Wall clock time and date at job start Wed Apr 1 2020 04:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.50227 * 2 1 4 4 C 1.53194 * 109.49696 * 239.89905 * 2 1 3 5 5 N 1.46922 * 108.77315 * 294.68398 * 4 2 1 6 6 C 1.34773 * 120.62817 * 126.39510 * 5 4 2 7 7 O 1.21604 * 120.00145 * 353.82705 * 6 5 4 8 8 C 1.47437 * 120.00193 * 173.83429 * 6 5 4 9 9 C 1.41289 * 126.41037 * 331.52080 * 8 6 5 10 10 N 1.30452 * 108.02284 * 179.85687 * 9 8 6 11 11 N 1.39940 * 108.89322 * 0.40304 * 10 9 8 12 12 C 1.46500 * 125.75200 * 179.73961 * 11 10 9 13 13 C 1.53780 * 113.61218 * 192.49900 * 12 11 10 14 14 C 1.53785 * 87.07861 * 220.01734 * 13 12 11 15 15 C 1.53777 * 87.08026 * 25.43419 * 14 13 12 16 16 C 1.34260 * 108.49173 * 359.73924 * 11 10 9 17 17 C 1.46940 * 118.76817 * 306.40753 * 5 4 2 18 18 C 1.53194 * 108.76643 * 53.55902 * 17 5 4 19 19 C 1.53038 * 109.34081 * 305.41311 * 18 17 5 20 20 H 1.08997 * 109.46020 * 301.33212 * 19 18 17 21 21 C 1.53000 * 109.46181 * 181.36691 * 19 18 17 22 22 N 1.46502 * 109.46892 * 65.00103 * 21 19 18 23 23 C 1.36935 * 120.00010 * 180.02562 * 22 21 19 24 24 H 1.07997 * 120.00444 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99996 * 180.02562 * 23 22 21 26 26 N 1.31617 * 119.99927 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00235 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47065 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47469 * 119.99484 * 27 25 23 30 30 H 1.48497 * 109.47225 * 239.99841 * 27 25 23 31 31 H 1.09003 * 109.47298 * 299.94209 * 1 2 3 32 32 H 1.09000 * 109.47082 * 59.93768 * 1 2 3 33 33 H 1.08997 * 109.47642 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.58766 * 54.47262 * 4 2 1 35 35 H 1.09000 * 109.58183 * 174.75629 * 4 2 1 36 36 H 1.08008 * 125.99156 * 359.97438 * 9 8 6 37 37 H 1.08999 * 112.84713 * 323.80772 * 12 11 10 38 38 H 1.08998 * 113.61344 * 334.56714 * 13 12 11 39 39 H 1.09001 * 113.61289 * 105.46921 * 13 12 11 40 40 H 1.08996 * 113.61701 * 270.88429 * 14 13 12 41 41 H 1.09001 * 113.68494 * 139.99289 * 14 13 12 42 42 H 1.09004 * 113.61369 * 220.01779 * 15 14 13 43 43 H 1.09004 * 113.69264 * 89.12869 * 15 14 13 44 44 H 1.07998 * 126.28919 * 179.97438 * 16 11 10 45 45 H 1.08996 * 109.56100 * 293.79150 * 17 5 4 46 46 H 1.09002 * 109.61622 * 173.35776 * 17 5 4 47 47 H 1.09001 * 109.49539 * 185.44336 * 18 17 5 48 48 H 1.09005 * 109.49633 * 65.38401 * 18 17 5 49 49 H 1.08994 * 109.47472 * 184.99899 * 21 19 18 50 50 H 1.09000 * 109.47295 * 305.00575 * 21 19 18 51 51 H 0.96998 * 119.99883 * 0.02562 * 22 21 19 52 52 H 0.97003 * 120.00035 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7243 -1.2494 5 7 1.6514 -2.1385 -1.1688 6 6 0.9743 -2.7226 -2.1771 7 8 0.5823 -2.0538 -3.1140 8 6 0.7087 -4.1725 -2.1442 9 6 1.5002 -5.1559 -1.5096 10 7 0.9344 -6.3155 -1.7023 11 7 -0.2240 -6.1332 -2.4661 12 6 -1.1378 -7.1923 -2.9013 13 6 -2.1446 -6.7362 -3.9705 14 6 -3.1941 -7.5822 -3.2304 15 6 -2.3415 -7.3905 -1.9650 16 6 -0.3566 -4.8240 -2.7327 17 6 2.0133 -2.9045 0.0318 18 6 1.5030 -2.1553 1.2668 19 6 2.0408 -0.7227 1.2486 20 1 3.1305 -0.7440 1.2355 21 6 1.5606 0.0179 2.4984 22 7 2.1479 -0.6016 3.6890 23 6 1.8592 -0.1053 4.9321 24 1 1.1982 0.7425 5.0350 25 6 2.4162 -0.6920 6.0602 26 7 3.2213 -1.7256 5.9349 27 14 2.0218 -0.0156 7.7561 28 1 1.0984 1.1401 7.6256 29 1 1.3775 -1.0745 8.5740 30 1 3.2762 0.4258 8.4170 31 1 -0.3634 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6007 -0.2739 -2.1388 35 1 3.1272 -0.6446 -1.2991 36 1 2.4126 -4.9786 -0.9596 37 1 -0.6224 -8.1194 -3.1520 38 1 -2.3510 -5.6662 -3.9477 39 1 -1.9149 -7.1028 -4.9710 40 1 -3.2418 -8.6160 -3.5723 41 1 -4.1748 -7.1101 -3.1718 42 1 -2.2709 -8.2852 -1.3464 43 1 -2.6010 -6.4997 -1.3928 44 1 -1.1506 -4.3650 -3.3030 45 1 3.0971 -3.0052 0.0875 46 1 1.5541 -3.8921 -0.0121 47 1 1.8480 -2.6621 2.1680 48 1 0.4132 -2.1351 1.2554 49 1 1.8685 1.0620 2.4428 50 1 0.4737 -0.0377 2.5586 51 1 2.7413 -1.3633 3.5966 52 1 3.6102 -2.1359 6.7233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184412941.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:21 Heat of formation + Delta-G solvation = 60.081419 kcal Electronic energy + Delta-G solvation = -30977.977132 eV Core-core repulsion = 26979.454340 eV Total energy + Delta-G solvation = -3998.522792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.66090 -41.14710 -39.47948 -38.91916 -36.52448 -34.89938 -33.40336 -32.61844 -31.92066 -31.35977 -28.47974 -28.04675 -26.77908 -26.37418 -25.55791 -24.33325 -23.64719 -22.54010 -22.28153 -20.97870 -20.20773 -19.71854 -19.07458 -18.55855 -17.41573 -16.87940 -16.74867 -16.72303 -16.51770 -16.00735 -15.64731 -15.52295 -15.41561 -15.23393 -14.87628 -14.68919 -14.32359 -14.16131 -14.01773 -13.76659 -13.57386 -13.49162 -13.41306 -13.16485 -12.95642 -12.82139 -12.64752 -12.39084 -12.38629 -12.13852 -12.09203 -11.98097 -11.89255 -11.65333 -11.51851 -11.48352 -11.30315 -11.18347 -10.90023 -10.79394 -10.51366 -9.77993 -9.44775 -8.94410 -7.93127 -5.20299 0.54254 1.13058 1.35352 1.47936 1.48052 1.58108 2.02641 2.36582 2.57351 3.14975 3.40467 3.45222 3.58633 3.70962 3.76022 3.77572 3.78320 3.82137 3.86884 4.00664 4.11809 4.27929 4.33038 4.36200 4.45290 4.49028 4.51988 4.58445 4.66191 4.70271 4.72643 4.77708 4.83153 4.89058 4.91150 4.92468 4.93758 5.02187 5.03252 5.11756 5.20959 5.23637 5.26718 5.28421 5.36534 5.42777 5.52233 5.58577 5.69388 5.88049 6.30177 6.45260 6.53657 7.22736 7.36741 8.14050 8.37987 9.30476 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.002423 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.690850 B =11551.572181 C =12778.494068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.093 0.907 4 C 0.121 3.879 5 N -0.597 5.597 6 C 0.598 3.402 7 O -0.587 6.587 8 C -0.311 4.311 9 C 0.076 3.924 10 N -0.321 5.321 11 N -0.345 5.345 12 C 0.116 3.884 13 C -0.141 4.141 14 C -0.124 4.124 15 C -0.150 4.150 16 C 0.127 3.873 17 C 0.103 3.897 18 C -0.119 4.119 19 C -0.078 4.078 20 H 0.071 0.929 21 C 0.159 3.841 22 N -0.742 5.742 23 C -0.242 4.242 24 H 0.071 0.929 25 C -0.074 4.074 26 N -0.967 5.967 27 Si 0.969 3.031 28 H -0.269 1.269 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.209 0.791 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.202 0.798 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.016 0.984 50 H 0.017 0.983 51 H 0.376 0.624 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.103 -10.935 -23.583 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.111 0.889 4 C -0.001 4.001 5 N -0.328 5.328 6 C 0.388 3.612 7 O -0.469 6.469 8 C -0.326 4.326 9 C -0.110 4.110 10 N -0.140 5.140 11 N -0.123 5.123 12 C 0.016 3.984 13 C -0.179 4.179 14 C -0.162 4.162 15 C -0.189 4.189 16 C -0.025 4.025 17 C -0.020 4.020 18 C -0.157 4.157 19 C -0.096 4.096 20 H 0.089 0.911 21 C 0.032 3.968 22 N -0.385 5.385 23 C -0.374 4.374 24 H 0.089 0.911 25 C -0.267 4.267 26 N -0.618 5.618 27 Si 0.799 3.201 28 H -0.193 1.193 29 H -0.221 1.221 30 H -0.220 1.220 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.225 0.775 37 H 0.151 0.849 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.218 0.782 45 H 0.105 0.895 46 H 0.120 0.880 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.034 0.966 50 H 0.035 0.965 51 H 0.208 0.792 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.402 -11.852 -23.766 28.522 hybrid contribution 0.276 0.991 1.368 1.712 sum -10.126 -10.862 -22.398 26.873 Atomic orbital electron populations 1.21780 0.95168 1.01260 1.01326 1.21408 0.96332 0.99860 0.93322 0.88922 1.21674 1.00193 0.79880 0.98371 1.47854 1.55681 1.11610 1.17649 1.17452 0.76419 0.86053 0.81281 1.90711 1.54042 1.65824 1.36275 1.20219 1.02993 0.93980 1.15433 1.24544 1.00295 0.88707 0.97500 1.77161 0.98100 1.23595 1.15187 1.48895 1.18953 1.05998 1.38442 1.23624 0.86802 0.90041 0.97983 1.23471 0.93871 1.02091 0.98513 1.22698 0.97933 1.01660 0.93869 1.23449 0.94341 1.03101 0.97989 1.23070 0.98857 0.84207 0.96401 1.22244 1.01270 0.95717 0.82740 1.21828 1.00672 0.95691 0.97546 1.21184 1.00075 0.94868 0.93515 0.91108 1.20844 0.95343 0.94736 0.85843 1.42570 1.56759 1.37569 1.01569 1.19635 1.22027 1.10445 0.85274 0.91096 1.25496 1.00711 0.99146 1.01323 1.69802 1.37103 1.25867 1.29007 0.85132 0.77120 0.77531 0.80348 1.19328 1.22074 1.22020 0.92949 0.92401 0.93660 0.89465 0.89930 0.77451 0.84946 0.88745 0.88286 0.87667 0.89283 0.89941 0.90495 0.78175 0.89481 0.87999 0.91900 0.92421 0.96622 0.96489 0.79159 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 8.38 71.98 0.60 -3.03 16 2 C -0.09 -2.26 2.72 -10.72 -0.03 -2.29 16 3 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 4 C 0.12 2.85 5.84 86.36 0.50 3.36 16 5 N -0.60 -14.70 2.41 -822.75 -1.98 -16.69 16 6 C 0.60 16.29 7.63 86.67 0.66 16.95 16 7 O -0.59 -19.18 16.43 -4.04 -0.07 -19.25 16 8 C -0.31 -7.41 5.56 -20.15 -0.11 -7.53 16 9 C 0.08 1.69 9.59 85.65 0.82 2.51 16 10 N -0.32 -7.55 12.50 -56.27 -0.70 -8.26 16 11 N -0.34 -6.57 3.77 -323.26 -1.22 -7.79 16 12 C 0.12 1.39 5.02 45.52 0.23 1.61 16 13 C -0.14 -0.98 7.42 31.12 0.23 -0.75 16 14 C -0.12 -0.66 8.08 31.12 0.25 -0.41 16 15 C -0.15 -1.58 7.88 31.12 0.25 -1.33 16 16 C 0.13 2.54 10.60 84.27 0.89 3.43 16 17 C 0.10 2.40 5.20 86.36 0.45 2.85 16 18 C -0.12 -3.53 4.90 30.67 0.15 -3.38 16 19 C -0.08 -2.36 1.96 -10.77 -0.02 -2.39 16 20 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 21 C 0.16 6.26 5.18 86.38 0.45 6.71 16 22 N -0.74 -37.25 5.32 -343.45 -1.83 -39.08 16 23 C -0.24 -13.55 9.99 84.04 0.84 -12.71 16 24 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 25 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 26 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 27 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 30 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 31 H 0.05 1.45 6.58 -2.39 -0.02 1.43 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.28 5.97 -2.39 -0.01 1.26 16 34 H 0.09 2.18 7.00 -2.39 -0.02 2.16 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.21 3.75 6.38 -2.91 -0.02 3.73 16 37 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 0.68 6.29 -2.39 -0.02 0.67 16 39 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.20 3.08 6.65 -2.91 -0.02 3.06 16 45 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.10 2.25 4.12 -2.39 -0.01 2.24 16 47 H 0.06 2.18 7.15 -2.39 -0.02 2.17 16 48 H 0.06 1.81 6.34 -2.38 -0.02 1.79 16 49 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.02 0.70 6.74 -2.39 -0.02 0.68 16 51 H 0.38 19.78 6.85 -92.71 -0.63 19.14 16 52 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -72.57 399.73 3.44 -69.13 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.30 Total: 32.22 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 6.63 Total: -0.21 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -5.45 Total: -130.27 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.07 Total: -19.25 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -72.57 3.44 -69.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184412941.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.210 kcal (2) G-P(sol) polarization free energy of solvation -72.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds