Wall clock time and date at job start Wed Apr 1 2020 04:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.30284 * 2 1 4 4 C 1.54383 * 110.34203 * 237.70697 * 2 1 3 5 5 N 1.48150 * 104.61504 * 217.26479 * 4 2 1 6 6 C 1.34776 * 127.83332 * 219.58934 * 5 4 2 7 7 O 1.21283 * 119.99631 * 180.02562 * 6 5 4 8 8 C 1.50695 * 120.00565 * 359.97438 * 6 5 4 9 9 N 1.46496 * 109.47439 * 180.02562 * 8 6 5 10 10 C 1.34949 * 126.03886 * 124.99893 * 9 8 6 11 11 C 1.35314 * 107.75183 * 179.97438 * 10 9 8 12 12 C 1.50701 * 126.04331 * 180.02562 * 11 10 9 13 13 C 1.52996 * 117.49858 * 188.62509 * 12 11 10 14 14 C 1.52990 * 117.49972 * 120.00391 * 12 11 10 15 15 C 1.39875 * 107.91745 * 0.02562 * 11 10 9 16 16 N 1.30844 * 108.20253 * 359.74011 * 15 11 10 17 17 C 1.48142 * 104.32668 * 39.58496 * 5 4 2 18 18 C 1.54290 * 110.34075 * 122.16793 * 2 1 3 19 19 C 1.53004 * 110.33953 * 359.89710 * 18 2 1 20 20 C 1.52991 * 110.34305 * 237.74404 * 18 2 1 21 21 N 1.46503 * 109.47198 * 180.02562 * 20 18 2 22 22 C 1.36935 * 120.00471 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99558 * 0.02562 * 22 21 20 24 24 C 1.38804 * 120.00279 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00331 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99976 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47296 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47010 * 120.00133 * 26 24 22 29 29 H 1.48504 * 109.47051 * 240.00073 * 26 24 22 30 30 H 1.09001 * 109.46801 * 297.83041 * 1 2 3 31 31 H 1.09001 * 109.46998 * 57.82638 * 1 2 3 32 32 H 1.09000 * 109.47050 * 177.82929 * 1 2 3 33 33 H 1.08999 * 110.40912 * 336.04722 * 4 2 1 34 34 H 1.09002 * 110.40534 * 98.48320 * 4 2 1 35 35 H 1.08999 * 109.47203 * 300.00819 * 8 6 5 36 36 H 1.08999 * 109.46883 * 60.00227 * 8 6 5 37 37 H 1.08008 * 126.12341 * 359.96402 * 10 9 8 38 38 H 1.09005 * 115.54526 * 334.33272 * 12 11 10 39 39 H 1.09004 * 117.50089 * 0.02562 * 13 12 11 40 40 H 1.08999 * 117.49955 * 145.01915 * 13 12 11 41 41 H 1.08998 * 117.50141 * 214.97882 * 14 12 11 42 42 H 1.09001 * 117.50168 * 0.02562 * 14 12 11 43 43 H 1.07999 * 125.89950 * 179.97438 * 15 11 10 44 44 H 1.08998 * 110.41151 * 201.62726 * 17 5 4 45 45 H 1.09009 * 110.40588 * 79.19737 * 17 5 4 46 46 H 1.08998 * 109.47058 * 59.99960 * 19 18 2 47 47 H 1.09008 * 109.46478 * 179.97438 * 19 18 2 48 48 H 1.08997 * 109.47306 * 299.99213 * 19 18 2 49 49 H 1.08998 * 109.47205 * 299.99677 * 20 18 2 50 50 H 1.09002 * 109.47470 * 60.00369 * 20 18 2 51 51 H 0.97003 * 119.99604 * 0.02562 * 21 20 18 52 52 H 0.96998 * 120.00914 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7734 -1.2237 5 7 3.2664 -1.4825 -0.7209 6 6 4.4425 -1.6678 -1.3527 7 8 5.3365 -2.2760 -0.8034 8 6 4.6462 -1.1204 -2.7418 9 7 5.9958 -1.4525 -3.2046 10 6 6.3062 -2.1059 -4.3438 11 6 7.6538 -2.2125 -4.4043 12 6 8.4426 -2.8707 -5.5069 13 6 9.9443 -3.0610 -5.2844 14 6 9.4451 -2.0047 -6.2721 15 6 8.1852 -1.6039 -3.2626 16 7 7.1926 -1.1433 -2.5453 17 6 2.8802 -1.9415 0.6336 18 6 2.0664 -0.7702 1.2246 19 6 0.9061 -1.2990 2.0702 20 6 2.9691 0.1328 2.0673 21 7 3.4676 -0.6167 3.2232 22 6 4.3006 -0.0103 4.1252 23 1 4.5896 1.0208 3.9847 24 6 4.7724 -0.7204 5.2205 25 7 4.4198 -1.9768 5.3920 26 14 5.9081 0.1072 6.4514 27 1 6.1504 1.5118 6.0347 28 1 5.2768 0.0919 7.7954 29 1 7.1996 -0.6242 6.5028 30 1 -0.3633 0.4798 0.9088 31 1 -0.3633 0.5472 -0.8699 32 1 -0.3633 -1.0269 -0.0389 33 1 1.3235 -1.4877 -1.5777 34 1 2.3402 -0.0816 -2.0204 35 1 3.9123 -1.5604 -3.4170 36 1 4.5229 -0.0375 -2.7272 37 1 5.6046 -2.4775 -5.0761 38 1 7.9144 -3.6429 -6.0663 39 1 10.3617 -2.7106 -4.3404 40 1 10.4045 -3.9587 -5.6974 41 1 9.5769 -2.2073 -7.3350 42 1 9.5345 -0.9589 -5.9779 43 1 9.2340 -1.5242 -3.0174 44 1 3.7672 -2.1312 1.2380 45 1 2.2639 -2.8384 0.5696 46 1 0.2941 -1.9705 1.4680 47 1 1.3005 -1.8405 2.9302 48 1 0.2972 -0.4632 2.4148 49 1 3.8111 0.4705 1.4632 50 1 2.3997 0.9961 2.4119 51 1 3.2083 -1.5429 3.3491 52 1 4.7498 -2.4732 6.1572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181952392.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:40 Heat of formation + Delta-G solvation = 95.088611 kcal Electronic energy + Delta-G solvation = -30723.068738 eV Core-core repulsion = 26726.063972 eV Total energy + Delta-G solvation = -3997.004766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.39928 -40.23604 -38.27894 -37.13521 -34.77615 -33.41572 -33.05253 -31.53731 -30.22943 -29.64430 -28.24196 -26.68987 -25.64341 -25.31299 -23.32128 -23.03674 -22.55693 -21.44872 -21.05820 -20.12081 -19.08232 -18.36180 -17.53378 -17.17138 -16.67648 -15.99713 -15.77874 -15.48503 -14.97078 -14.77870 -14.45880 -14.27537 -14.10156 -14.00962 -13.83267 -13.45252 -13.06228 -12.89586 -12.87342 -12.72522 -12.47513 -12.12403 -12.04655 -11.90927 -11.70130 -11.53965 -11.44529 -11.24272 -11.02825 -10.95680 -10.79775 -10.63469 -10.50724 -10.39369 -10.32449 -10.16310 -9.98566 -9.87006 -9.56564 -9.33328 -8.82742 -8.61331 -8.29650 -6.85827 -5.70800 -2.98754 1.77125 2.26954 2.61676 2.69183 3.01635 3.48341 3.54030 3.56170 3.84364 4.18303 4.35553 4.51428 4.56810 4.64063 4.69312 4.74756 4.74924 4.84722 4.88332 4.89198 5.08505 5.20720 5.23457 5.32471 5.34279 5.45650 5.46431 5.54252 5.57029 5.66140 5.69915 5.70188 5.82508 5.90827 5.91888 5.94664 5.99363 6.09135 6.11203 6.16121 6.21498 6.28021 6.42778 6.53794 6.58048 6.70740 6.80663 6.84996 6.89685 7.59535 7.69471 7.76362 8.20759 8.48085 9.59541 10.16203 10.50690 11.52303 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009534 B = 0.002763 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.089674 B =10132.993956 C =12507.331422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.083 0.917 4 C 0.102 3.898 5 N -0.621 5.621 6 C 0.517 3.483 7 O -0.501 6.501 8 C 0.123 3.877 9 N -0.362 5.362 10 C 0.056 3.944 11 C -0.206 4.206 12 C -0.071 4.071 13 C -0.177 4.177 14 C -0.177 4.177 15 C 0.045 3.955 16 N -0.256 5.256 17 C 0.116 3.884 18 C -0.075 4.075 19 C -0.134 4.134 20 C 0.169 3.831 21 N -0.729 5.729 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.172 0.828 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.179 0.821 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.050 0.950 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.017 0.983 50 H 0.020 0.980 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 0.451 -26.355 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.021 4.021 5 N -0.356 5.356 6 C 0.302 3.698 7 O -0.373 6.373 8 C -0.003 4.003 9 N -0.144 5.144 10 C -0.088 4.088 11 C -0.217 4.217 12 C -0.091 4.091 13 C -0.214 4.214 14 C -0.215 4.215 15 C -0.142 4.142 16 N -0.075 5.075 17 C -0.006 4.006 18 C -0.076 4.076 19 C -0.191 4.191 20 C 0.041 3.959 21 N -0.374 5.374 22 C -0.367 4.367 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.189 0.811 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.196 0.804 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.035 0.965 50 H 0.038 0.962 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.208 0.877 -24.903 25.271 hybrid contribution 0.699 -0.289 0.054 0.758 sum -3.509 0.588 -24.848 25.102 Atomic orbital electron populations 1.21895 0.94082 1.02042 1.01866 1.22147 0.96099 0.99774 0.93797 0.89898 1.22558 0.87106 0.95383 0.97034 1.48886 1.12313 1.56152 1.18268 1.19985 0.81275 0.81230 0.87285 1.90852 1.40181 1.39989 1.66322 1.21415 0.80480 1.03012 0.95351 1.47953 1.05322 1.44768 1.16314 1.22133 0.96736 0.98965 0.91009 1.19236 0.92183 1.11056 0.99258 1.20140 0.90370 1.00854 0.97689 1.22962 0.96198 1.00925 1.01274 1.23011 1.04057 0.97076 0.97310 1.23762 0.99013 0.98547 0.92892 1.77627 0.89074 1.22111 1.18674 1.22550 1.00420 0.95728 0.81899 1.21708 0.95978 0.95434 0.94527 1.21868 0.96553 1.00898 0.99804 1.20649 0.93696 0.92931 0.88631 1.42389 1.57229 1.12900 1.24838 1.19230 1.20283 0.95737 1.01455 0.91324 1.24711 1.01092 0.96093 0.99036 1.69653 1.49077 1.08503 1.30965 0.86132 0.80506 0.78418 0.81246 1.20622 1.21937 1.21860 0.91620 0.93057 0.92138 0.90798 0.90805 0.86085 0.86967 0.81089 0.87488 0.88606 0.88735 0.88917 0.88813 0.80412 0.88255 0.91554 0.93128 0.91251 0.92117 0.96524 0.96211 0.78133 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 7.94 37.16 0.30 -0.94 16 2 C -0.10 -1.09 3.31 -89.22 -0.30 -1.38 16 3 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 4 C 0.10 0.97 6.46 -2.41 -0.02 0.95 16 5 N -0.62 -8.71 3.32 -169.31 -0.56 -9.28 16 6 C 0.52 8.15 7.94 -10.99 -0.09 8.07 16 7 O -0.50 -10.84 15.98 5.55 0.09 -10.75 16 8 C 0.12 1.33 5.97 -5.20 -0.03 1.29 16 9 N -0.36 -4.84 3.40 -62.55 -0.21 -5.05 16 10 C 0.06 0.61 11.36 -17.22 -0.20 0.41 16 11 C -0.21 -2.35 5.76 -105.05 -0.61 -2.95 16 12 C -0.07 -0.62 6.25 -91.78 -0.57 -1.20 16 13 C -0.18 -1.41 10.02 -26.74 -0.27 -1.68 16 14 C -0.18 -1.34 10.23 -26.74 -0.27 -1.61 16 15 C 0.05 0.62 11.35 -17.36 -0.20 0.42 16 16 N -0.26 -4.25 11.66 30.63 0.36 -3.90 16 17 C 0.12 1.92 5.92 -2.41 -0.01 1.90 16 18 C -0.08 -1.15 0.73 -153.11 -0.11 -1.26 16 19 C -0.13 -1.94 7.11 37.16 0.26 -1.67 16 20 C 0.17 3.44 4.94 -4.04 -0.02 3.42 16 21 N -0.73 -18.71 4.79 -59.91 -0.29 -19.00 16 22 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 23 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 26 Si 0.91 23.37 29.55 -169.99 -5.02 18.35 16 27 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 30 H 0.06 0.62 6.80 -51.93 -0.35 0.27 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.50 6.76 -51.93 -0.35 0.15 16 33 H 0.07 0.57 7.83 -51.93 -0.41 0.16 16 34 H 0.07 0.50 7.30 -51.93 -0.38 0.12 16 35 H 0.12 0.76 8.07 -51.93 -0.42 0.34 16 36 H 0.11 1.01 7.95 -51.93 -0.41 0.60 16 37 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.79 6.98 -51.93 -0.36 0.43 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.18 2.01 7.19 -52.49 -0.38 1.63 16 44 H 0.10 2.16 6.93 -51.93 -0.36 1.80 16 45 H 0.07 0.99 7.84 -51.92 -0.41 0.59 16 46 H 0.05 0.60 6.76 -51.93 -0.35 0.25 16 47 H 0.07 1.23 6.75 -51.92 -0.35 0.88 16 48 H 0.06 0.84 6.80 -51.93 -0.35 0.48 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.38 10.26 5.99 -40.82 -0.24 10.01 16 52 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 412.71 15.07 6.22 6.22 Total: -1.00 -38.07 412.71 -9.53 -47.59 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.46 Total: 7.80 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.38 Total: -3.70 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: 0.02 Total: -65.50 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -38.07 -9.53 -47.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181952392.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.682 kcal (2) G-P(sol) polarization free energy of solvation -38.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds