Wall clock time and date at job start Wed Apr 1 2020 04:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.52240 * 2 1 4 4 C 1.53623 * 109.43517 * 120.20543 * 2 1 3 5 5 N 1.46926 * 108.54443 * 174.72577 * 4 2 1 6 6 C 1.34774 * 120.62887 * 126.37082 * 5 4 2 7 7 O 1.21604 * 119.99879 * 3.42638 * 6 5 4 8 8 C 1.47422 * 119.99952 * 183.42898 * 6 5 4 9 9 C 1.41288 * 126.41856 * 316.88065 * 8 6 5 10 10 N 1.30443 * 108.02722 * 180.02562 * 9 8 6 11 11 N 1.39933 * 108.89787 * 0.02562 * 10 9 8 12 12 C 1.46500 * 125.75636 * 180.02562 * 11 10 9 13 13 C 1.53784 * 113.61299 * 265.02537 * 12 11 10 14 14 C 1.53779 * 87.08055 * 220.01749 * 13 12 11 15 15 C 1.53778 * 113.61729 * 167.52735 * 12 11 10 16 16 C 1.34255 * 108.48961 * 0.26094 * 11 10 9 17 17 C 1.46924 * 118.74018 * 306.09637 * 5 4 2 18 18 C 1.53195 * 108.77400 * 53.85744 * 17 5 4 19 19 C 1.53031 * 109.31538 * 305.36772 * 18 17 5 20 20 H 1.09003 * 109.46322 * 301.34073 * 19 18 17 21 21 C 1.53005 * 109.46249 * 181.38523 * 19 18 17 22 22 N 1.46504 * 109.46781 * 64.99631 * 21 19 18 23 23 C 1.36934 * 119.99546 * 179.97438 * 22 21 19 24 24 H 1.08004 * 120.00489 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.99983 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99924 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00362 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46715 * 60.00167 * 27 25 23 29 29 H 1.48501 * 109.47408 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.46969 * 300.00356 * 27 25 23 31 31 H 1.09006 * 109.46285 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46920 * 300.07744 * 1 2 3 33 33 H 1.08999 * 109.47102 * 60.08318 * 1 2 3 34 34 H 1.09006 * 109.73700 * 54.98895 * 4 2 1 35 35 H 1.08994 * 109.66345 * 294.42288 * 4 2 1 36 36 H 1.08005 * 125.98662 * 0.05777 * 9 8 6 37 37 H 1.09002 * 112.90787 * 36.26852 * 12 11 10 38 38 H 1.09002 * 113.61932 * 105.46841 * 13 12 11 39 39 H 1.09000 * 113.61084 * 334.56571 * 13 12 11 40 40 H 1.08997 * 113.61798 * 139.98015 * 14 13 12 41 41 H 1.09007 * 113.61486 * 270.88401 * 14 13 12 42 42 H 1.08998 * 113.61188 * 25.42732 * 15 12 11 43 43 H 1.09000 * 113.68606 * 254.53966 * 15 12 11 44 44 H 1.08000 * 126.29210 * 179.73341 * 16 11 10 45 45 H 1.08999 * 109.58858 * 173.64596 * 17 5 4 46 46 H 1.09000 * 109.58531 * 294.07575 * 17 5 4 47 47 H 1.09002 * 109.49635 * 65.31935 * 18 17 5 48 48 H 1.09000 * 109.49593 * 185.38138 * 18 17 5 49 49 H 1.08998 * 109.47269 * 184.99901 * 21 19 18 50 50 H 1.09000 * 109.46772 * 305.00072 * 21 19 18 51 51 H 0.96998 * 120.00228 * 0.02562 * 22 21 19 52 52 H 0.97004 * 120.00033 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0412 -0.7288 1.2520 5 7 3.5047 -0.8290 1.1695 6 6 4.2812 -0.3863 2.1782 7 8 3.7708 0.0443 3.1945 8 6 5.7493 -0.4239 2.0495 9 6 6.5182 -1.4864 1.5240 10 7 7.7750 -1.1414 1.5801 11 7 7.8690 0.1391 2.1366 12 6 9.1098 0.8826 2.3688 13 6 9.6654 0.7241 3.7940 14 6 10.0140 2.2209 3.7399 15 6 8.8853 2.3661 2.7057 16 6 6.6308 0.5693 2.4266 17 6 4.1054 -1.4265 -0.0308 18 6 3.5709 -0.6949 -1.2660 19 6 2.0409 -0.7230 -1.2483 20 1 1.6968 -1.7572 -1.2353 21 6 1.5037 -0.0231 -2.4984 22 7 1.8918 -0.7839 -3.6888 23 6 1.5200 -0.3467 -4.9320 24 1 0.9411 0.5592 -5.0351 25 6 1.8882 -1.0672 -6.0599 26 7 2.5942 -2.1709 -5.9344 27 14 1.3816 -0.4704 -7.7561 28 1 1.9468 0.8821 -7.9940 29 1 1.8948 -1.4099 -8.7852 30 1 -0.0998 -0.4091 -7.8372 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3633 0.5150 0.8893 33 1 -0.3633 0.5125 -0.8907 34 1 1.6086 -1.7283 1.2985 35 1 1.7630 -0.1662 2.1431 36 1 6.1329 -2.4203 1.1422 37 1 9.8543 0.7196 1.5894 38 1 10.5385 0.0743 3.8526 39 1 8.9040 0.4796 4.5347 40 1 9.8208 2.7483 4.6740 41 1 11.0057 2.4239 3.3354 42 1 7.9106 2.5705 3.1488 43 1 9.1281 3.0428 1.8864 44 1 6.3717 1.5192 2.8705 45 1 5.1897 -1.3244 0.0137 46 1 3.8377 -2.4816 -0.0868 47 1 3.9159 0.3390 -1.2541 48 1 3.9339 -1.1892 -2.1671 49 1 0.4167 0.0356 -2.4431 50 1 1.9194 0.9827 -2.5586 51 1 2.4115 -1.5977 -3.5962 52 1 2.8511 -2.6746 -6.7226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184412939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:17 Heat of formation + Delta-G solvation = 74.324590 kcal Electronic energy + Delta-G solvation = -30724.034647 eV Core-core repulsion = 26726.129485 eV Total energy + Delta-G solvation = -3997.905162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.81552 -39.99299 -38.84680 -37.74617 -34.92626 -33.60215 -32.12284 -31.81028 -30.55560 -30.22408 -27.09218 -26.83704 -26.33504 -25.54509 -23.92348 -22.79270 -22.26129 -21.47890 -21.17786 -20.00826 -19.64392 -19.21995 -17.84460 -17.08834 -16.50706 -16.16689 -15.94409 -15.37518 -14.96286 -14.91493 -14.67182 -14.42397 -14.04203 -13.84378 -13.56371 -13.47719 -13.36978 -13.12565 -12.85002 -12.77444 -12.68527 -12.50652 -12.33556 -11.93289 -11.84994 -11.71067 -11.52214 -11.32881 -11.22136 -11.00546 -10.96165 -10.83080 -10.77233 -10.35612 -10.24085 -10.12985 -9.95916 -9.80271 -9.64245 -9.59527 -8.83178 -8.82256 -8.44783 -6.87623 -5.74427 -3.02052 1.43224 2.06784 2.09654 2.94284 3.28722 3.45154 3.49552 3.50479 3.66923 3.87855 4.14232 4.19456 4.44707 4.48352 4.60770 4.76223 4.92773 4.95568 4.99868 5.02642 5.04164 5.11489 5.19624 5.22627 5.28459 5.32291 5.39209 5.41061 5.45250 5.58397 5.59872 5.63589 5.69941 5.75856 5.87115 5.94368 5.99309 6.05148 6.12526 6.21586 6.30063 6.35687 6.39538 6.54269 6.59063 6.61564 6.71226 6.88389 6.98661 7.36879 7.49639 7.71791 8.25646 8.45171 9.56081 10.15138 10.49762 11.48540 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.002408 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.277281 B =11623.746717 C =13065.062857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.072 0.928 4 C 0.120 3.880 5 N -0.601 5.601 6 C 0.596 3.404 7 O -0.554 6.554 8 C -0.283 4.283 9 C 0.078 3.922 10 N -0.294 5.294 11 N -0.350 5.350 12 C 0.132 3.868 13 C -0.147 4.147 14 C -0.137 4.137 15 C -0.148 4.148 16 C 0.115 3.885 17 C 0.097 3.903 18 C -0.124 4.124 19 C -0.089 4.089 20 H 0.072 0.928 21 C 0.156 3.844 22 N -0.731 5.731 23 C -0.237 4.237 24 H 0.068 0.932 25 C -0.015 4.015 26 N -0.935 5.935 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.287 1.287 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.192 0.808 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.181 0.819 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.087 0.913 49 H 0.024 0.976 50 H 0.015 0.985 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.238 6.129 21.715 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.003 4.003 5 N -0.333 5.333 6 C 0.385 3.615 7 O -0.433 6.433 8 C -0.298 4.298 9 C -0.109 4.109 10 N -0.113 5.113 11 N -0.129 5.129 12 C 0.031 3.969 13 C -0.186 4.186 14 C -0.175 4.175 15 C -0.187 4.187 16 C -0.035 4.035 17 C -0.026 4.026 18 C -0.162 4.162 19 C -0.108 4.108 20 H 0.090 0.910 21 C 0.029 3.971 22 N -0.376 5.376 23 C -0.368 4.368 24 H 0.086 0.914 25 C -0.211 4.211 26 N -0.584 5.584 27 Si 0.737 3.263 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.209 0.791 37 H 0.144 0.856 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.198 0.802 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.042 0.958 50 H 0.033 0.967 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.243 6.145 21.866 26.292 hybrid contribution -0.923 0.194 -1.034 1.399 sum 12.321 6.339 20.832 25.019 Atomic orbital electron populations 1.21834 0.94479 1.02175 1.01979 1.21533 0.95993 0.99855 0.94221 0.90970 1.21784 0.78592 1.00849 0.99046 1.47956 1.06800 1.60503 1.17993 1.17302 0.85019 0.76767 0.82441 1.90743 1.75203 1.48196 1.29147 1.20177 0.94196 0.98270 1.17195 1.24133 0.89761 0.99516 0.97462 1.77184 1.19947 0.94795 1.19390 1.48541 1.05574 1.12786 1.46012 1.23142 0.84025 0.90884 0.98854 1.23454 1.01930 0.97565 0.95641 1.22708 0.98780 0.96049 0.99918 1.23452 1.00809 0.94051 1.00349 1.22685 0.83951 0.99605 0.97253 1.22156 0.98945 0.97214 0.84244 1.21909 0.95922 1.01092 0.97281 1.21338 0.94809 1.00147 0.94468 0.90978 1.20757 0.96619 0.94026 0.85698 1.42370 1.65438 1.28929 1.00839 1.19181 1.27595 1.06151 0.83897 0.91383 1.24717 1.01007 0.97578 0.97756 1.69642 1.42816 1.17267 1.28625 0.86284 0.78045 0.77620 0.84344 1.21359 1.21722 1.21330 0.92503 0.93024 0.91382 0.91487 0.89254 0.79095 0.85591 0.90021 0.89170 0.89995 0.89161 0.88758 0.89500 0.80190 0.89123 0.91118 0.91943 0.89415 0.95842 0.96672 0.78305 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.82 37.16 0.33 -1.48 16 2 C -0.10 -1.28 2.43 -90.27 -0.22 -1.50 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.53 5.74 -3.49 -0.02 1.51 16 5 N -0.60 -7.92 2.97 -173.77 -0.52 -8.43 16 6 C 0.60 8.50 7.59 -12.52 -0.09 8.41 16 7 O -0.55 -9.43 16.52 5.27 0.09 -9.34 16 8 C -0.28 -3.52 5.33 -105.07 -0.56 -4.08 16 9 C 0.08 0.91 9.58 -16.98 -0.16 0.74 16 10 N -0.29 -3.58 12.50 30.86 0.39 -3.20 16 11 N -0.35 -3.56 3.77 -53.52 -0.20 -3.76 16 12 C 0.13 0.91 5.02 -67.12 -0.34 0.57 16 13 C -0.15 -0.82 7.88 -25.92 -0.20 -1.02 16 14 C -0.14 -0.52 8.08 -25.92 -0.21 -0.73 16 15 C -0.15 -0.72 7.42 -25.92 -0.19 -0.91 16 16 C 0.12 1.23 10.69 -16.56 -0.18 1.05 16 17 C 0.10 1.20 5.70 -3.71 -0.02 1.18 16 18 C -0.12 -1.86 5.25 -26.61 -0.14 -2.00 16 19 C -0.09 -1.39 1.73 -90.58 -0.16 -1.55 16 20 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 21 C 0.16 3.09 5.41 -4.04 -0.02 3.07 16 22 N -0.73 -18.21 5.32 -59.90 -0.32 -18.52 16 23 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 24 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 25 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 26 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 27 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.90 6.29 -51.93 -0.33 0.58 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.19 7.02 -51.93 -0.36 0.83 16 36 H 0.19 1.79 7.10 -52.48 -0.37 1.42 16 37 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.25 8.14 -51.92 -0.42 -0.17 16 42 H 0.09 0.45 6.29 -51.93 -0.33 0.13 16 43 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.18 1.51 6.65 -52.49 -0.35 1.16 16 45 H 0.09 1.05 4.15 -51.93 -0.22 0.84 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.09 1.51 7.15 -51.93 -0.37 1.14 16 49 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 50 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 51 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 52 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -34.02 404.94 -9.59 -43.61 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.39 Total: 7.47 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.44 Total: -4.02 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.07 Total: -61.25 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.02 -9.59 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184412939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.934 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds