Wall clock time and date at job start Wed Apr 1 2020 04:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.39237 * 2 1 4 4 C 1.54385 * 110.34526 * 237.76796 * 2 1 3 5 5 N 1.48142 * 104.62027 * 217.26773 * 4 2 1 6 6 C 1.34778 * 127.83539 * 219.60652 * 5 4 2 7 7 O 1.21287 * 119.99760 * 179.97438 * 6 5 4 8 8 C 1.50696 * 120.00384 * 359.97307 * 6 5 4 9 9 H 1.09001 * 115.54777 * 34.41299 * 8 6 5 10 10 C 1.53002 * 117.50010 * 248.74874 * 8 6 5 11 11 C 1.53002 * 117.50118 * 180.08909 * 8 6 5 12 12 H 1.08990 * 117.49707 * 359.97438 * 11 8 6 13 13 C 1.50695 * 117.49528 * 214.97847 * 11 8 6 14 14 C 1.39879 * 126.04175 * 300.02043 * 13 11 8 15 15 N 1.30837 * 108.19913 * 179.97438 * 14 13 11 16 16 N 1.40075 * 108.21148 * 359.97438 * 15 14 13 17 17 C 1.46496 * 126.04007 * 180.02562 * 16 15 14 18 18 C 1.34954 * 107.92589 * 359.76061 * 16 15 14 19 19 C 1.48146 * 104.32510 * 39.58474 * 5 4 2 20 20 C 1.54285 * 110.34253 * 122.23167 * 2 1 3 21 21 C 1.53010 * 110.43211 * 359.95406 * 20 2 1 22 22 C 1.53001 * 110.34823 * 237.74389 * 20 2 1 23 23 N 1.46496 * 109.47205 * 183.00971 * 22 20 2 24 24 C 1.36945 * 119.99718 * 179.97438 * 23 22 20 25 25 H 1.07997 * 119.99756 * 359.97438 * 24 23 22 26 26 C 1.38805 * 119.99878 * 179.97438 * 24 23 22 27 27 N 1.31624 * 120.00257 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 119.99929 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47187 * 179.97438 * 28 26 24 30 30 H 1.48494 * 109.47141 * 300.00154 * 28 26 24 31 31 H 1.48498 * 109.47018 * 60.00200 * 28 26 24 32 32 H 1.09000 * 109.47163 * 297.76807 * 1 2 3 33 33 H 1.09001 * 109.46960 * 57.76397 * 1 2 3 34 34 H 1.08993 * 109.47097 * 177.76829 * 1 2 3 35 35 H 1.09003 * 110.40738 * 98.47925 * 4 2 1 36 36 H 1.09006 * 110.50491 * 336.10214 * 4 2 1 37 37 H 1.09007 * 117.49518 * 359.97438 * 10 8 6 38 38 H 1.08997 * 117.50411 * 144.99050 * 10 8 6 39 39 H 1.07991 * 125.89649 * 359.95982 * 14 13 11 40 40 H 1.08999 * 109.47726 * 89.97627 * 17 16 15 41 41 H 1.09001 * 109.47319 * 209.97494 * 17 16 15 42 42 H 1.09003 * 109.47395 * 329.97198 * 17 16 15 43 43 H 1.07996 * 126.12851 * 180.23983 * 18 16 15 44 44 H 1.09004 * 110.40446 * 201.63330 * 19 5 4 45 45 H 1.08994 * 110.50742 * 79.24836 * 19 5 4 46 46 H 1.08999 * 109.46720 * 298.46641 * 21 20 2 47 47 H 1.09001 * 109.46702 * 58.46603 * 21 20 2 48 48 H 1.08999 * 109.47065 * 178.46170 * 21 20 2 49 49 H 1.08997 * 109.46922 * 63.00012 * 22 20 2 50 50 H 1.09000 * 109.46483 * 303.00832 * 22 20 2 51 51 H 0.96996 * 120.00499 * 359.97438 * 23 22 20 52 52 H 0.97001 * 119.99885 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0667 -0.7720 -1.2245 5 7 3.2663 -1.4817 -0.7226 6 6 4.4425 -1.6661 -1.3544 7 8 5.3369 -2.2742 -0.8054 8 6 4.6464 -1.1168 -2.7427 9 1 4.1463 -0.1712 -2.9523 10 6 4.7656 -2.1222 -3.8899 11 6 6.0028 -1.3611 -3.4071 12 1 6.7478 -1.9188 -2.8398 13 6 6.5450 -0.2762 -4.3014 14 6 5.9318 0.2219 -5.4557 15 7 6.7019 1.1525 -5.9585 16 7 7.8309 1.2766 -5.1386 17 6 8.9452 2.2058 -5.3412 18 6 7.7079 0.3932 -4.1259 19 6 2.8800 -1.9423 0.6314 20 6 2.0663 -0.7715 1.2237 21 6 0.9076 -1.3035 2.0696 22 6 2.9691 0.1305 2.0675 23 7 3.5243 -0.6401 3.1828 24 6 4.3676 -0.0382 4.0783 25 1 4.6236 1.0046 3.9621 26 6 4.8933 -0.7682 5.1354 27 7 4.5817 -2.0392 5.2768 28 14 6.0441 0.0527 6.3565 29 1 6.4628 -0.9351 7.3832 30 1 7.2418 0.5628 5.6421 31 1 5.3420 1.1832 7.0154 32 1 -0.3633 0.4788 0.9093 33 1 -0.3633 0.5482 -0.8693 34 1 -0.3633 -1.0268 -0.0400 35 1 2.3401 -0.0794 -2.0205 36 1 1.3243 -1.4860 -1.5812 37 1 4.6969 -3.1811 -3.6402 38 1 4.3440 -1.8382 -4.8540 39 1 4.9861 -0.1053 -5.8618 40 1 8.7341 3.1438 -4.8278 41 1 9.8597 1.7695 -4.9393 42 1 9.0711 2.3953 -6.4072 43 1 8.4128 0.2448 -3.3212 44 1 3.7671 -2.1326 1.2356 45 1 2.2644 -2.8395 0.5684 46 1 0.3133 -0.4675 2.4383 47 1 0.2808 -1.9537 1.4592 48 1 1.3033 -1.8684 2.9137 49 1 2.3866 0.9654 2.4570 50 1 3.7818 0.5118 1.4492 51 1 3.2947 -1.5768 3.2871 52 1 4.9493 -2.5494 6.0153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182677999.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:14 Heat of formation + Delta-G solvation = 89.071982 kcal Electronic energy + Delta-G solvation = -30786.109643 eV Core-core repulsion = 26788.843976 eV Total energy + Delta-G solvation = -3997.265667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.49420 -40.23530 -38.64288 -36.35249 -34.67312 -33.27576 -33.15102 -31.48491 -30.38811 -29.57642 -27.47743 -26.86730 -26.00578 -25.52010 -23.61699 -23.12069 -22.90122 -21.22940 -21.01526 -20.00550 -18.89657 -18.25618 -17.58668 -17.11366 -16.52546 -15.82702 -15.62463 -15.44689 -14.86218 -14.65086 -14.55838 -14.34991 -13.94523 -13.80972 -13.53797 -13.33864 -13.10714 -12.98922 -12.96100 -12.73106 -12.62331 -12.51198 -12.03721 -11.89101 -11.76159 -11.49186 -11.36707 -11.17122 -11.03924 -10.93395 -10.76503 -10.72788 -10.55210 -10.39289 -10.27096 -10.15775 -9.85186 -9.66432 -9.58328 -9.52395 -8.80326 -8.47716 -8.41224 -6.84146 -5.69505 -2.97363 1.63291 2.26521 2.38912 2.80183 3.14920 3.48751 3.52794 3.53988 3.91594 4.20651 4.49661 4.61930 4.62511 4.69620 4.72834 4.79988 4.81720 4.88909 4.90409 4.97925 5.06685 5.14547 5.22920 5.37968 5.42491 5.45466 5.49818 5.54627 5.55930 5.62151 5.70745 5.78341 5.81855 5.89027 5.92192 6.03317 6.07791 6.16532 6.17861 6.25491 6.28953 6.39024 6.43351 6.49137 6.62517 6.73646 6.74728 6.84903 6.94509 7.44217 7.75773 7.82733 8.43950 8.49575 9.60568 10.18188 10.52905 11.53454 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009110 B = 0.002851 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.854240 B = 9818.915881 C =11697.971664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.108 3.892 5 N -0.615 5.615 6 C 0.561 3.439 7 O -0.534 6.534 8 C -0.176 4.176 9 H 0.120 0.880 10 C -0.144 4.144 11 C -0.039 4.039 12 H 0.124 0.876 13 C -0.206 4.206 14 C 0.054 3.946 15 N -0.300 5.300 16 N -0.378 5.378 17 C 0.102 3.898 18 C 0.068 3.932 19 C 0.113 3.887 20 C -0.076 4.076 21 C -0.133 4.133 22 C 0.169 3.831 23 N -0.728 5.728 24 C -0.237 4.237 25 H 0.067 0.933 26 C -0.013 4.013 27 N -0.933 5.933 28 Si 0.906 3.094 29 H -0.291 1.291 30 H -0.287 1.287 31 H -0.287 1.287 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.181 0.819 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.177 0.823 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.067 0.933 49 H 0.019 0.981 50 H 0.016 0.984 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 4.300 -23.767 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.099 0.901 4 C -0.016 4.016 5 N -0.348 5.348 6 C 0.349 3.651 7 O -0.411 6.411 8 C -0.198 4.198 9 H 0.138 0.862 10 C -0.181 4.181 11 C -0.059 4.059 12 H 0.142 0.858 13 C -0.217 4.217 14 C -0.132 4.132 15 N -0.121 5.121 16 N -0.160 5.160 17 C -0.040 4.040 18 C -0.079 4.079 19 C -0.009 4.009 20 C -0.077 4.077 21 C -0.191 4.191 22 C 0.042 3.958 23 N -0.373 5.373 24 C -0.368 4.368 25 H 0.085 0.915 26 C -0.209 4.209 27 N -0.582 5.582 28 Si 0.737 3.263 29 H -0.217 1.217 30 H -0.214 1.214 31 H -0.214 1.214 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.198 0.802 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.194 0.806 44 H 0.118 0.882 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.037 0.963 50 H 0.034 0.966 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.569 5.035 -24.403 24.967 hybrid contribution 0.437 -0.238 1.511 1.591 sum -1.132 4.797 -22.892 23.417 Atomic orbital electron populations 1.21883 0.94228 1.01984 1.01733 1.22150 0.95976 0.99736 0.94032 0.90092 1.22471 0.87028 0.95347 0.96734 1.48807 1.12546 1.55675 1.17820 1.19180 0.80429 0.79468 0.85994 1.90744 1.41053 1.42033 1.67226 1.22298 1.03795 1.01897 0.91772 0.86163 1.23020 1.00955 0.97463 0.96682 1.20215 0.90370 0.96976 0.98354 0.85828 1.19277 0.97669 1.04649 1.00139 1.23728 0.99749 0.94775 0.94975 1.77335 0.95848 1.21373 1.17521 1.48439 1.17510 1.30316 1.19720 1.21866 0.85785 0.92124 1.04178 1.22342 0.99479 0.92365 0.93665 1.22538 1.00414 0.95620 0.82374 1.21702 0.95932 0.95526 0.94528 1.21864 0.96625 1.00898 0.99686 1.20641 0.93366 0.92809 0.89018 1.42372 1.55771 1.11014 1.28159 1.19146 1.19579 0.94619 1.03501 0.91463 1.24706 1.01031 0.95908 0.99243 1.69642 1.48574 1.06988 1.32978 0.86281 0.80922 0.78066 0.81001 1.21712 1.21357 1.21383 0.91767 0.93103 0.92154 0.90742 0.91134 0.87962 0.87876 0.80164 0.90667 0.89355 0.89336 0.80601 0.88220 0.91725 0.92253 0.93085 0.91404 0.96286 0.96588 0.78116 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.95 37.16 0.30 -1.07 16 2 C -0.10 -1.20 3.31 -89.22 -0.30 -1.50 16 3 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 4 C 0.11 1.20 6.46 -2.41 -0.02 1.19 16 5 N -0.62 -9.36 3.32 -169.31 -0.56 -9.92 16 6 C 0.56 9.18 7.70 -10.99 -0.08 9.10 16 7 O -0.53 -11.18 16.52 5.55 0.09 -11.09 16 8 C -0.18 -2.10 5.28 -91.77 -0.48 -2.58 16 9 H 0.12 1.27 7.07 -51.93 -0.37 0.91 16 10 C -0.14 -1.36 9.73 -26.69 -0.26 -1.62 16 11 C -0.04 -0.45 5.77 -91.74 -0.53 -0.98 16 12 H 0.12 1.59 7.67 -51.93 -0.40 1.20 16 13 C -0.21 -2.21 5.76 -105.05 -0.61 -2.82 16 14 C 0.05 0.55 11.35 -17.36 -0.20 0.35 16 15 N -0.30 -3.47 12.57 30.62 0.39 -3.09 16 16 N -0.38 -3.74 4.01 -68.16 -0.27 -4.02 16 17 C 0.10 0.58 11.47 59.84 0.69 1.27 16 18 C 0.07 0.68 11.40 -17.22 -0.20 0.48 16 19 C 0.11 1.94 5.88 -2.41 -0.01 1.92 16 20 C -0.08 -1.20 0.73 -153.10 -0.11 -1.31 16 21 C -0.13 -1.99 7.11 37.16 0.26 -1.72 16 22 C 0.17 3.50 4.96 -4.04 -0.02 3.47 16 23 N -0.73 -18.72 4.76 -59.91 -0.29 -19.00 16 24 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 25 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 26 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 27 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 28 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 31 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 32 H 0.06 0.65 6.85 -51.93 -0.36 0.30 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.55 6.72 -51.93 -0.35 0.20 16 35 H 0.07 0.70 6.78 -51.93 -0.35 0.35 16 36 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 37 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 38 H 0.10 0.72 6.98 -51.93 -0.36 0.36 16 39 H 0.18 1.33 7.19 -52.49 -0.38 0.96 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 44 H 0.10 2.19 6.72 -51.93 -0.35 1.85 16 45 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 46 H 0.06 0.84 6.90 -51.93 -0.36 0.49 16 47 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 48 H 0.07 1.21 6.96 -51.93 -0.36 0.85 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.38 10.28 5.98 -40.82 -0.24 10.04 16 52 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 412.55 15.07 6.22 6.22 Total: -1.00 -36.57 412.55 -8.90 -45.47 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -8.36 Total: 8.71 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.81 Total: -3.27 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.01 Total: -64.10 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.57 -8.90 -45.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182677999.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.546 kcal (2) G-P(sol) polarization free energy of solvation -36.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds