Wall clock time and date at job start Wed Apr 1 2020 04:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.30084 * 2 1 4 4 C 1.54384 * 110.34074 * 237.82335 * 2 1 3 5 5 N 1.48152 * 104.61689 * 217.25928 * 4 2 1 6 6 C 1.34771 * 127.83676 * 219.58578 * 5 4 2 7 7 O 1.21606 * 120.00084 * 184.89207 * 6 5 4 8 8 C 1.47432 * 120.00290 * 4.89199 * 6 5 4 9 9 C 1.41287 * 126.41264 * 341.52333 * 8 6 5 10 10 N 1.30448 * 108.02074 * 180.24783 * 9 8 6 11 11 N 1.39934 * 108.89688 * 359.64330 * 10 9 8 12 12 C 1.46502 * 125.75220 * 180.15289 * 11 10 9 13 13 C 1.34257 * 108.49233 * 0.36053 * 11 10 9 14 14 C 1.50705 * 126.29176 * 179.76732 * 13 11 10 15 15 C 1.52997 * 117.49762 * 311.13459 * 14 13 11 16 16 C 1.52991 * 60.00154 * 252.51146 * 15 14 13 17 17 C 1.48140 * 104.31880 * 39.84966 * 5 4 2 18 18 C 1.54286 * 110.34255 * 122.28330 * 2 1 3 19 19 C 1.52994 * 110.34395 * 359.89985 * 18 2 1 20 20 C 1.53000 * 110.34216 * 237.74157 * 18 2 1 21 21 N 1.46500 * 109.46801 * 180.02562 * 20 18 2 22 22 C 1.36943 * 119.99941 * 179.97438 * 21 20 18 23 23 H 1.07998 * 119.99712 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99642 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00567 * 0.02562 * 24 22 21 26 26 Si 1.86811 * 119.99672 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46963 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47209 * 119.99907 * 26 24 22 29 29 H 1.48504 * 109.47154 * 240.00246 * 26 24 22 30 30 H 1.09001 * 109.47018 * 180.72247 * 1 2 3 31 31 H 1.09003 * 109.47242 * 300.72379 * 1 2 3 32 32 H 1.08997 * 109.47624 * 60.72169 * 1 2 3 33 33 H 1.09007 * 110.41015 * 98.47666 * 4 2 1 34 34 H 1.08998 * 110.40940 * 336.04768 * 4 2 1 35 35 H 1.08004 * 125.98892 * 359.97438 * 9 8 6 36 36 H 1.09005 * 109.47201 * 263.05402 * 12 11 10 37 37 H 1.08996 * 109.47200 * 23.05657 * 12 11 10 38 38 H 1.09001 * 109.47107 * 143.05343 * 12 11 10 39 39 H 1.08995 * 115.54997 * 96.84523 * 14 13 11 40 40 H 1.08999 * 117.50203 * 0.02562 * 15 14 13 41 41 H 1.09000 * 117.49635 * 145.02096 * 15 14 13 42 42 H 1.09005 * 117.50248 * 252.51221 * 16 15 14 43 43 H 1.09008 * 117.51959 * 107.48294 * 16 15 14 44 44 H 1.08994 * 110.41388 * 78.94118 * 17 5 4 45 45 H 1.09009 * 110.40143 * 201.37091 * 17 5 4 46 46 H 1.08995 * 109.47806 * 59.99196 * 19 18 2 47 47 H 1.08997 * 109.47279 * 179.97438 * 19 18 2 48 48 H 1.09012 * 109.46941 * 299.99265 * 19 18 2 49 49 H 1.09004 * 109.46952 * 300.00190 * 20 18 2 50 50 H 1.08998 * 109.47274 * 60.00460 * 20 18 2 51 51 H 0.96998 * 119.99982 * 0.02562 * 21 20 18 52 52 H 0.97003 * 119.99937 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0666 -0.7709 -1.2252 5 7 3.2664 -1.4810 -0.7241 6 6 4.4424 -1.6650 -1.3562 7 8 5.3070 -2.3503 -0.8447 8 6 4.6807 -1.0356 -2.6679 9 6 3.6964 -0.5330 -3.5482 10 7 4.3015 -0.0617 -4.6034 11 7 5.6819 -0.2300 -4.4473 12 6 6.7079 0.1729 -5.4123 13 6 5.9072 -0.8272 -3.2661 14 6 7.2519 -1.2018 -2.6981 15 6 8.2166 -1.9629 -3.6096 16 6 7.5260 -2.6868 -2.4521 17 6 2.8779 -1.9483 0.6269 18 6 2.0663 -0.7727 1.2230 19 6 0.9062 -1.3033 2.0676 20 6 2.9692 0.1288 2.0675 21 7 3.4677 -0.6232 3.2218 22 6 4.3007 -0.0185 4.1250 23 1 4.5898 1.0128 3.9866 24 6 4.7726 -0.7308 5.2188 25 7 4.4199 -1.9876 5.3878 26 14 5.9084 0.0942 6.4513 27 1 6.1516 1.4993 6.0368 28 1 5.2771 0.0764 7.7953 29 1 7.1998 -0.6372 6.5012 30 1 -0.3633 -1.0276 0.0130 31 1 -0.3634 0.5250 0.8834 32 1 -0.3634 0.5025 -0.8963 33 1 2.3400 -0.0775 -2.0207 34 1 1.3234 -1.4845 -1.5807 35 1 2.6297 -0.5420 -3.3793 36 1 6.9897 -0.6852 -6.0226 37 1 6.3139 0.9612 -6.0536 38 1 7.5835 0.5425 -4.8786 39 1 7.6807 -0.4877 -1.9952 40 1 7.8789 -2.1924 -4.6202 41 1 9.2805 -1.7495 -3.5065 42 1 8.1355 -2.9496 -1.5874 43 1 6.7336 -3.3929 -2.7007 44 1 2.2595 -2.8431 0.5564 45 1 3.7641 -2.1444 1.2307 46 1 0.2941 -1.9735 1.4641 47 1 1.3006 -1.8464 2.9263 48 1 0.2972 -0.4681 2.4139 49 1 3.8112 0.4677 1.4639 50 1 2.3998 0.9913 2.4138 51 1 3.2083 -1.5496 3.3458 52 1 4.7494 -2.4852 6.1525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183605360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:13 Heat of formation + Delta-G solvation = 76.503604 kcal Electronic energy + Delta-G solvation = -31871.631069 eV Core-core repulsion = 27873.820396 eV Total energy + Delta-G solvation = -3997.810673 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.65019 -41.12551 -39.11855 -38.00935 -36.45921 -34.78560 -34.10791 -33.12451 -31.43101 -31.08964 -28.72118 -27.99620 -27.03944 -26.51519 -25.25564 -24.44400 -23.54447 -23.00940 -21.97286 -21.47196 -19.88839 -19.67271 -19.11302 -18.12324 -17.37447 -17.14916 -16.70803 -16.46793 -16.41578 -16.02187 -15.83513 -15.62306 -15.20559 -15.14021 -14.88008 -14.70748 -14.37957 -14.36118 -13.84538 -13.60731 -13.53402 -13.19954 -13.12168 -12.91257 -12.88203 -12.77753 -12.61202 -12.58101 -12.43658 -12.26672 -12.21752 -12.03166 -11.95431 -11.60830 -11.52402 -11.26078 -11.21148 -11.13516 -10.96194 -10.78642 -10.39670 -9.83190 -9.48340 -8.98477 -7.95572 -5.23327 0.43746 1.11593 1.32780 1.43261 1.45252 1.54781 2.03505 2.41638 2.54408 2.71152 3.32721 3.36640 3.39623 3.60092 3.62623 3.80543 3.86985 3.90627 4.01089 4.11111 4.16945 4.21081 4.29202 4.36906 4.39176 4.43617 4.48610 4.56216 4.61702 4.65279 4.71780 4.73909 4.81057 4.86304 4.91205 4.93803 4.95610 5.03986 5.06927 5.12254 5.17583 5.18785 5.27156 5.33697 5.40165 5.43820 5.48408 5.50270 5.72193 5.80543 6.26976 6.46315 6.70196 7.29572 7.33386 8.09996 8.34211 9.28173 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009948 B = 0.003500 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.982226 B = 7997.065708 C = 9922.499982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.075 0.925 4 C 0.092 3.908 5 N -0.618 5.618 6 C 0.601 3.399 7 O -0.579 6.579 8 C -0.306 4.306 9 C 0.075 3.925 10 N -0.311 5.311 11 N -0.353 5.353 12 C 0.085 3.915 13 C 0.180 3.820 14 C -0.122 4.122 15 C -0.141 4.141 16 C -0.138 4.138 17 C 0.121 3.879 18 C -0.068 4.068 19 C -0.126 4.126 20 C 0.172 3.828 21 N -0.738 5.738 22 C -0.245 4.245 23 H 0.069 0.931 24 C -0.073 4.073 25 N -0.967 5.967 26 Si 0.971 3.029 27 H -0.268 1.268 28 H -0.288 1.288 29 H -0.295 1.295 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.224 0.776 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.084 0.916 47 H 0.030 0.970 48 H 0.068 0.932 49 H -0.005 1.005 50 H 0.023 0.977 51 H 0.376 0.624 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 3.925 -26.290 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.094 0.906 4 C -0.029 4.029 5 N -0.350 5.350 6 C 0.392 3.608 7 O -0.459 6.459 8 C -0.321 4.321 9 C -0.111 4.111 10 N -0.131 5.131 11 N -0.132 5.132 12 C -0.054 4.054 13 C 0.046 3.954 14 C -0.142 4.142 15 C -0.178 4.178 16 C -0.176 4.176 17 C -0.002 4.002 18 C -0.069 4.069 19 C -0.183 4.183 20 C 0.045 3.955 21 N -0.381 5.381 22 C -0.377 4.377 23 H 0.087 0.913 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.800 3.200 27 H -0.193 1.193 28 H -0.215 1.215 29 H -0.222 1.222 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.240 0.760 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.049 0.951 48 H 0.087 0.913 49 H 0.013 0.987 50 H 0.041 0.959 51 H 0.210 0.790 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.213 4.346 -27.322 27.754 hybrid contribution 0.881 -0.487 2.332 2.540 sum -1.332 3.860 -24.990 25.321 Atomic orbital electron populations 1.21876 0.91453 1.03192 1.02865 1.22118 0.98063 0.98787 0.91971 0.90620 1.23166 0.86049 0.96414 0.97318 1.48709 1.13353 1.55683 1.17267 1.17231 0.80134 0.79570 0.83873 1.90769 1.44853 1.41725 1.68590 1.19898 0.93724 1.19112 0.99322 1.24831 1.01362 0.94996 0.89885 1.77140 0.86992 1.25521 1.23409 1.48639 1.06087 1.44044 1.14384 1.22412 0.88299 1.03209 0.91521 1.20669 0.95240 0.93019 0.86475 1.20480 0.91011 0.97893 1.04842 1.23280 0.98713 1.00351 0.95406 1.22650 1.02155 0.92325 1.00502 1.22382 0.98234 0.96817 0.82738 1.21671 0.95178 0.94652 0.95392 1.21817 0.96423 1.01366 0.98716 1.20733 0.93730 0.93645 0.87395 1.42571 1.56930 1.12810 1.25811 1.19618 1.20233 0.95813 1.02048 0.91337 1.25523 1.03142 0.96790 1.01110 1.69818 1.50558 1.09808 1.31576 0.85109 0.78106 0.77879 0.78895 1.19287 1.21481 1.22231 0.91014 0.92236 0.90337 0.87948 0.87890 0.75994 0.88425 0.87517 0.87576 0.86160 0.87434 0.85414 0.88884 0.90437 0.90146 0.93955 0.89715 0.95068 0.91323 0.98731 0.95925 0.79040 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 7.93 71.98 0.57 -1.56 16 2 C -0.09 -2.02 3.30 -9.89 -0.03 -2.05 16 3 H 0.08 1.81 7.72 -2.39 -0.02 1.79 16 4 C 0.09 1.89 5.55 86.53 0.48 2.37 16 5 N -0.62 -19.43 3.31 -811.01 -2.69 -22.12 16 6 C 0.60 21.49 7.86 86.67 0.68 22.17 16 7 O -0.58 -25.35 14.48 -4.05 -0.06 -25.41 16 8 C -0.31 -8.86 6.01 -20.15 -0.12 -8.98 16 9 C 0.08 1.71 10.27 85.65 0.88 2.59 16 10 N -0.31 -7.17 12.50 -56.27 -0.70 -7.88 16 11 N -0.35 -7.34 3.98 -354.30 -1.41 -8.75 16 12 C 0.08 0.89 10.18 127.77 1.30 2.19 16 13 C 0.18 4.63 6.44 42.14 0.27 4.90 16 14 C -0.12 -2.90 5.20 -11.54 -0.06 -2.96 16 15 C -0.14 -2.20 9.43 30.59 0.29 -1.91 16 16 C -0.14 -3.51 8.36 30.59 0.26 -3.25 16 17 C 0.12 4.33 5.92 86.68 0.51 4.84 16 18 C -0.07 -2.16 0.73 -51.13 -0.04 -2.20 16 19 C -0.13 -3.70 7.11 71.98 0.51 -3.19 16 20 C 0.17 7.36 4.96 86.38 0.43 7.79 16 21 N -0.74 -39.66 4.80 -343.45 -1.65 -41.30 16 22 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 23 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 24 C -0.07 -4.42 5.50 84.86 0.47 -3.96 16 25 N -0.97 -61.63 13.06 21.65 0.28 -61.34 16 26 Si 0.97 48.40 29.55 68.60 2.03 50.43 16 27 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 28 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 29 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 30 H 0.07 1.00 6.62 -2.39 -0.02 0.99 16 31 H 0.06 1.01 6.98 -2.39 -0.02 1.00 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 1.76 4.49 -2.38 -0.01 1.75 16 34 H 0.10 1.54 7.86 -2.39 -0.02 1.53 16 35 H 0.22 3.49 5.31 -2.91 -0.02 3.48 16 36 H 0.10 0.66 7.67 -2.38 -0.02 0.64 16 37 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.11 0.79 7.92 -2.39 -0.02 0.77 16 39 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.11 1.35 7.33 -2.39 -0.02 1.33 16 41 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 43 H 0.08 2.27 7.94 -2.38 -0.02 2.25 16 44 H 0.08 2.56 7.84 -2.39 -0.02 2.54 16 45 H 0.04 1.99 7.00 -2.38 -0.02 1.97 16 46 H 0.08 1.91 6.67 -2.39 -0.02 1.89 16 47 H 0.03 1.15 6.75 -2.39 -0.02 1.13 16 48 H 0.07 1.88 6.89 -2.38 -0.02 1.86 16 49 H -0.01 -0.25 8.14 -2.38 -0.02 -0.27 16 50 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.38 21.29 5.99 -92.71 -0.56 20.73 16 52 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -82.62 401.85 3.42 -79.20 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.38 Total: 34.09 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 7.24 Total: 3.08 kcal Atomic # 7 Polarization: -135.23 SS G_CDS: -6.16 Total: -141.39 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.06 Total: -25.41 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.03 Total: 50.43 kcal Total: -82.62 3.42 -79.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183605360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.705 kcal (2) G-P(sol) polarization free energy of solvation -82.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds