Wall clock time and date at job start Wed Apr 1 2020 04:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.30284 * 2 1 4 4 C 1.54383 * 110.34203 * 237.70697 * 2 1 3 5 5 N 1.48150 * 104.61504 * 217.26479 * 4 2 1 6 6 C 1.34776 * 127.83332 * 219.58934 * 5 4 2 7 7 O 1.21283 * 119.99631 * 180.02562 * 6 5 4 8 8 C 1.50695 * 120.00565 * 359.97438 * 6 5 4 9 9 N 1.46496 * 109.47439 * 180.02562 * 8 6 5 10 10 C 1.34949 * 126.03886 * 124.99893 * 9 8 6 11 11 C 1.35314 * 107.75183 * 179.97438 * 10 9 8 12 12 C 1.50701 * 126.04331 * 180.02562 * 11 10 9 13 13 C 1.52996 * 117.49858 * 188.62509 * 12 11 10 14 14 C 1.52990 * 117.49972 * 120.00391 * 12 11 10 15 15 C 1.39875 * 107.91745 * 0.02562 * 11 10 9 16 16 N 1.30844 * 108.20253 * 359.74011 * 15 11 10 17 17 C 1.48142 * 104.32668 * 39.58496 * 5 4 2 18 18 C 1.54290 * 110.34075 * 122.16793 * 2 1 3 19 19 C 1.53004 * 110.33953 * 359.89710 * 18 2 1 20 20 C 1.52991 * 110.34305 * 237.74404 * 18 2 1 21 21 N 1.46503 * 109.47198 * 180.02562 * 20 18 2 22 22 C 1.36935 * 120.00471 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99558 * 0.02562 * 22 21 20 24 24 C 1.38804 * 120.00279 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00331 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99976 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47296 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47010 * 120.00133 * 26 24 22 29 29 H 1.48504 * 109.47051 * 240.00073 * 26 24 22 30 30 H 1.09001 * 109.46801 * 297.83041 * 1 2 3 31 31 H 1.09001 * 109.46998 * 57.82638 * 1 2 3 32 32 H 1.09000 * 109.47050 * 177.82929 * 1 2 3 33 33 H 1.08999 * 110.40912 * 336.04722 * 4 2 1 34 34 H 1.09002 * 110.40534 * 98.48320 * 4 2 1 35 35 H 1.08999 * 109.47203 * 300.00819 * 8 6 5 36 36 H 1.08999 * 109.46883 * 60.00227 * 8 6 5 37 37 H 1.08008 * 126.12341 * 359.96402 * 10 9 8 38 38 H 1.09005 * 115.54526 * 334.33272 * 12 11 10 39 39 H 1.09004 * 117.50089 * 0.02562 * 13 12 11 40 40 H 1.08999 * 117.49955 * 145.01915 * 13 12 11 41 41 H 1.08998 * 117.50141 * 214.97882 * 14 12 11 42 42 H 1.09001 * 117.50168 * 0.02562 * 14 12 11 43 43 H 1.07999 * 125.89950 * 179.97438 * 15 11 10 44 44 H 1.08998 * 110.41151 * 201.62726 * 17 5 4 45 45 H 1.09009 * 110.40588 * 79.19737 * 17 5 4 46 46 H 1.08998 * 109.47058 * 59.99960 * 19 18 2 47 47 H 1.09008 * 109.46478 * 179.97438 * 19 18 2 48 48 H 1.08997 * 109.47306 * 299.99213 * 19 18 2 49 49 H 1.08998 * 109.47205 * 299.99677 * 20 18 2 50 50 H 1.09002 * 109.47470 * 60.00369 * 20 18 2 51 51 H 0.97003 * 119.99604 * 0.02562 * 21 20 18 52 52 H 0.96998 * 120.00914 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7734 -1.2237 5 7 3.2664 -1.4825 -0.7209 6 6 4.4425 -1.6678 -1.3527 7 8 5.3365 -2.2760 -0.8034 8 6 4.6462 -1.1204 -2.7418 9 7 5.9958 -1.4525 -3.2046 10 6 6.3062 -2.1059 -4.3438 11 6 7.6538 -2.2125 -4.4043 12 6 8.4426 -2.8707 -5.5069 13 6 9.9443 -3.0610 -5.2844 14 6 9.4451 -2.0047 -6.2721 15 6 8.1852 -1.6039 -3.2626 16 7 7.1926 -1.1433 -2.5453 17 6 2.8802 -1.9415 0.6336 18 6 2.0664 -0.7702 1.2246 19 6 0.9061 -1.2990 2.0702 20 6 2.9691 0.1328 2.0673 21 7 3.4676 -0.6167 3.2232 22 6 4.3006 -0.0103 4.1252 23 1 4.5896 1.0208 3.9847 24 6 4.7724 -0.7204 5.2205 25 7 4.4198 -1.9768 5.3920 26 14 5.9081 0.1072 6.4514 27 1 6.1504 1.5118 6.0347 28 1 5.2768 0.0919 7.7954 29 1 7.1996 -0.6242 6.5028 30 1 -0.3633 0.4798 0.9088 31 1 -0.3633 0.5472 -0.8699 32 1 -0.3633 -1.0269 -0.0389 33 1 1.3235 -1.4877 -1.5777 34 1 2.3402 -0.0816 -2.0204 35 1 3.9123 -1.5604 -3.4170 36 1 4.5229 -0.0375 -2.7272 37 1 5.6046 -2.4775 -5.0761 38 1 7.9144 -3.6429 -6.0663 39 1 10.3617 -2.7106 -4.3404 40 1 10.4045 -3.9587 -5.6974 41 1 9.5769 -2.2073 -7.3350 42 1 9.5345 -0.9589 -5.9779 43 1 9.2340 -1.5242 -3.0174 44 1 3.7672 -2.1312 1.2380 45 1 2.2639 -2.8384 0.5696 46 1 0.2941 -1.9705 1.4680 47 1 1.3005 -1.8405 2.9302 48 1 0.2972 -0.4632 2.4148 49 1 3.8111 0.4705 1.4632 50 1 2.3997 0.9961 2.4119 51 1 3.2083 -1.5429 3.3491 52 1 4.7498 -2.4732 6.1572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181952392.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:39 Heat of formation + Delta-G solvation = 69.151911 kcal Electronic energy + Delta-G solvation = -30724.193438 eV Core-core repulsion = 26726.063972 eV Total energy + Delta-G solvation = -3998.129466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.31085 -41.37020 -39.50776 -37.81907 -36.53380 -34.79447 -34.04125 -33.17875 -31.28945 -31.04589 -29.25879 -27.97940 -26.81058 -26.58166 -25.15614 -23.81061 -23.18112 -22.63489 -22.09972 -21.00599 -20.10905 -19.76430 -19.13848 -18.30824 -17.78837 -17.03754 -16.76425 -16.70960 -16.31339 -16.09879 -15.75428 -15.33846 -15.23071 -15.13699 -14.96085 -14.79850 -14.58140 -14.32453 -13.95653 -13.69490 -13.38268 -13.24619 -13.07231 -12.95264 -12.91820 -12.85466 -12.63910 -12.61319 -12.30768 -12.28538 -12.08851 -12.00815 -11.76929 -11.61434 -11.38996 -11.29062 -11.18160 -11.17605 -11.09821 -11.01084 -10.35972 -9.77705 -9.13300 -9.04112 -8.01190 -5.28997 0.88662 1.38655 1.41595 1.43880 1.49272 1.50720 1.78854 1.98209 2.49811 3.20234 3.26782 3.32328 3.53750 3.58202 3.68769 3.77907 3.93321 4.00566 4.07037 4.12647 4.15270 4.23470 4.26115 4.28909 4.33982 4.40079 4.53820 4.57993 4.65209 4.70151 4.75694 4.80799 4.85122 4.88237 4.91179 4.99065 5.04086 5.06904 5.14518 5.15138 5.20665 5.31327 5.36070 5.39373 5.41491 5.45648 5.47130 5.65299 5.68636 6.08316 6.21739 6.52366 6.75644 7.07274 7.27810 8.04624 8.27483 9.22652 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009534 B = 0.002763 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.089674 B =10132.993956 C =12507.331422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.079 0.921 4 C 0.102 3.898 5 N -0.619 5.619 6 C 0.505 3.495 7 O -0.578 6.578 8 C 0.128 3.872 9 N -0.371 5.371 10 C 0.066 3.934 11 C -0.218 4.218 12 C -0.077 4.077 13 C -0.185 4.185 14 C -0.167 4.167 15 C 0.032 3.968 16 N -0.326 5.326 17 C 0.117 3.883 18 C -0.068 4.068 19 C -0.126 4.126 20 C 0.169 3.831 21 N -0.739 5.739 22 C -0.245 4.245 23 H 0.069 0.931 24 C -0.076 4.076 25 N -0.968 5.968 26 Si 0.972 3.028 27 H -0.268 1.268 28 H -0.285 1.285 29 H -0.297 1.297 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.180 0.820 36 H 0.134 0.866 37 H 0.220 0.780 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.182 0.818 44 H 0.033 0.967 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.027 0.973 48 H 0.069 0.931 49 H -0.006 1.006 50 H 0.025 0.975 51 H 0.375 0.625 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 1.261 -30.217 31.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.097 0.903 4 C -0.019 4.019 5 N -0.352 5.352 6 C 0.294 3.706 7 O -0.456 6.456 8 C 0.004 3.996 9 N -0.153 5.153 10 C -0.078 4.078 11 C -0.230 4.230 12 C -0.096 4.096 13 C -0.222 4.222 14 C -0.204 4.204 15 C -0.154 4.154 16 N -0.146 5.146 17 C -0.006 4.006 18 C -0.069 4.069 19 C -0.183 4.183 20 C 0.042 3.958 21 N -0.382 5.382 22 C -0.377 4.377 23 H 0.087 0.913 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.801 3.199 27 H -0.192 1.192 28 H -0.212 1.212 29 H -0.224 1.224 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.197 0.803 36 H 0.151 0.849 37 H 0.237 0.763 38 H 0.144 0.856 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.199 0.801 44 H 0.052 0.948 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.046 0.954 48 H 0.088 0.912 49 H 0.011 0.989 50 H 0.043 0.957 51 H 0.208 0.792 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.835 1.750 -28.808 29.660 hybrid contribution 1.491 -0.521 1.236 2.005 sum -5.345 1.229 -27.572 28.112 Atomic orbital electron populations 1.21869 0.91443 1.03169 1.02854 1.22157 0.98126 0.99002 0.91883 0.90259 1.22953 0.85600 0.96358 0.96972 1.49018 1.13457 1.55689 1.17082 1.21046 0.80471 0.80101 0.89009 1.90819 1.42715 1.43562 1.68513 1.21754 0.80696 1.04349 0.92828 1.48159 1.05220 1.45117 1.16824 1.22911 0.97359 0.97016 0.90548 1.19606 0.93031 1.11100 0.99216 1.20247 0.90447 1.01549 0.97372 1.23034 0.96066 1.01822 1.01234 1.23031 1.02856 0.96337 0.98149 1.24048 0.99086 0.98603 0.93700 1.77523 0.91043 1.24891 1.21148 1.22329 0.97996 0.97213 0.83093 1.21614 0.95028 0.94596 0.95701 1.21821 0.96435 1.01404 0.98688 1.20790 0.93762 0.93818 0.87424 1.42583 1.56947 1.12851 1.25865 1.19610 1.20259 0.95832 1.01972 0.91347 1.25562 1.03183 0.96854 1.01241 1.69812 1.50574 1.09911 1.31588 0.85094 0.78011 0.77882 0.78930 1.19228 1.21161 1.22406 0.92558 0.90079 0.91073 0.87374 0.86801 0.80305 0.84852 0.76334 0.85573 0.89769 0.87380 0.86951 0.89773 0.80067 0.94841 0.89867 0.89531 0.95418 0.91250 0.98853 0.95744 0.79157 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.94 71.98 0.57 -1.16 16 2 C -0.09 -1.75 3.31 -9.88 -0.03 -1.78 16 3 H 0.08 1.60 7.71 -2.39 -0.02 1.58 16 4 C 0.10 1.46 6.46 86.53 0.56 2.02 16 5 N -0.62 -16.67 3.32 -807.96 -2.68 -19.35 16 6 C 0.51 15.89 7.94 87.66 0.70 16.59 16 7 O -0.58 -26.67 15.98 -3.04 -0.05 -26.72 16 8 C 0.13 2.40 5.97 85.63 0.51 2.91 16 9 N -0.37 -9.50 3.40 -351.81 -1.19 -10.70 16 10 C 0.07 1.26 11.36 83.54 0.95 2.21 16 11 C -0.22 -4.79 5.76 -20.14 -0.12 -4.91 16 12 C -0.08 -1.21 6.25 -11.54 -0.07 -1.28 16 13 C -0.18 -2.80 10.02 30.59 0.31 -2.49 16 14 C -0.17 -2.24 10.23 30.59 0.31 -1.93 16 15 C 0.03 0.92 11.35 85.24 0.97 1.88 16 16 N -0.33 -11.33 11.66 -57.02 -0.66 -12.00 16 17 C 0.12 3.99 5.92 86.54 0.51 4.50 16 18 C -0.07 -2.07 0.73 -51.27 -0.04 -2.11 16 19 C -0.13 -3.58 7.11 71.98 0.51 -3.06 16 20 C 0.17 7.17 4.94 86.38 0.43 7.60 16 21 N -0.74 -40.25 4.79 -343.47 -1.64 -41.90 16 22 C -0.24 -14.80 9.99 84.03 0.84 -13.96 16 23 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 24 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 25 N -0.97 -62.93 13.06 21.65 0.28 -62.64 16 26 Si 0.97 49.60 29.55 68.60 2.03 51.63 16 27 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 28 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 30 H 0.06 0.85 6.80 -2.39 -0.02 0.84 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.79 6.76 -2.39 -0.02 0.77 16 33 H 0.11 0.94 7.83 -2.39 -0.02 0.92 16 34 H 0.11 0.81 7.30 -2.39 -0.02 0.79 16 35 H 0.18 1.17 8.07 -2.39 -0.02 1.16 16 36 H 0.13 1.93 7.95 -2.39 -0.02 1.91 16 37 H 0.22 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.08 1.45 6.98 -2.39 -0.02 1.43 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.18 4.56 7.19 -2.91 -0.02 4.54 16 44 H 0.03 1.58 6.93 -2.39 -0.02 1.57 16 45 H 0.08 2.50 7.84 -2.38 -0.02 2.48 16 46 H 0.09 1.82 6.76 -2.39 -0.02 1.80 16 47 H 0.03 1.00 6.75 -2.38 -0.02 0.99 16 48 H 0.07 1.83 6.80 -2.39 -0.02 1.82 16 49 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 50 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.38 21.55 5.99 -92.71 -0.55 20.99 16 52 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -94.23 412.71 3.82 -90.41 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.37 Total: 30.48 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 7.37 Total: 0.79 kcal Atomic # 7 Polarization: -140.69 SS G_CDS: -5.90 Total: -146.59 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.03 Total: 51.63 kcal Total: -94.23 3.82 -90.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181952392.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.561 kcal (2) G-P(sol) polarization free energy of solvation -94.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds