Wall clock time and date at job start Wed Apr 1 2020 04:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.30084 * 2 1 4 4 C 1.54384 * 110.34074 * 237.82335 * 2 1 3 5 5 N 1.48152 * 104.61689 * 217.25928 * 4 2 1 6 6 C 1.34771 * 127.83676 * 219.58578 * 5 4 2 7 7 O 1.21606 * 120.00084 * 184.89207 * 6 5 4 8 8 C 1.47432 * 120.00290 * 4.89199 * 6 5 4 9 9 C 1.41287 * 126.41264 * 341.52333 * 8 6 5 10 10 N 1.30448 * 108.02074 * 180.24783 * 9 8 6 11 11 N 1.39934 * 108.89688 * 359.64330 * 10 9 8 12 12 C 1.46502 * 125.75220 * 180.15289 * 11 10 9 13 13 C 1.34257 * 108.49233 * 0.36053 * 11 10 9 14 14 C 1.50705 * 126.29176 * 179.76732 * 13 11 10 15 15 C 1.52997 * 117.49762 * 311.13459 * 14 13 11 16 16 C 1.52991 * 60.00154 * 252.51146 * 15 14 13 17 17 C 1.48140 * 104.31880 * 39.84966 * 5 4 2 18 18 C 1.54286 * 110.34255 * 122.28330 * 2 1 3 19 19 C 1.52994 * 110.34395 * 359.89985 * 18 2 1 20 20 C 1.53000 * 110.34216 * 237.74157 * 18 2 1 21 21 N 1.46500 * 109.46801 * 180.02562 * 20 18 2 22 22 C 1.36943 * 119.99941 * 179.97438 * 21 20 18 23 23 H 1.07998 * 119.99712 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99642 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00567 * 0.02562 * 24 22 21 26 26 Si 1.86811 * 119.99672 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46963 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47209 * 119.99907 * 26 24 22 29 29 H 1.48504 * 109.47154 * 240.00246 * 26 24 22 30 30 H 1.09001 * 109.47018 * 180.72247 * 1 2 3 31 31 H 1.09003 * 109.47242 * 300.72379 * 1 2 3 32 32 H 1.08997 * 109.47624 * 60.72169 * 1 2 3 33 33 H 1.09007 * 110.41015 * 98.47666 * 4 2 1 34 34 H 1.08998 * 110.40940 * 336.04768 * 4 2 1 35 35 H 1.08004 * 125.98892 * 359.97438 * 9 8 6 36 36 H 1.09005 * 109.47201 * 263.05402 * 12 11 10 37 37 H 1.08996 * 109.47200 * 23.05657 * 12 11 10 38 38 H 1.09001 * 109.47107 * 143.05343 * 12 11 10 39 39 H 1.08995 * 115.54997 * 96.84523 * 14 13 11 40 40 H 1.08999 * 117.50203 * 0.02562 * 15 14 13 41 41 H 1.09000 * 117.49635 * 145.02096 * 15 14 13 42 42 H 1.09005 * 117.50248 * 252.51221 * 16 15 14 43 43 H 1.09008 * 117.51959 * 107.48294 * 16 15 14 44 44 H 1.08994 * 110.41388 * 78.94118 * 17 5 4 45 45 H 1.09009 * 110.40143 * 201.37091 * 17 5 4 46 46 H 1.08995 * 109.47806 * 59.99196 * 19 18 2 47 47 H 1.08997 * 109.47279 * 179.97438 * 19 18 2 48 48 H 1.09012 * 109.46941 * 299.99265 * 19 18 2 49 49 H 1.09004 * 109.46952 * 300.00190 * 20 18 2 50 50 H 1.08998 * 109.47274 * 60.00460 * 20 18 2 51 51 H 0.96998 * 119.99982 * 0.02562 * 21 20 18 52 52 H 0.97003 * 119.99937 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0666 -0.7709 -1.2252 5 7 3.2664 -1.4810 -0.7241 6 6 4.4424 -1.6650 -1.3562 7 8 5.3070 -2.3503 -0.8447 8 6 4.6807 -1.0356 -2.6679 9 6 3.6964 -0.5330 -3.5482 10 7 4.3015 -0.0617 -4.6034 11 7 5.6819 -0.2300 -4.4473 12 6 6.7079 0.1729 -5.4123 13 6 5.9072 -0.8272 -3.2661 14 6 7.2519 -1.2018 -2.6981 15 6 8.2166 -1.9629 -3.6096 16 6 7.5260 -2.6868 -2.4521 17 6 2.8779 -1.9483 0.6269 18 6 2.0663 -0.7727 1.2230 19 6 0.9062 -1.3033 2.0676 20 6 2.9692 0.1288 2.0675 21 7 3.4677 -0.6232 3.2218 22 6 4.3007 -0.0185 4.1250 23 1 4.5898 1.0128 3.9866 24 6 4.7726 -0.7308 5.2188 25 7 4.4199 -1.9876 5.3878 26 14 5.9084 0.0942 6.4513 27 1 6.1516 1.4993 6.0368 28 1 5.2771 0.0764 7.7953 29 1 7.1998 -0.6372 6.5012 30 1 -0.3633 -1.0276 0.0130 31 1 -0.3634 0.5250 0.8834 32 1 -0.3634 0.5025 -0.8963 33 1 2.3400 -0.0775 -2.0207 34 1 1.3234 -1.4845 -1.5807 35 1 2.6297 -0.5420 -3.3793 36 1 6.9897 -0.6852 -6.0226 37 1 6.3139 0.9612 -6.0536 38 1 7.5835 0.5425 -4.8786 39 1 7.6807 -0.4877 -1.9952 40 1 7.8789 -2.1924 -4.6202 41 1 9.2805 -1.7495 -3.5065 42 1 8.1355 -2.9496 -1.5874 43 1 6.7336 -3.3929 -2.7007 44 1 2.2595 -2.8431 0.5564 45 1 3.7641 -2.1444 1.2307 46 1 0.2941 -1.9735 1.4641 47 1 1.3006 -1.8464 2.9263 48 1 0.2972 -0.4681 2.4139 49 1 3.8112 0.4677 1.4639 50 1 2.3998 0.9913 2.4138 51 1 3.2083 -1.5496 3.3458 52 1 4.7494 -2.4852 6.1525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183605360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:14 Heat of formation + Delta-G solvation = 99.521286 kcal Electronic energy + Delta-G solvation = -31870.632947 eV Core-core repulsion = 27873.820396 eV Total energy + Delta-G solvation = -3996.812551 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.69539 -39.90301 -37.80899 -37.11020 -34.68842 -33.60114 -32.98225 -31.46021 -30.36575 -29.56575 -27.77531 -26.76616 -25.57444 -25.41496 -23.67058 -23.23082 -22.65593 -21.85335 -20.77647 -20.48576 -18.79242 -18.22086 -17.47697 -16.86393 -16.35057 -16.06331 -15.41334 -15.25503 -15.04172 -14.92219 -14.54428 -14.37863 -14.07839 -13.72016 -13.52424 -13.43200 -13.05704 -12.95176 -12.84255 -12.66067 -12.52942 -12.20041 -11.82328 -11.71625 -11.58777 -11.46839 -11.32824 -11.26831 -11.11963 -10.90420 -10.78074 -10.73129 -10.38012 -10.34052 -10.22214 -10.09553 -9.80761 -9.59289 -9.51178 -9.44378 -8.80164 -8.72433 -8.31758 -6.82357 -5.68736 -2.96186 1.43793 2.12173 2.13060 3.22019 3.48466 3.53906 3.56131 3.56836 3.61435 4.18500 4.27575 4.61682 4.67826 4.72117 4.73009 4.77972 4.83233 4.85991 4.98018 5.01756 5.07642 5.15493 5.32817 5.40608 5.40872 5.47618 5.48390 5.58887 5.61667 5.69853 5.74424 5.79991 5.82944 5.94845 5.98906 6.07304 6.10910 6.11366 6.18143 6.25110 6.30846 6.32641 6.52037 6.53643 6.64463 6.65809 6.78686 6.88905 6.98805 7.39783 7.78055 7.91165 8.50390 8.57124 9.61765 10.19846 10.54687 11.54363 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009948 B = 0.003500 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.982226 B = 7997.065708 C = 9922.499982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.081 0.919 4 C 0.092 3.908 5 N -0.615 5.615 6 C 0.611 3.389 7 O -0.531 6.531 8 C -0.277 4.277 9 C 0.068 3.932 10 N -0.300 5.300 11 N -0.360 5.360 12 C 0.098 3.902 13 C 0.183 3.817 14 C -0.107 4.107 15 C -0.187 4.187 16 C -0.114 4.114 17 C 0.118 3.882 18 C -0.075 4.075 19 C -0.134 4.134 20 C 0.170 3.830 21 N -0.729 5.729 22 C -0.235 4.235 23 H 0.068 0.932 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.199 0.801 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.050 0.950 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.017 0.983 50 H 0.019 0.981 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 2.334 -23.447 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.099 0.901 4 C -0.032 4.032 5 N -0.349 5.349 6 C 0.400 3.600 7 O -0.408 6.408 8 C -0.291 4.291 9 C -0.118 4.118 10 N -0.120 5.120 11 N -0.139 5.139 12 C -0.043 4.043 13 C 0.051 3.949 14 C -0.127 4.127 15 C -0.224 4.224 16 C -0.152 4.152 17 C -0.004 4.004 18 C -0.076 4.076 19 C -0.191 4.191 20 C 0.042 3.958 21 N -0.374 5.374 22 C -0.366 4.366 23 H 0.086 0.914 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.215 0.785 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.146 0.854 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.116 0.884 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.035 0.965 50 H 0.037 0.963 51 H 0.219 0.781 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.194 2.695 -24.420 24.598 hybrid contribution 0.531 -0.019 1.508 1.599 sum -0.662 2.676 -22.912 23.078 Atomic orbital electron populations 1.21896 0.94288 1.02125 1.01605 1.22138 0.95894 0.99739 0.94010 0.90102 1.22869 0.87217 0.95706 0.97359 1.48616 1.12437 1.55785 1.18016 1.16703 0.80330 0.79967 0.82977 1.90804 1.43272 1.39553 1.67149 1.19951 0.92016 1.17286 0.99870 1.24517 1.00504 0.95963 0.90811 1.77177 0.86248 1.25257 1.23299 1.48297 1.05759 1.45330 1.14559 1.21968 0.88760 1.01797 0.91745 1.20513 0.95180 0.93297 0.85892 1.20470 0.90308 0.98541 1.03333 1.23182 0.98114 1.04947 0.96145 1.22788 1.01598 0.92210 0.98622 1.22564 1.00232 0.95440 0.82158 1.21770 0.95925 0.95479 0.94469 1.21866 0.96644 1.00832 0.99769 1.20632 0.93725 0.92898 0.88537 1.42398 1.57179 1.12869 1.24904 1.19243 1.20182 0.95678 1.01517 0.91373 1.24694 1.01151 0.96079 0.98997 1.69659 1.49117 1.08403 1.30972 0.86154 0.80519 0.78368 0.81393 1.20681 1.21964 1.21934 0.92061 0.91847 0.93104 0.89820 0.91062 0.78512 0.90483 0.88856 0.89197 0.85380 0.89126 0.87960 0.87659 0.88310 0.91769 0.88361 0.93125 0.91335 0.92277 0.96516 0.96330 0.78087 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 7.93 37.16 0.29 -1.09 16 2 C -0.10 -1.21 3.30 -89.22 -0.29 -1.50 16 3 H 0.08 1.04 7.72 -51.93 -0.40 0.64 16 4 C 0.09 1.06 5.55 -2.41 -0.01 1.04 16 5 N -0.62 -9.56 3.31 -170.31 -0.56 -10.12 16 6 C 0.61 10.46 7.86 -12.52 -0.10 10.36 16 7 O -0.53 -10.73 14.48 5.27 0.08 -10.65 16 8 C -0.28 -4.01 6.01 -105.07 -0.63 -4.64 16 9 C 0.07 0.84 10.27 -16.98 -0.17 0.67 16 10 N -0.30 -3.79 12.50 30.86 0.39 -3.41 16 11 N -0.36 -4.09 3.98 -63.34 -0.25 -4.35 16 12 C 0.10 0.66 10.18 59.85 0.61 1.27 16 13 C 0.18 2.39 6.44 -81.60 -0.53 1.87 16 14 C -0.11 -1.26 5.20 -91.77 -0.48 -1.73 16 15 C -0.19 -1.62 9.43 -26.74 -0.25 -1.87 16 16 C -0.11 -1.37 8.36 -26.74 -0.22 -1.60 16 17 C 0.12 2.02 5.92 -2.19 -0.01 2.01 16 18 C -0.08 -1.20 0.73 -152.89 -0.11 -1.31 16 19 C -0.13 -2.01 7.11 37.15 0.26 -1.75 16 20 C 0.17 3.51 4.96 -4.04 -0.02 3.49 16 21 N -0.73 -18.63 4.80 -59.91 -0.29 -18.92 16 22 C -0.23 -6.73 9.99 -15.06 -0.15 -6.88 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 26 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 29 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 30 H 0.06 0.57 6.62 -51.93 -0.34 0.23 16 31 H 0.06 0.65 6.98 -51.93 -0.36 0.29 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.85 4.49 -51.93 -0.23 0.61 16 34 H 0.07 0.69 7.86 -51.93 -0.41 0.28 16 35 H 0.20 1.86 5.31 -52.48 -0.28 1.58 16 36 H 0.08 0.40 7.67 -51.93 -0.40 0.01 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.48 7.92 -51.93 -0.41 0.06 16 39 H 0.13 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.09 0.71 7.33 -51.93 -0.38 0.33 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.10 1.33 7.94 -51.92 -0.41 0.92 16 44 H 0.06 1.00 7.84 -51.93 -0.41 0.60 16 45 H 0.10 2.12 7.00 -51.92 -0.36 1.76 16 46 H 0.05 0.63 6.67 -51.93 -0.35 0.28 16 47 H 0.07 1.23 6.75 -51.93 -0.35 0.88 16 48 H 0.06 0.85 6.89 -51.92 -0.36 0.49 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.38 10.22 5.99 -40.82 -0.24 9.98 16 52 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -35.24 401.85 -9.00 -44.25 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.20 Total: 9.25 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -1.91 Total: -2.17 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: 0.01 Total: -64.72 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.24 -9.00 -44.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183605360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.769 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds