Wall clock time and date at job start Wed Apr 1 2020 04:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.38460 * 2 1 4 4 C 1.54388 * 110.34391 * 237.77894 * 2 1 3 5 5 N 1.48145 * 104.61572 * 217.26081 * 4 2 1 6 6 C 1.34777 * 127.83652 * 219.60481 * 5 4 2 7 7 O 1.21282 * 120.00343 * 174.90862 * 6 5 4 8 8 C 1.50706 * 119.99984 * 354.90330 * 6 5 4 9 9 H 1.09000 * 109.42717 * 334.83029 * 8 6 5 10 10 C 1.53028 * 109.42829 * 214.93123 * 8 6 5 11 11 C 1.53373 * 109.74449 * 168.19502 * 10 8 6 12 12 C 1.50951 * 108.20279 * 50.65412 * 11 10 8 13 13 N 1.30128 * 128.28492 * 163.34455 * 12 11 10 14 14 N 1.40312 * 108.12230 * 180.13358 * 13 12 11 15 15 H 0.97005 * 126.00124 * 179.97438 * 14 13 12 16 16 C 1.35194 * 107.99295 * 359.96095 * 14 13 12 17 17 C 1.34576 * 107.61897 * 359.96374 * 16 14 13 18 18 C 1.50882 * 128.32638 * 180.28760 * 17 16 14 19 19 C 1.48139 * 104.32616 * 39.58144 * 5 4 2 20 20 C 1.54283 * 110.34568 * 122.23681 * 2 1 3 21 21 C 1.52998 * 110.43018 * 359.95553 * 20 2 1 22 22 C 1.52999 * 110.34159 * 237.74265 * 20 2 1 23 23 N 1.46505 * 109.46964 * 183.00753 * 22 20 2 24 24 C 1.36932 * 119.99901 * 179.97438 * 23 22 20 25 25 H 1.08004 * 120.00023 * 0.02562 * 24 23 22 26 26 C 1.38813 * 119.99990 * 179.97438 * 24 23 22 27 27 N 1.31617 * 120.00116 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 119.99816 * 180.02562 * 26 24 23 29 29 H 1.48496 * 109.47259 * 269.99773 * 28 26 24 30 30 H 1.48497 * 109.47220 * 30.00566 * 28 26 24 31 31 H 1.48503 * 109.46741 * 150.00184 * 28 26 24 32 32 H 1.08997 * 109.47265 * 297.76106 * 1 2 3 33 33 H 1.09004 * 109.47486 * 57.76780 * 1 2 3 34 34 H 1.08998 * 109.47058 * 177.76585 * 1 2 3 35 35 H 1.08997 * 110.41342 * 98.47340 * 4 2 1 36 36 H 1.09007 * 110.50633 * 336.09055 * 4 2 1 37 37 H 1.08992 * 109.42649 * 288.28771 * 10 8 6 38 38 H 1.09007 * 109.42606 * 48.11621 * 10 8 6 39 39 H 1.09003 * 109.71198 * 170.32755 * 11 10 8 40 40 H 1.08991 * 109.72367 * 290.97350 * 11 10 8 41 41 H 1.08000 * 126.19286 * 179.97438 * 16 14 13 42 42 H 1.08997 * 109.71867 * 43.57370 * 18 17 16 43 43 H 1.09001 * 109.72018 * 282.92693 * 18 17 16 44 44 H 1.09003 * 110.41115 * 201.62754 * 19 5 4 45 45 H 1.09003 * 110.50655 * 79.24974 * 19 5 4 46 46 H 1.09000 * 109.47411 * 298.46603 * 21 20 2 47 47 H 1.09001 * 109.47303 * 58.46374 * 21 20 2 48 48 H 1.09003 * 109.46955 * 178.46364 * 21 20 2 49 49 H 1.08996 * 109.47143 * 63.00945 * 22 20 2 50 50 H 1.08996 * 109.47211 * 303.00982 * 22 20 2 51 51 H 0.96993 * 120.00119 * 0.02562 * 23 22 20 52 52 H 0.96996 * 120.00385 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0667 -0.7718 -1.2246 5 7 3.2664 -1.4815 -0.7229 6 6 4.4426 -1.6657 -1.3547 7 8 5.3674 -2.1924 -0.7731 8 6 4.6085 -1.2174 -2.7839 9 1 3.6343 -1.1946 -3.2722 10 6 5.5248 -2.1964 -3.5213 11 6 5.4668 -1.9245 -5.0296 12 6 5.7001 -0.4498 -5.2523 13 7 6.0240 0.1575 -6.3566 14 7 6.1362 1.5292 -6.0836 15 1 6.3672 2.2209 -6.7233 16 6 5.8657 1.7176 -4.7725 17 6 5.5921 0.5141 -4.2360 18 6 5.2241 0.1872 -2.8097 19 6 2.8802 -1.9421 0.6311 20 6 2.0664 -0.7716 1.2236 21 6 0.9078 -1.3037 2.0694 22 6 2.9692 0.1305 2.0673 23 7 3.5245 -0.6402 3.1827 24 6 4.3677 -0.0383 4.0781 25 1 4.6231 1.0047 3.9623 26 6 4.8935 -0.7684 5.1351 27 7 4.5819 -2.0393 5.2765 28 14 6.0432 0.0529 6.3570 29 1 7.4454 -0.0866 5.8883 30 1 5.6997 1.4933 6.4689 31 1 5.8986 -0.5951 7.6853 32 1 -0.3633 0.4787 0.9093 33 1 -0.3634 0.5481 -0.8693 34 1 -0.3633 -1.0269 -0.0401 35 1 2.3400 -0.0792 -2.0207 36 1 1.3243 -1.4858 -1.5814 37 1 6.5486 -2.0700 -3.1692 38 1 5.1980 -3.2174 -3.3242 39 1 6.2410 -2.5000 -5.5370 40 1 4.4869 -2.2042 -5.4164 41 1 5.8684 2.6629 -4.2501 42 1 4.4994 0.9133 -2.4413 43 1 6.1172 0.2090 -2.1852 44 1 3.7673 -2.1325 1.2353 45 1 2.2647 -2.8395 0.5680 46 1 0.3134 -0.4678 2.4383 47 1 0.2809 -1.9538 1.4590 48 1 1.3036 -1.8686 2.9134 49 1 2.3866 0.9653 2.4570 50 1 3.7817 0.5119 1.4490 51 1 3.2955 -1.5770 3.2864 52 1 4.9496 -2.5496 6.0149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183143866.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:38 Heat of formation + Delta-G solvation = 44.265881 kcal Electronic energy + Delta-G solvation = -31613.427292 eV Core-core repulsion = 27614.218687 eV Total energy + Delta-G solvation = -3999.208605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.71453 -40.26584 -38.51824 -36.10425 -34.68788 -33.21453 -32.42408 -31.48966 -30.72480 -29.64649 -29.04116 -26.92603 -25.79394 -25.53337 -24.66859 -23.32771 -22.32189 -21.26023 -21.03325 -19.36647 -18.72506 -18.23665 -17.85220 -17.37845 -16.63299 -15.77926 -15.56241 -15.35358 -14.84284 -14.64818 -14.42431 -14.07031 -13.93030 -13.76293 -13.58414 -13.48114 -13.08622 -12.99378 -12.80181 -12.75956 -12.57332 -12.18705 -12.00778 -11.85383 -11.79791 -11.47882 -11.37453 -11.22180 -11.15287 -11.05174 -10.92833 -10.77064 -10.51218 -10.40926 -10.26596 -10.14683 -9.84750 -9.61568 -9.54525 -9.45363 -8.80423 -8.65119 -8.44786 -6.83885 -5.69411 -2.97130 1.66161 2.49876 2.60471 2.84263 3.12840 3.48976 3.53717 3.55099 4.21200 4.43042 4.56490 4.61806 4.63690 4.69496 4.85310 4.88671 4.97012 5.07489 5.19717 5.24586 5.33298 5.36826 5.43545 5.44050 5.49169 5.52222 5.54478 5.61491 5.70146 5.72861 5.77962 5.81881 5.89373 5.94702 5.99251 6.01908 6.06473 6.15727 6.18621 6.24214 6.28062 6.41206 6.44110 6.48383 6.62145 6.74096 6.84574 6.93837 7.03626 7.43773 7.76406 7.81542 8.42113 8.49581 9.60808 10.18409 10.52925 11.53628 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.002914 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.786620 B = 9605.834956 C =10684.734794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.081 0.919 4 C 0.105 3.895 5 N -0.619 5.619 6 C 0.535 3.465 7 O -0.529 6.529 8 C -0.096 4.096 9 H 0.089 0.911 10 C -0.099 4.099 11 C -0.038 4.038 12 C 0.085 3.915 13 N -0.292 5.292 14 N -0.487 5.487 15 H 0.438 0.562 16 C 0.063 3.937 17 C -0.230 4.230 18 C -0.028 4.028 19 C 0.111 3.889 20 C -0.076 4.076 21 C -0.134 4.134 22 C 0.170 3.830 23 N -0.728 5.728 24 C -0.236 4.236 25 H 0.068 0.932 26 C -0.013 4.013 27 N -0.933 5.933 28 Si 0.905 3.095 29 H -0.290 1.290 30 H -0.283 1.283 31 H -0.292 1.292 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.177 0.823 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.067 0.933 49 H 0.019 0.981 50 H 0.017 0.983 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.620 5.214 -23.543 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.018 4.018 5 N -0.353 5.353 6 C 0.324 3.676 7 O -0.404 6.404 8 C -0.118 4.118 9 H 0.107 0.893 10 C -0.137 4.137 11 C -0.077 4.077 12 C -0.084 4.084 13 N -0.114 5.114 14 N -0.195 5.195 15 H 0.282 0.718 16 C -0.083 4.083 17 C -0.242 4.242 18 C -0.067 4.067 19 C -0.011 4.011 20 C -0.077 4.077 21 C -0.191 4.191 22 C 0.042 3.958 23 N -0.373 5.373 24 C -0.368 4.368 25 H 0.086 0.914 26 C -0.209 4.209 27 N -0.581 5.581 28 Si 0.737 3.263 29 H -0.218 1.218 30 H -0.209 1.209 31 H -0.218 1.218 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.194 0.806 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.118 0.882 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.037 0.963 50 H 0.035 0.965 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.641 4.893 -24.416 25.532 hybrid contribution 0.501 0.875 1.276 1.627 sum -5.140 5.768 -23.139 24.395 Atomic orbital electron populations 1.21887 0.94265 1.01990 1.01723 1.22137 0.95931 0.99713 0.93964 0.90059 1.22485 0.87124 0.95374 0.96845 1.48961 1.12690 1.55751 1.17900 1.20151 0.80701 0.78933 0.87857 1.90764 1.38580 1.43606 1.67477 1.21279 1.01109 0.96695 0.92681 0.89282 1.21418 1.01001 0.98740 0.92538 1.20158 1.02973 0.87712 0.96824 1.22390 0.98341 0.97193 0.90475 1.76994 1.24082 0.87549 1.22772 1.46308 1.57626 1.07103 1.08460 0.71791 1.22067 1.00751 0.99938 0.85518 1.20017 1.14640 0.92058 0.97438 1.19871 1.00994 0.94261 0.91594 1.22536 1.00410 0.95583 0.82573 1.21697 0.95920 0.95554 0.94507 1.21864 0.96645 1.00890 0.99702 1.20634 0.93345 0.92779 0.89011 1.42375 1.55759 1.11002 1.28176 1.19183 1.19502 0.94625 1.03453 0.91408 1.24704 1.01029 0.95913 0.99253 1.69645 1.48503 1.07018 1.32979 0.86214 0.81033 0.78268 0.80826 1.21766 1.20876 1.21846 0.91755 0.93131 0.92166 0.90691 0.91227 0.90193 0.90454 0.89526 0.89680 0.80573 0.90640 0.90106 0.88176 0.91770 0.92279 0.93114 0.91408 0.96344 0.96549 0.78129 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.95 37.16 0.30 -1.01 16 2 C -0.10 -1.13 3.31 -89.22 -0.30 -1.42 16 3 H 0.08 0.96 7.71 -51.93 -0.40 0.56 16 4 C 0.11 1.11 6.13 -2.41 -0.01 1.09 16 5 N -0.62 -8.93 3.32 -169.31 -0.56 -9.50 16 6 C 0.54 8.30 6.86 -10.98 -0.08 8.23 16 7 O -0.53 -10.80 16.71 5.56 0.09 -10.71 16 8 C -0.10 -1.08 1.92 -91.56 -0.18 -1.26 16 9 H 0.09 0.84 6.97 -51.93 -0.36 0.47 16 10 C -0.10 -1.05 4.69 -26.52 -0.12 -1.18 16 11 C -0.04 -0.34 6.31 -27.57 -0.17 -0.52 16 12 C 0.08 0.93 7.10 -82.35 -0.58 0.34 16 13 N -0.29 -3.31 12.68 33.75 0.43 -2.88 16 14 N -0.49 -4.08 7.37 30.35 0.22 -3.85 16 15 H 0.44 2.18 8.96 -182.43 -1.64 0.55 16 16 C 0.06 0.52 11.95 -17.37 -0.21 0.31 16 17 C -0.23 -2.37 5.89 -104.98 -0.62 -2.99 16 18 C -0.03 -0.31 5.56 -27.60 -0.15 -0.46 16 19 C 0.11 1.85 5.89 -2.41 -0.01 1.84 16 20 C -0.08 -1.16 0.73 -153.11 -0.11 -1.27 16 21 C -0.13 -1.94 7.11 37.16 0.26 -1.68 16 22 C 0.17 3.42 4.96 -4.04 -0.02 3.40 16 23 N -0.73 -18.46 4.76 -59.91 -0.29 -18.74 16 24 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 25 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 26 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 27 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 28 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 31 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 32 H 0.06 0.63 6.85 -51.93 -0.36 0.27 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.53 6.72 -51.93 -0.35 0.18 16 35 H 0.07 0.65 7.15 -51.93 -0.37 0.28 16 36 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 37 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 44 H 0.10 2.16 6.69 -51.93 -0.35 1.81 16 45 H 0.06 0.97 7.85 -51.93 -0.41 0.57 16 46 H 0.06 0.82 6.90 -51.93 -0.36 0.46 16 47 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 48 H 0.07 1.19 6.96 -51.93 -0.36 0.83 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.38 10.17 5.98 -40.82 -0.24 9.92 16 52 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 401.25 15.07 6.05 6.05 Total: -1.00 -36.02 401.25 -10.33 -46.35 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -9.71 Total: 7.20 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.26 Total: -3.95 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 0.53 Total: -62.90 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.02 -10.33 -46.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183143866.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.613 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds