Wall clock time and date at job start Wed Apr 1 2020 04:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.50227 * 2 1 4 4 C 1.53194 * 109.49696 * 239.89905 * 2 1 3 5 5 N 1.46922 * 108.77315 * 294.68398 * 4 2 1 6 6 C 1.34773 * 120.62817 * 126.39510 * 5 4 2 7 7 O 1.21604 * 120.00145 * 353.82705 * 6 5 4 8 8 C 1.47437 * 120.00193 * 173.83429 * 6 5 4 9 9 C 1.41289 * 126.41037 * 331.52080 * 8 6 5 10 10 N 1.30452 * 108.02284 * 179.85687 * 9 8 6 11 11 N 1.39940 * 108.89322 * 0.40304 * 10 9 8 12 12 C 1.46500 * 125.75200 * 179.73961 * 11 10 9 13 13 C 1.53780 * 113.61218 * 192.49900 * 12 11 10 14 14 C 1.53785 * 87.07861 * 220.01734 * 13 12 11 15 15 C 1.53777 * 87.08026 * 25.43419 * 14 13 12 16 16 C 1.34260 * 108.49173 * 359.73924 * 11 10 9 17 17 C 1.46940 * 118.76817 * 306.40753 * 5 4 2 18 18 C 1.53194 * 108.76643 * 53.55902 * 17 5 4 19 19 C 1.53038 * 109.34081 * 305.41311 * 18 17 5 20 20 H 1.08997 * 109.46020 * 301.33212 * 19 18 17 21 21 C 1.53000 * 109.46181 * 181.36691 * 19 18 17 22 22 N 1.46502 * 109.46892 * 65.00103 * 21 19 18 23 23 C 1.36935 * 120.00010 * 180.02562 * 22 21 19 24 24 H 1.07997 * 120.00444 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99996 * 180.02562 * 23 22 21 26 26 N 1.31617 * 119.99927 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00235 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47065 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47469 * 119.99484 * 27 25 23 30 30 H 1.48497 * 109.47225 * 239.99841 * 27 25 23 31 31 H 1.09003 * 109.47298 * 299.94209 * 1 2 3 32 32 H 1.09000 * 109.47082 * 59.93768 * 1 2 3 33 33 H 1.08997 * 109.47642 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.58766 * 54.47262 * 4 2 1 35 35 H 1.09000 * 109.58183 * 174.75629 * 4 2 1 36 36 H 1.08008 * 125.99156 * 359.97438 * 9 8 6 37 37 H 1.08999 * 112.84713 * 323.80772 * 12 11 10 38 38 H 1.08998 * 113.61344 * 334.56714 * 13 12 11 39 39 H 1.09001 * 113.61289 * 105.46921 * 13 12 11 40 40 H 1.08996 * 113.61701 * 270.88429 * 14 13 12 41 41 H 1.09001 * 113.68494 * 139.99289 * 14 13 12 42 42 H 1.09004 * 113.61369 * 220.01779 * 15 14 13 43 43 H 1.09004 * 113.69264 * 89.12869 * 15 14 13 44 44 H 1.07998 * 126.28919 * 179.97438 * 16 11 10 45 45 H 1.08996 * 109.56100 * 293.79150 * 17 5 4 46 46 H 1.09002 * 109.61622 * 173.35776 * 17 5 4 47 47 H 1.09001 * 109.49539 * 185.44336 * 18 17 5 48 48 H 1.09005 * 109.49633 * 65.38401 * 18 17 5 49 49 H 1.08994 * 109.47472 * 184.99899 * 21 19 18 50 50 H 1.09000 * 109.47295 * 305.00575 * 21 19 18 51 51 H 0.96998 * 119.99883 * 0.02562 * 22 21 19 52 52 H 0.97003 * 120.00035 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7243 -1.2494 5 7 1.6514 -2.1385 -1.1688 6 6 0.9743 -2.7226 -2.1771 7 8 0.5823 -2.0538 -3.1140 8 6 0.7087 -4.1725 -2.1442 9 6 1.5002 -5.1559 -1.5096 10 7 0.9344 -6.3155 -1.7023 11 7 -0.2240 -6.1332 -2.4661 12 6 -1.1378 -7.1923 -2.9013 13 6 -2.1446 -6.7362 -3.9705 14 6 -3.1941 -7.5822 -3.2304 15 6 -2.3415 -7.3905 -1.9650 16 6 -0.3566 -4.8240 -2.7327 17 6 2.0133 -2.9045 0.0318 18 6 1.5030 -2.1553 1.2668 19 6 2.0408 -0.7227 1.2486 20 1 3.1305 -0.7440 1.2355 21 6 1.5606 0.0179 2.4984 22 7 2.1479 -0.6016 3.6890 23 6 1.8592 -0.1053 4.9321 24 1 1.1982 0.7425 5.0350 25 6 2.4162 -0.6920 6.0602 26 7 3.2213 -1.7256 5.9349 27 14 2.0218 -0.0156 7.7561 28 1 1.0984 1.1401 7.6256 29 1 1.3775 -1.0745 8.5740 30 1 3.2762 0.4258 8.4170 31 1 -0.3634 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6007 -0.2739 -2.1388 35 1 3.1272 -0.6446 -1.2991 36 1 2.4126 -4.9786 -0.9596 37 1 -0.6224 -8.1194 -3.1520 38 1 -2.3510 -5.6662 -3.9477 39 1 -1.9149 -7.1028 -4.9710 40 1 -3.2418 -8.6160 -3.5723 41 1 -4.1748 -7.1101 -3.1718 42 1 -2.2709 -8.2852 -1.3464 43 1 -2.6010 -6.4997 -1.3928 44 1 -1.1506 -4.3650 -3.3030 45 1 3.0971 -3.0052 0.0875 46 1 1.5541 -3.8921 -0.0121 47 1 1.8480 -2.6621 2.1680 48 1 0.4132 -2.1351 1.2554 49 1 1.8685 1.0620 2.4428 50 1 0.4737 -0.0377 2.5586 51 1 2.7413 -1.3633 3.5966 52 1 3.6102 -2.1359 6.7233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184412941.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:22 Heat of formation + Delta-G solvation = 80.029888 kcal Electronic energy + Delta-G solvation = -30977.112102 eV Core-core repulsion = 26979.454340 eV Total energy + Delta-G solvation = -3997.657762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.84228 -40.11098 -38.87639 -37.76007 -34.90472 -33.48675 -32.13270 -31.58392 -30.47237 -30.25716 -27.12584 -26.88565 -26.33389 -25.66200 -23.87889 -23.04183 -22.62824 -21.52028 -21.16674 -20.06143 -19.57571 -18.51049 -17.83244 -17.02118 -16.40919 -16.27679 -15.75240 -15.59198 -15.18760 -14.86955 -14.73021 -14.23245 -13.98935 -13.79363 -13.75760 -13.39299 -13.35248 -13.30448 -12.92352 -12.83296 -12.70085 -12.43820 -12.18591 -12.10167 -11.91777 -11.51354 -11.33127 -11.31379 -11.21331 -11.01751 -10.97904 -10.88846 -10.72905 -10.28906 -10.16912 -10.10084 -9.92420 -9.77718 -9.62057 -9.59948 -8.86465 -8.82912 -8.41856 -6.87544 -5.74631 -3.02091 1.38674 2.03300 2.06814 3.04099 3.37006 3.44365 3.50288 3.52266 3.65529 3.87510 4.14769 4.18134 4.42809 4.48411 4.61083 4.76186 4.92729 4.94366 5.00236 5.03641 5.07457 5.12041 5.19312 5.24561 5.27119 5.33259 5.35472 5.40900 5.45091 5.57637 5.60140 5.69291 5.70406 5.81415 5.88075 5.93957 5.97462 6.13839 6.14404 6.21697 6.29759 6.37309 6.45160 6.54214 6.59943 6.62038 6.74114 6.87751 7.00247 7.35314 7.52564 7.73131 8.29015 8.45011 9.56142 10.15226 10.49806 11.48494 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.002423 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.690850 B =11551.572181 C =12778.494068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.080 0.920 4 C 0.119 3.881 5 N -0.599 5.599 6 C 0.597 3.403 7 O -0.556 6.556 8 C -0.287 4.287 9 C 0.077 3.923 10 N -0.295 5.295 11 N -0.351 5.351 12 C 0.132 3.868 13 C -0.147 4.147 14 C -0.137 4.137 15 C -0.148 4.148 16 C 0.121 3.879 17 C 0.093 3.907 18 C -0.126 4.126 19 C -0.088 4.088 20 H 0.071 0.929 21 C 0.158 3.842 22 N -0.732 5.732 23 C -0.235 4.235 24 H 0.069 0.931 25 C -0.016 4.016 26 N -0.934 5.934 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.196 0.804 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.183 0.817 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.017 0.983 50 H 0.021 0.979 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 -10.733 -22.385 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.331 5.331 6 C 0.386 3.614 7 O -0.435 6.435 8 C -0.302 4.302 9 C -0.111 4.111 10 N -0.114 5.114 11 N -0.130 5.130 12 C 0.030 3.970 13 C -0.186 4.186 14 C -0.175 4.175 15 C -0.186 4.186 16 C -0.030 4.030 17 C -0.029 4.029 18 C -0.164 4.164 19 C -0.107 4.107 20 H 0.089 0.911 21 C 0.031 3.969 22 N -0.376 5.376 23 C -0.367 4.367 24 H 0.087 0.913 25 C -0.211 4.211 26 N -0.583 5.583 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.212 0.788 37 H 0.143 0.857 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.199 0.801 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.035 0.965 50 H 0.039 0.961 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.592 -11.654 -22.555 27.140 hybrid contribution 0.103 0.946 1.038 1.408 sum -9.490 -10.708 -21.517 25.840 Atomic orbital electron populations 1.21842 0.94974 1.01948 1.01297 1.21463 0.96633 0.99386 0.94267 0.90144 1.21658 0.99259 0.80193 0.99219 1.47838 1.56046 1.11432 1.17797 1.17248 0.77019 0.85497 0.81665 1.90735 1.52687 1.64990 1.35132 1.20224 1.01642 0.94673 1.13635 1.24336 0.99953 0.89071 0.97698 1.77211 0.96953 1.23102 1.14161 1.48590 1.19399 1.05465 1.39503 1.23152 0.86902 0.90262 0.96646 1.23453 0.94798 1.01906 0.98436 1.22707 0.98202 1.00816 0.95740 1.23454 0.94106 1.03747 0.97299 1.22751 0.99022 0.84017 0.97222 1.22288 1.00322 0.95930 0.84372 1.21958 1.01339 0.95965 0.97156 1.21303 1.00215 0.94737 0.94462 0.91058 1.20716 0.95874 0.94628 0.85710 1.42391 1.56730 1.37632 1.00865 1.19276 1.22747 1.10763 0.83879 0.91269 1.24718 1.00186 0.98457 0.97768 1.69660 1.35781 1.24505 1.28371 0.86139 0.77397 0.77983 0.84834 1.20625 1.21934 1.21927 0.92127 0.93358 0.92618 0.89180 0.91572 0.78756 0.85674 0.88711 0.89617 0.89196 0.89948 0.89930 0.89073 0.80051 0.91162 0.88914 0.89522 0.91481 0.96542 0.96134 0.78306 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.38 37.15 0.31 -1.64 16 2 C -0.10 -1.30 2.72 -90.50 -0.25 -1.54 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.50 5.84 -3.71 -0.02 1.48 16 5 N -0.60 -7.72 2.41 -174.02 -0.42 -8.14 16 6 C 0.60 8.38 7.63 -12.52 -0.10 8.28 16 7 O -0.56 -9.28 16.43 5.27 0.09 -9.20 16 8 C -0.29 -3.52 5.56 -105.06 -0.58 -4.11 16 9 C 0.08 0.88 9.59 -16.98 -0.16 0.72 16 10 N -0.30 -3.57 12.50 30.86 0.39 -3.18 16 11 N -0.35 -3.50 3.77 -53.53 -0.20 -3.71 16 12 C 0.13 0.88 5.02 -67.12 -0.34 0.54 16 13 C -0.15 -0.67 7.42 -25.92 -0.19 -0.86 16 14 C -0.14 -0.52 8.08 -25.92 -0.21 -0.73 16 15 C -0.15 -0.86 7.88 -25.92 -0.20 -1.06 16 16 C 0.12 1.27 10.60 -16.56 -0.18 1.09 16 17 C 0.09 1.14 5.20 -3.70 -0.02 1.12 16 18 C -0.13 -1.87 4.90 -26.61 -0.13 -2.00 16 19 C -0.09 -1.37 1.96 -90.58 -0.18 -1.55 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 21 C 0.16 3.13 5.18 -4.04 -0.02 3.11 16 22 N -0.73 -18.21 5.32 -59.91 -0.32 -18.53 16 23 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 24 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 25 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 26 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 27 Si 0.90 22.49 29.55 -169.99 -5.02 17.46 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 31 H 0.06 0.85 6.58 -51.93 -0.34 0.51 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.80 5.97 -51.93 -0.31 0.49 16 34 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.20 1.85 6.38 -52.48 -0.33 1.51 16 37 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.44 6.29 -51.93 -0.33 0.11 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.18 1.51 6.65 -52.49 -0.35 1.17 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.06 4.12 -51.93 -0.21 0.84 16 47 H 0.09 1.47 7.15 -51.93 -0.37 1.10 16 48 H 0.07 1.04 6.34 -51.93 -0.33 0.71 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 51 H 0.38 9.90 6.85 -40.82 -0.28 9.62 16 52 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 399.73 15.07 6.02 6.02 Total: -1.00 -33.97 399.73 -9.44 -43.42 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -8.19 Total: 7.60 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.51 Total: -4.43 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.17 Total: -60.88 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.97 -9.44 -43.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184412941.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.449 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds