Wall clock time and date at job start Wed Apr 1 2020 04:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.38460 * 2 1 4 4 C 1.54388 * 110.34391 * 237.77894 * 2 1 3 5 5 N 1.48145 * 104.61572 * 217.26081 * 4 2 1 6 6 C 1.34777 * 127.83652 * 219.60481 * 5 4 2 7 7 O 1.21282 * 120.00343 * 174.90862 * 6 5 4 8 8 C 1.50706 * 119.99984 * 354.90330 * 6 5 4 9 9 H 1.09000 * 109.42717 * 334.83029 * 8 6 5 10 10 C 1.53028 * 109.42829 * 214.93123 * 8 6 5 11 11 C 1.53373 * 109.74449 * 168.19502 * 10 8 6 12 12 C 1.50951 * 108.20279 * 50.65412 * 11 10 8 13 13 N 1.30128 * 128.28492 * 163.34455 * 12 11 10 14 14 N 1.40312 * 108.12230 * 180.13358 * 13 12 11 15 15 H 0.97005 * 126.00124 * 179.97438 * 14 13 12 16 16 C 1.35194 * 107.99295 * 359.96095 * 14 13 12 17 17 C 1.34576 * 107.61897 * 359.96374 * 16 14 13 18 18 C 1.50882 * 128.32638 * 180.28760 * 17 16 14 19 19 C 1.48139 * 104.32616 * 39.58144 * 5 4 2 20 20 C 1.54283 * 110.34568 * 122.23681 * 2 1 3 21 21 C 1.52998 * 110.43018 * 359.95553 * 20 2 1 22 22 C 1.52999 * 110.34159 * 237.74265 * 20 2 1 23 23 N 1.46505 * 109.46964 * 183.00753 * 22 20 2 24 24 C 1.36932 * 119.99901 * 179.97438 * 23 22 20 25 25 H 1.08004 * 120.00023 * 0.02562 * 24 23 22 26 26 C 1.38813 * 119.99990 * 179.97438 * 24 23 22 27 27 N 1.31617 * 120.00116 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 119.99816 * 180.02562 * 26 24 23 29 29 H 1.48496 * 109.47259 * 269.99773 * 28 26 24 30 30 H 1.48497 * 109.47220 * 30.00566 * 28 26 24 31 31 H 1.48503 * 109.46741 * 150.00184 * 28 26 24 32 32 H 1.08997 * 109.47265 * 297.76106 * 1 2 3 33 33 H 1.09004 * 109.47486 * 57.76780 * 1 2 3 34 34 H 1.08998 * 109.47058 * 177.76585 * 1 2 3 35 35 H 1.08997 * 110.41342 * 98.47340 * 4 2 1 36 36 H 1.09007 * 110.50633 * 336.09055 * 4 2 1 37 37 H 1.08992 * 109.42649 * 288.28771 * 10 8 6 38 38 H 1.09007 * 109.42606 * 48.11621 * 10 8 6 39 39 H 1.09003 * 109.71198 * 170.32755 * 11 10 8 40 40 H 1.08991 * 109.72367 * 290.97350 * 11 10 8 41 41 H 1.08000 * 126.19286 * 179.97438 * 16 14 13 42 42 H 1.08997 * 109.71867 * 43.57370 * 18 17 16 43 43 H 1.09001 * 109.72018 * 282.92693 * 18 17 16 44 44 H 1.09003 * 110.41115 * 201.62754 * 19 5 4 45 45 H 1.09003 * 110.50655 * 79.24974 * 19 5 4 46 46 H 1.09000 * 109.47411 * 298.46603 * 21 20 2 47 47 H 1.09001 * 109.47303 * 58.46374 * 21 20 2 48 48 H 1.09003 * 109.46955 * 178.46364 * 21 20 2 49 49 H 1.08996 * 109.47143 * 63.00945 * 22 20 2 50 50 H 1.08996 * 109.47211 * 303.00982 * 22 20 2 51 51 H 0.96993 * 120.00119 * 0.02562 * 23 22 20 52 52 H 0.96996 * 120.00385 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0667 -0.7718 -1.2246 5 7 3.2664 -1.4815 -0.7229 6 6 4.4426 -1.6657 -1.3547 7 8 5.3674 -2.1924 -0.7731 8 6 4.6085 -1.2174 -2.7839 9 1 3.6343 -1.1946 -3.2722 10 6 5.5248 -2.1964 -3.5213 11 6 5.4668 -1.9245 -5.0296 12 6 5.7001 -0.4498 -5.2523 13 7 6.0240 0.1575 -6.3566 14 7 6.1362 1.5292 -6.0836 15 1 6.3672 2.2209 -6.7233 16 6 5.8657 1.7176 -4.7725 17 6 5.5921 0.5141 -4.2360 18 6 5.2241 0.1872 -2.8097 19 6 2.8802 -1.9421 0.6311 20 6 2.0664 -0.7716 1.2236 21 6 0.9078 -1.3037 2.0694 22 6 2.9692 0.1305 2.0673 23 7 3.5245 -0.6402 3.1827 24 6 4.3677 -0.0383 4.0781 25 1 4.6231 1.0047 3.9623 26 6 4.8935 -0.7684 5.1351 27 7 4.5819 -2.0393 5.2765 28 14 6.0432 0.0529 6.3570 29 1 7.4454 -0.0866 5.8883 30 1 5.6997 1.4933 6.4689 31 1 5.8986 -0.5951 7.6853 32 1 -0.3633 0.4787 0.9093 33 1 -0.3634 0.5481 -0.8693 34 1 -0.3633 -1.0269 -0.0401 35 1 2.3400 -0.0792 -2.0207 36 1 1.3243 -1.4858 -1.5814 37 1 6.5486 -2.0700 -3.1692 38 1 5.1980 -3.2174 -3.3242 39 1 6.2410 -2.5000 -5.5370 40 1 4.4869 -2.2042 -5.4164 41 1 5.8684 2.6629 -4.2501 42 1 4.4994 0.9133 -2.4413 43 1 6.1172 0.2090 -2.1852 44 1 3.7673 -2.1325 1.2353 45 1 2.2647 -2.8395 0.5680 46 1 0.3134 -0.4678 2.4383 47 1 0.2809 -1.9538 1.4590 48 1 1.3036 -1.8686 2.9134 49 1 2.3866 0.9653 2.4570 50 1 3.7817 0.5119 1.4490 51 1 3.2955 -1.5770 3.2864 52 1 4.9496 -2.5496 6.0149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183143866.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:37 Heat of formation + Delta-G solvation = 19.748306 kcal Electronic energy + Delta-G solvation = -31614.490454 eV Core-core repulsion = 27614.218687 eV Total energy + Delta-G solvation = -4000.271767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.45647 -41.42029 -39.71308 -37.06351 -36.45163 -34.62533 -33.20891 -33.11867 -31.51788 -31.15444 -29.93316 -28.09122 -27.29617 -26.62047 -25.55884 -25.09735 -23.34064 -22.30131 -21.95650 -20.32950 -19.75030 -19.60322 -19.00811 -18.54638 -17.97614 -16.87910 -16.68544 -16.60523 -16.22294 -15.95630 -15.48568 -15.31766 -15.13872 -14.97848 -14.72590 -14.55298 -14.44773 -14.26168 -13.90970 -13.71199 -13.60140 -13.18457 -13.07276 -12.93041 -12.88739 -12.84020 -12.79233 -12.57567 -12.55767 -12.26637 -12.08360 -12.04167 -11.95033 -11.90178 -11.52498 -11.30883 -11.22118 -11.12327 -10.94672 -10.69643 -10.32987 -9.66223 -9.37538 -8.97731 -7.95153 -5.22655 0.98142 1.43285 1.46663 1.54167 1.61984 1.76984 1.98523 2.04185 2.54923 3.34697 3.38240 3.52418 3.63943 3.73609 3.79303 3.84188 3.91803 4.14433 4.22212 4.27235 4.29132 4.37948 4.40732 4.45389 4.49819 4.61067 4.63325 4.67832 4.71213 4.77744 4.78826 4.87146 4.91039 4.93313 4.99535 5.02076 5.04868 5.11823 5.14252 5.18586 5.21587 5.25810 5.32731 5.38397 5.44101 5.49436 5.51096 5.67969 5.72302 6.27336 6.49177 6.67494 6.74077 7.22334 7.33583 8.11169 8.33860 9.28543 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.002914 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.786620 B = 9605.834956 C =10684.734794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 H 0.081 0.919 4 C 0.104 3.896 5 N -0.619 5.619 6 C 0.528 3.472 7 O -0.593 6.593 8 C -0.083 4.083 9 H 0.120 0.880 10 C -0.095 4.095 11 C -0.030 4.030 12 C 0.074 3.926 13 N -0.322 5.322 14 N -0.477 5.477 15 H 0.452 0.548 16 C 0.080 3.920 17 C -0.256 4.256 18 C -0.021 4.021 19 C 0.112 3.888 20 C -0.068 4.068 21 C -0.126 4.126 22 C 0.171 3.829 23 N -0.739 5.739 24 C -0.244 4.244 25 H 0.071 0.929 26 C -0.076 4.076 27 N -0.968 5.968 28 Si 0.971 3.029 29 H -0.293 1.293 30 H -0.267 1.267 31 H -0.292 1.292 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.211 0.789 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.040 0.960 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.028 0.972 49 H 0.024 0.976 50 H -0.001 1.001 51 H 0.375 0.625 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.873 7.343 -26.076 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.099 0.901 4 C -0.017 4.017 5 N -0.351 5.351 6 C 0.319 3.681 7 O -0.473 6.473 8 C -0.104 4.104 9 H 0.138 0.862 10 C -0.133 4.133 11 C -0.069 4.069 12 C -0.094 4.094 13 N -0.145 5.145 14 N -0.187 5.187 15 H 0.299 0.701 16 C -0.067 4.067 17 C -0.267 4.267 18 C -0.060 4.060 19 C -0.011 4.011 20 C -0.070 4.070 21 C -0.184 4.184 22 C 0.044 3.956 23 N -0.382 5.382 24 C -0.376 4.376 25 H 0.089 0.911 26 C -0.268 4.268 27 N -0.619 5.619 28 Si 0.800 3.200 29 H -0.220 1.220 30 H -0.191 1.191 31 H -0.218 1.218 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.228 0.772 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.102 0.898 48 H 0.047 0.953 49 H 0.041 0.959 50 H 0.017 0.983 51 H 0.208 0.792 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.943 7.084 -27.008 29.030 hybrid contribution 1.222 0.275 2.035 2.389 sum -6.722 7.359 -24.973 26.888 Atomic orbital electron populations 1.21864 0.91680 1.03039 1.02787 1.22129 0.97909 0.99035 0.91833 0.90069 1.22816 0.85807 0.96160 0.96944 1.49104 1.13712 1.55382 1.16943 1.21019 0.80019 0.77817 0.89280 1.90731 1.40827 1.46587 1.69196 1.21274 1.02764 0.96852 0.89524 0.86186 1.21353 0.99427 0.98699 0.93861 1.20138 1.04363 0.87267 0.95160 1.22627 0.98300 0.97888 0.90634 1.76937 1.25264 0.88968 1.23360 1.46362 1.56705 1.06654 1.08989 0.70086 1.22573 0.98240 1.00630 0.85255 1.20032 1.16835 0.92984 0.96866 1.19741 1.00097 0.94228 0.91890 1.22353 0.98260 0.97057 0.83452 1.21605 0.95087 0.94712 0.95556 1.21820 0.96529 1.01291 0.98739 1.20770 0.93464 0.93443 0.87919 1.42574 1.55573 1.10968 1.29096 1.19593 1.19359 0.94842 1.03783 0.91135 1.25545 1.03182 0.96620 1.01481 1.69810 1.50020 1.08442 1.33639 0.85167 0.78525 0.78069 0.78193 1.22004 1.19137 1.21841 0.92293 0.90413 0.91258 0.87785 0.88326 0.92816 0.90538 0.89029 0.87559 0.77197 0.89143 0.93085 0.94152 0.90204 0.91367 0.89758 0.95268 0.95853 0.98311 0.79215 0.94073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.95 71.98 0.57 -1.31 16 2 C -0.09 -1.78 3.31 -9.89 -0.03 -1.81 16 3 H 0.08 1.66 7.71 -2.38 -0.02 1.64 16 4 C 0.10 1.80 6.13 86.53 0.53 2.33 16 5 N -0.62 -17.47 3.32 -807.95 -2.68 -20.15 16 6 C 0.53 16.72 6.86 87.66 0.60 17.32 16 7 O -0.59 -26.06 16.71 -3.04 -0.05 -26.11 16 8 C -0.08 -1.78 1.92 -11.40 -0.02 -1.80 16 9 H 0.12 1.84 6.97 -2.39 -0.02 1.82 16 10 C -0.09 -2.03 4.69 30.73 0.14 -1.89 16 11 C -0.03 -0.51 6.31 30.05 0.19 -0.32 16 12 C 0.07 1.49 7.10 43.44 0.31 1.80 16 13 N -0.32 -6.74 12.68 -47.14 -0.60 -7.34 16 14 N -0.48 -6.81 7.37 -57.88 -0.43 -7.24 16 15 H 0.45 3.34 8.96 -213.18 -1.91 1.42 16 16 C 0.08 1.09 11.95 83.34 1.00 2.09 16 17 C -0.26 -4.80 5.89 -20.10 -0.12 -4.92 16 18 C -0.02 -0.43 5.56 30.03 0.17 -0.26 16 19 C 0.11 3.83 5.89 86.54 0.51 4.34 16 20 C -0.07 -2.07 0.73 -51.28 -0.04 -2.10 16 21 C -0.13 -3.56 7.11 71.98 0.51 -3.05 16 22 C 0.17 7.03 4.96 86.38 0.43 7.45 16 23 N -0.74 -39.21 4.76 -343.45 -1.63 -40.85 16 24 C -0.24 -14.34 9.99 84.03 0.84 -13.50 16 25 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 26 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 27 N -0.97 -61.89 13.06 21.65 0.28 -61.60 16 28 Si 0.97 48.39 29.55 68.60 2.03 50.42 16 29 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 30 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 31 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 32 H 0.06 0.91 6.85 -2.39 -0.02 0.90 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.86 6.72 -2.39 -0.02 0.85 16 35 H 0.10 1.27 7.15 -2.39 -0.02 1.25 16 36 H 0.10 1.24 7.84 -2.38 -0.02 1.22 16 37 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 38 H 0.08 1.62 8.09 -2.38 -0.02 1.61 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.05 1.34 8.12 -2.39 -0.02 1.32 16 44 H 0.04 1.87 6.69 -2.39 -0.02 1.86 16 45 H 0.08 2.43 7.85 -2.39 -0.02 2.41 16 46 H 0.07 1.79 6.90 -2.39 -0.02 1.77 16 47 H 0.08 1.80 6.70 -2.39 -0.02 1.78 16 48 H 0.03 1.04 6.96 -2.39 -0.02 1.02 16 49 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 51 H 0.37 21.11 5.98 -92.71 -0.55 20.56 16 52 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -84.77 401.25 1.45 -83.31 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: -1.52 Total: 29.33 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 6.05 Total: 0.23 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -5.06 Total: -137.18 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.11 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -84.77 1.45 -83.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183143866.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.063 kcal (2) G-P(sol) polarization free energy of solvation -84.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds