2.20213 2.52601 2.82611 2.90966 3.40439 3.45961 3.48412 3.98463 4.03709 4.09045 4.35544 4.43354 4.47210 4.50506 4.60354 4.74358 4.74887 4.78119 4.79975 4.96412 5.05645 5.16138 5.17843 5.29956 5.31821 5.37353 5.40169 5.43197 5.49062 5.56201 5.61964 5.68554 5.76355 5.79360 5.89201 5.94616 6.00248 6.06465 6.07116 6.12207 6.16426 6.35937 6.45568 6.48464 6.59527 6.69265 6.77862 6.89505 7.45758 7.66459 7.79472 7.99033 8.38105 9.49695 10.06299 10.40544 11.42378 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022642 B = 0.002340 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.354376 B =11965.098511 C =12582.068167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.102 3.898 5 N -0.617 5.617 6 C 0.538 3.462 7 O -0.530 6.530 8 C -0.114 4.114 9 H 0.100 0.900 10 C -0.107 4.107 11 C -0.045 4.045 12 C -0.024 4.024 13 C -0.025 4.025 14 N -0.496 5.496 15 C 0.185 3.815 16 N -0.454 5.454 17 C 0.118 3.882 18 C 0.119 3.881 19 C -0.074 4.074 20 C -0.131 4.131 21 C 0.168 3.832 22 N -0.731 5.731 23 C -0.240 4.240 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.169 0.831 41 H 0.205 0.795 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.047 0.953 49 H 0.020 0.980 50 H 0.023 0.977 51 H 0.385 0.615 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 0.140 -21.527 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.021 4.021 5 N -0.350 5.350 6 C 0.325 3.675 7 O -0.406 6.406 8 C -0.136 4.136 9 H 0.118 0.882 10 C -0.146 4.146 11 C -0.083 4.083 12 C -0.138 4.138 13 C -0.172 4.172 14 N -0.215 5.215 15 C -0.097 4.097 16 N -0.137 5.137 17 C -0.005 4.005 18 C -0.003 4.003 19 C -0.075 4.075 20 C -0.188 4.188 21 C 0.040 3.960 22 N -0.376 5.376 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.186 0.814 41 H 0.221 0.779 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.038 0.962 50 H 0.041 0.959 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.395 -0.338 -21.569 23.946 hybrid contribution 1.239 0.273 1.444 1.922 sum -9.156 -0.065 -20.125 22.110 Atomic orbital electron populations 1.21909 0.94525 1.01677 1.01813 1.22206 0.96201 0.99623 0.93643 0.89229 1.22629 1.00635 0.81921 0.96914 1.49075 1.62567 1.05147 1.18254 1.19697 0.78174 0.82556 0.87058 1.90764 1.52283 1.30359 1.67160 1.21576 0.94797 1.02541 0.94696 0.88219 1.21541 1.02303 0.97119 0.93594 1.20257 0.88664 1.02989 0.96426 1.21201 0.94981 1.08407 0.89200 1.21831 0.89669 1.07401 0.98347 1.70509 1.21342 1.17891 1.11714 1.24819 0.88533 1.05439 0.90915 1.45376 1.09705 1.49509 1.09139 1.21818 0.94012 1.04069 0.80610 1.22530 0.97333 0.99139 0.81285 1.21701 0.96258 0.95103 0.94471 1.21857 0.96796 1.00750 0.99427 1.20716 0.93312 0.92843 0.89146 1.42392 1.55824 1.11070 1.28267 1.19236 1.19502 0.94735 1.03692 0.91176 1.24742 1.01029 0.95916 0.99200 1.69666 1.48389 1.07059 1.32849 0.86138 0.80503 0.78344 0.81305 1.20591 1.21881 1.21885 0.91634 0.93153 0.92589 0.90660 0.90786 0.90104 0.89853 0.88913 0.89801 0.81397 0.77882 0.88687 0.88519 0.89506 0.90182 0.91510 0.92425 0.93433 0.96218 0.95930 0.78081 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.95 37.16 0.30 -0.96 16 2 C -0.10 -1.00 3.31 -89.00 -0.29 -1.29 16 3 H 0.09 0.88 7.71 -51.93 -0.40 0.48 16 4 C 0.10 0.93 6.17 -2.20 -0.01 0.91 16 5 N -0.62 -7.46 3.31 -169.06 -0.56 -8.02 16 6 C 0.54 6.71 6.87 -10.98 -0.08 6.64 16 7 O -0.53 -8.89 16.70 5.56 0.09 -8.79 16 8 C -0.11 -0.99 1.98 -91.54 -0.18 -1.17 16 9 H 0.10 0.74 6.97 -51.93 -0.36 0.38 16 10 C -0.11 -0.91 4.78 -26.41 -0.13 -1.04 16 11 C -0.05 -0.31 6.31 -27.62 -0.17 -0.49 16 12 C -0.02 -0.21 6.57 -81.73 -0.54 -0.75 16 13 C -0.03 -0.25 11.84 -17.95 -0.21 -0.47 16 14 N -0.50 -5.75 11.27 -14.87 -0.17 -5.92 16 15 C 0.18 1.71 12.66 -90.72 -1.15 0.56 16 16 N -0.45 -4.01 3.13 -114.06 -0.36 -4.36 16 17 C 0.12 0.92 6.28 -3.89 -0.02 0.90 16 18 C 0.12 1.82 5.56 -2.41 -0.01 1.80 16 19 C -0.07 -1.05 0.73 -153.10 -0.11 -1.16 16 20 C -0.13 -1.93 7.08 37.16 0.26 -1.66 16 21 C 0.17 3.05 4.85 -4.04 -0.02 3.03 16 22 N -0.73 -17.39 5.12 -59.91 -0.31 -17.69 16 23 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 24 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 27 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 31 H 0.06 0.62 6.89 -51.93 -0.36 0.26 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.51 6.73 -51.93 -0.35 0.16 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.51 6.87 -51.93 -0.36 0.15 16 36 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 37 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.20 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.09 0.82 8.12 -51.93 -0.42 0.39 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.57 7.56 -51.93 -0.39 1.18 16 45 H 0.08 1.34 7.87 -51.93 -0.41 0.93 16 46 H 0.07 1.19 6.99 -51.93 -0.36 0.83 16 47 H 0.06 0.80 6.99 -51.93 -0.36 0.44 16 48 H 0.05 0.63 6.62 -51.93 -0.34 0.29 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.38 9.73 6.27 -40.82 -0.26 9.47 16 52 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 402.96 15.07 6.07 6.07 Total: -1.00 -33.75 402.96 -10.72 -44.46 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.57 Total: 6.46 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.62 Total: -2.24 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.67 Total: -63.00 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.75 -10.72 -44.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181951714.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.130 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds