Wall clock time and date at job start Wed Apr 1 2020 04:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.39207 * 2 1 4 4 C 1.54788 * 110.52150 * 237.82525 * 2 1 3 5 5 N 1.48145 * 104.42131 * 265.22431 * 4 2 1 6 6 C 1.34777 * 127.83709 * 140.36822 * 5 4 2 7 7 O 1.21277 * 119.99981 * 184.74857 * 6 5 4 8 8 C 1.50703 * 120.00009 * 4.74621 * 6 5 4 9 9 H 1.09005 * 109.43292 * 25.16786 * 8 6 5 10 10 C 1.53120 * 109.43018 * 145.06192 * 8 6 5 11 11 C 1.53492 * 109.30701 * 189.93628 * 10 8 6 12 12 C 1.50711 * 108.06161 * 311.30142 * 11 10 8 13 13 C 1.33860 * 128.67962 * 195.76388 * 12 11 10 14 14 N 1.34426 * 107.79551 * 179.89366 * 13 12 11 15 15 C 1.30784 * 109.32121 * 359.97438 * 14 13 12 16 16 N 1.34403 * 108.55331 * 0.29020 * 15 14 13 17 17 C 1.46473 * 128.44244 * 180.16379 * 16 15 14 18 18 C 1.48144 * 104.32429 * 320.10858 * 5 4 2 19 19 C 1.54291 * 110.34254 * 122.23400 * 2 1 3 20 20 C 1.53002 * 110.43142 * 359.95180 * 19 2 1 21 21 C 1.52999 * 110.34280 * 237.74051 * 19 2 1 22 22 N 1.46498 * 109.47019 * 183.01362 * 21 19 2 23 23 C 1.36933 * 119.99876 * 179.97438 * 22 21 19 24 24 H 1.08006 * 120.00381 * 359.97438 * 23 22 21 25 25 C 1.38807 * 120.00158 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99883 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00028 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47251 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.47046 * 120.00043 * 27 25 23 30 30 H 1.48500 * 109.46838 * 239.99642 * 27 25 23 31 31 H 1.09002 * 109.47061 * 297.76426 * 1 2 3 32 32 H 1.08995 * 109.47472 * 57.76162 * 1 2 3 33 33 H 1.09002 * 109.47399 * 177.77045 * 1 2 3 34 34 H 1.09004 * 110.54026 * 146.48203 * 4 2 1 35 35 H 1.09000 * 110.46436 * 23.92567 * 4 2 1 36 36 H 1.09005 * 109.49662 * 69.99162 * 10 8 6 37 37 H 1.08998 * 109.49841 * 309.89160 * 10 8 6 38 38 H 1.09003 * 109.74523 * 191.65680 * 11 10 8 39 39 H 1.09005 * 109.74367 * 70.94192 * 11 10 8 40 40 H 1.07995 * 126.10582 * 359.88825 * 13 12 11 41 41 H 1.08007 * 125.72372 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.79487 * 77.13007 * 17 16 15 43 43 H 1.09001 * 109.46693 * 316.61669 * 17 16 15 44 44 H 1.08997 * 110.40439 * 158.62982 * 18 5 4 45 45 H 1.08990 * 110.40650 * 280.94547 * 18 5 4 46 46 H 1.08996 * 109.46550 * 177.03972 * 20 19 2 47 47 H 1.08998 * 109.47263 * 297.04123 * 20 19 2 48 48 H 1.08999 * 109.47034 * 57.04705 * 20 19 2 49 49 H 1.09006 * 109.46634 * 303.01187 * 21 19 2 50 50 H 1.08999 * 109.47130 * 63.00317 * 21 19 2 51 51 H 0.97001 * 120.00043 * 359.97438 * 22 21 19 52 52 H 0.97004 * 120.00075 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0726 -0.7719 -1.2270 5 7 2.3138 -2.1439 -0.7227 6 6 2.0772 -3.3105 -1.3546 7 8 2.2490 -4.3609 -0.7732 8 6 1.5991 -3.3099 -2.7838 9 1 1.9167 -2.3885 -3.2721 10 6 2.1984 -4.5101 -3.5220 11 6 1.9170 -4.3738 -5.0247 12 6 0.4543 -4.0553 -5.1993 13 6 -0.2919 -4.1313 -6.3079 14 7 -1.5415 -3.7522 -5.9889 15 6 -1.5895 -3.4454 -4.7184 16 7 -0.3650 -3.6149 -4.1910 17 6 0.0687 -3.4005 -2.8084 18 6 2.8801 -1.9423 0.6313 19 6 2.0664 -0.7716 1.2237 20 6 0.9077 -1.3036 2.0696 21 6 2.9692 0.1305 2.0675 22 7 3.5245 -0.6402 3.1827 23 6 4.3678 -0.0383 4.0781 24 1 4.6239 1.0045 3.9619 25 6 4.8936 -0.7683 5.1351 26 7 4.5812 -2.0390 5.2771 27 14 6.0434 0.0530 6.3570 28 1 6.2337 1.4761 5.9781 29 1 5.4550 -0.0229 7.7184 30 1 7.3559 -0.6417 6.3456 31 1 -0.3633 0.4787 0.9094 32 1 -0.3634 0.5482 -0.8692 33 1 -0.3634 -1.0269 -0.0400 34 1 3.0037 -0.3267 -1.5778 35 1 1.3320 -0.7857 -2.0266 36 1 1.7463 -5.4293 -3.1491 37 1 3.2750 -4.5396 -3.3545 38 1 2.1528 -5.3105 -5.5300 39 1 2.5216 -3.5679 -5.4409 40 1 0.0491 -4.4416 -7.2845 41 1 -2.4652 -3.1079 -4.1839 42 1 -0.2594 -4.2325 -2.1854 43 1 -0.3579 -2.4699 -2.4341 44 1 2.7494 -2.8401 1.2354 45 1 3.9358 -1.6792 0.5664 46 1 1.3028 -1.8895 2.8993 47 1 0.3281 -0.4667 2.4592 48 1 0.2668 -1.9335 1.4527 49 1 3.7818 0.5118 1.4490 50 1 2.3867 0.9654 2.4570 51 1 3.2949 -1.5769 3.2869 52 1 4.9483 -2.5492 6.0160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181951714.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:46 Heat of formation + Delta-G solvation = 17.770508 kcal Electronic energy + Delta-G solvation = -31579.904571 eV Core-core repulsion = 27579.547040 eV Total energy + Delta-G solvation = -4000.357531 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.31483 -41.60973 -39.82953 -37.21560 -36.51720 -34.61732 -33.99936 -33.06719 -31.92460 -31.12089 -29.05283 -28.44804 -27.32590 -26.65700 -25.67162 -24.96553 -23.51140 -22.46093 -22.34136 -20.63831 -20.00117 -19.73497 -19.07188 -18.20759 -18.05796 -17.20798 -16.84210 -16.53197 -16.23957 -15.91081 -15.60980 -15.39040 -15.06378 -15.03862 -14.91787 -14.81062 -14.69959 -14.46341 -14.35589 -14.04745 -13.85960 -13.55000 -13.19574 -13.05481 -13.05175 -12.89393 -12.82476 -12.62400 -12.46937 -12.41843 -12.18102 -12.06140 -11.99568 -11.96154 -11.50375 -11.38239 -11.20987 -11.01759 -10.94356 -10.86723 -10.51281 -9.79832 -9.27095 -8.97750 -7.94508 -5.22601 1.11522 1.33033 1.46673 1.47026 1.57060 1.66401 1.98823 2.21025 2.55705 3.21117 3.30354 3.39644 3.44627 3.54155 3.58638 3.74403 3.81406 3.93678 4.00424 4.11958 4.17299 4.18407 4.25255 4.28656 4.33728 4.34735 4.44045 4.53174 4.57605 4.63211 4.71469 4.76652 4.79577 4.83733 4.89306 4.91823 4.97524 5.02269 5.04639 5.06920 5.12944 5.14881 5.26605 5.38810 5.42147 5.44566 5.51589 5.60145 5.80749 6.26722 6.27564 6.49743 6.99884 7.12572 7.34201 8.11732 8.32774 9.29276 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022642 B = 0.002340 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.354376 B =11965.098511 C =12582.068167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.103 0.897 4 C 0.102 3.898 5 N -0.613 5.613 6 C 0.537 3.463 7 O -0.582 6.582 8 C -0.101 4.101 9 H 0.125 0.875 10 C -0.107 4.107 11 C -0.036 4.036 12 C -0.028 4.028 13 C -0.045 4.045 14 N -0.534 5.534 15 C 0.184 3.816 16 N -0.454 5.454 17 C 0.121 3.879 18 C 0.124 3.876 19 C -0.066 4.066 20 C -0.122 4.122 21 C 0.166 3.834 22 N -0.744 5.744 23 C -0.237 4.237 24 H 0.079 0.921 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.971 3.029 28 H -0.263 1.263 29 H -0.296 1.296 30 H -0.297 1.297 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.181 0.819 41 H 0.233 0.767 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.024 0.976 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.027 0.973 50 H 0.028 0.972 51 H 0.373 0.627 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 2.687 -23.875 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.121 0.879 4 C -0.020 4.020 5 N -0.345 5.345 6 C 0.326 3.674 7 O -0.462 6.462 8 C -0.122 4.122 9 H 0.143 0.857 10 C -0.145 4.145 11 C -0.074 4.074 12 C -0.142 4.142 13 C -0.191 4.191 14 N -0.253 5.253 15 C -0.098 4.098 16 N -0.137 5.137 17 C -0.001 4.001 18 C 0.001 3.999 19 C -0.067 4.067 20 C -0.180 4.180 21 C 0.039 3.961 22 N -0.387 5.387 23 C -0.369 4.369 24 H 0.096 0.904 25 C -0.271 4.271 26 N -0.623 5.623 27 Si 0.800 3.200 28 H -0.187 1.187 29 H -0.223 1.223 30 H -0.224 1.224 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.198 0.802 41 H 0.249 0.751 42 H 0.102 0.898 43 H 0.141 0.859 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.043 0.957 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.045 0.955 50 H 0.046 0.954 51 H 0.205 0.795 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.247 2.280 -23.970 26.576 hybrid contribution 1.479 -0.514 2.141 2.652 sum -9.768 1.765 -21.829 23.980 Atomic orbital electron populations 1.21895 0.92871 1.01968 1.02935 1.22217 0.97497 0.99693 0.91499 0.87853 1.22893 1.02447 0.79457 0.97154 1.49109 1.61817 1.06692 1.16873 1.20400 0.77096 0.81672 0.88216 1.90748 1.54473 1.32330 1.68608 1.21515 0.95452 1.03693 0.91572 0.85722 1.21515 1.01918 0.96272 0.94814 1.20286 0.87677 1.04393 0.95034 1.21492 0.95783 1.07885 0.89045 1.22150 0.89592 1.07971 0.99429 1.70490 1.22306 1.19366 1.13158 1.25395 0.89357 1.04501 0.90547 1.45432 1.09691 1.49372 1.09253 1.21833 0.93207 1.05006 0.80090 1.22185 0.96848 0.97862 0.83029 1.21569 0.95113 0.94490 0.95551 1.21769 0.97105 1.00701 0.98390 1.20916 0.93976 0.93140 0.88062 1.42631 1.55651 1.10982 1.29394 1.19673 1.18637 0.95011 1.03585 0.90353 1.25553 1.03419 0.96560 1.01556 1.69836 1.50259 1.08619 1.33577 0.85105 0.78036 0.78156 0.78668 1.18723 1.22331 1.22429 0.92367 0.90107 0.92862 0.89300 0.87066 0.92134 0.90182 0.87719 0.87861 0.80224 0.75111 0.89848 0.85871 0.93514 0.92051 0.95694 0.91469 0.91911 0.95547 0.95400 0.79464 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.95 71.98 0.57 -1.30 16 2 C -0.09 -1.53 3.31 -9.75 -0.03 -1.57 16 3 H 0.10 1.58 7.71 -2.39 -0.02 1.56 16 4 C 0.10 1.44 6.17 86.67 0.53 1.98 16 5 N -0.61 -13.97 3.31 -807.18 -2.67 -16.64 16 6 C 0.54 12.95 6.87 87.66 0.60 13.55 16 7 O -0.58 -20.25 16.70 -3.02 -0.05 -20.30 16 8 C -0.10 -1.50 1.98 -11.39 -0.02 -1.52 16 9 H 0.12 1.28 6.97 -2.38 -0.02 1.27 16 10 C -0.11 -1.67 4.78 30.80 0.15 -1.52 16 11 C -0.04 -0.41 6.31 30.02 0.19 -0.22 16 12 C -0.03 -0.44 6.57 40.73 0.27 -0.17 16 13 C -0.05 -0.84 11.84 83.30 0.99 0.15 16 14 N -0.53 -11.52 11.27 -200.97 -2.26 -13.78 16 15 C 0.18 2.95 12.66 180.38 2.28 5.23 16 16 N -0.45 -6.81 3.13 -514.78 -1.61 -8.42 16 17 C 0.12 1.56 6.28 86.49 0.54 2.10 16 18 C 0.12 3.89 5.56 86.54 0.48 4.38 16 19 C -0.07 -1.83 0.73 -51.27 -0.04 -1.87 16 20 C -0.12 -3.62 7.08 71.98 0.51 -3.11 16 21 C 0.17 5.94 4.85 86.38 0.42 6.36 16 22 N -0.74 -36.29 5.12 -343.45 -1.76 -38.05 16 23 C -0.24 -12.91 9.99 84.03 0.84 -12.07 16 24 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 25 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 26 N -0.97 -60.05 13.06 21.65 0.28 -59.77 16 27 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 28 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 29 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 30 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 31 H 0.06 0.90 6.89 -2.39 -0.02 0.88 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.76 6.73 -2.39 -0.02 0.74 16 34 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.11 0.83 6.87 -2.39 -0.02 0.82 16 36 H 0.06 1.20 8.11 -2.38 -0.02 1.18 16 37 H 0.08 1.31 8.11 -2.39 -0.02 1.29 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.23 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 43 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.05 1.83 7.56 -2.39 -0.02 1.81 16 45 H 0.06 2.13 7.87 -2.39 -0.02 2.11 16 46 H 0.02 0.93 6.99 -2.39 -0.02 0.91 16 47 H 0.07 1.83 6.99 -2.39 -0.02 1.81 16 48 H 0.06 1.64 6.62 -2.39 -0.02 1.62 16 49 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 50 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.37 19.90 6.27 -92.71 -0.58 19.32 16 52 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -77.66 402.96 3.04 -74.63 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.33 Total: 27.94 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 8.75 Total: 6.35 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -8.03 Total: -136.66 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -77.66 3.04 -74.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181951714.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.397 kcal (2) G-P(sol) polarization free energy of solvation -77.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds