Wall clock time and date at job start Wed Apr 1 2020 04:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.52532 * 2 1 4 4 C 1.53625 * 109.63456 * 239.91560 * 2 1 3 5 5 N 1.46935 * 108.53946 * 294.86171 * 4 2 1 6 6 C 1.34778 * 120.62524 * 126.37076 * 5 4 2 7 7 O 1.21574 * 120.00285 * 5.72752 * 6 5 4 8 8 C 1.47708 * 119.99864 * 185.72783 * 6 5 4 9 9 C 1.41507 * 126.51876 * 186.80012 * 8 6 5 10 10 C 1.35367 * 105.50207 * 179.79919 * 9 8 6 11 11 C 1.50694 * 126.38508 * 180.24496 * 10 9 8 12 12 C 1.53002 * 117.49928 * 33.74647 * 11 10 9 13 13 C 1.53000 * 117.49777 * 325.12349 * 11 10 9 14 14 N 1.35034 * 107.22798 * 0.35347 * 10 9 8 15 15 C 1.46502 * 124.88181 * 179.89993 * 14 10 9 16 16 N 1.28468 * 110.23392 * 359.62363 * 14 10 9 17 17 C 1.46921 * 118.74141 * 306.09882 * 5 4 2 18 18 C 1.53188 * 108.77958 * 53.85591 * 17 5 4 19 19 C 1.53039 * 109.31308 * 305.37026 * 18 17 5 20 20 H 1.08997 * 109.45757 * 301.33854 * 19 18 17 21 21 C 1.53008 * 109.45931 * 181.38156 * 19 18 17 22 22 N 1.46500 * 109.46591 * 64.99742 * 21 19 18 23 23 C 1.36946 * 119.99491 * 179.97438 * 22 21 19 24 24 H 1.08002 * 119.99750 * 0.02562 * 23 22 21 25 25 C 1.38810 * 119.99603 * 179.97438 * 23 22 21 26 26 N 1.31622 * 119.99692 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00525 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.46825 * 89.99470 * 27 25 23 29 29 H 1.48492 * 109.46976 * 209.99862 * 27 25 23 30 30 H 1.48495 * 109.46758 * 329.99688 * 27 25 23 31 31 H 1.09000 * 109.47145 * 299.92033 * 1 2 3 32 32 H 1.08998 * 109.46569 * 59.91907 * 1 2 3 33 33 H 1.08997 * 109.46742 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.73610 * 175.13343 * 4 2 1 35 35 H 1.08992 * 109.66285 * 54.55479 * 4 2 1 36 36 H 1.07998 * 127.24569 * 359.97438 * 9 8 6 37 37 H 1.08993 * 115.55166 * 179.45492 * 11 10 9 38 38 H 1.08998 * 117.49728 * 359.97438 * 12 11 10 39 39 H 1.08999 * 117.50123 * 145.02173 * 12 11 10 40 40 H 1.09009 * 117.49880 * 214.97727 * 13 11 10 41 41 H 1.08994 * 117.50313 * 0.02562 * 13 11 10 42 42 H 1.08997 * 109.47082 * 269.71068 * 15 14 10 43 43 H 1.09000 * 109.47142 * 149.71884 * 15 14 10 44 44 H 1.08998 * 109.47548 * 29.71878 * 15 14 10 45 45 H 1.08997 * 109.58447 * 173.64932 * 17 5 4 46 46 H 1.09004 * 109.58550 * 293.93099 * 17 5 4 47 47 H 1.09004 * 109.49152 * 65.31654 * 18 17 5 48 48 H 1.08999 * 109.50135 * 185.37880 * 18 17 5 49 49 H 1.08997 * 109.46677 * 184.99696 * 21 19 18 50 50 H 1.08994 * 109.46781 * 304.99812 * 21 19 18 51 51 H 0.96995 * 120.00867 * 0.02562 * 22 21 19 52 52 H 0.96997 * 119.99798 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0463 -0.7253 -1.2520 5 7 1.6516 -2.1382 -1.1694 6 6 0.9749 -2.7222 -2.1782 7 8 0.7760 -2.1116 -3.2105 8 6 0.4747 -4.1040 -2.0295 9 6 -0.1288 -4.8941 -3.0365 10 6 -0.4166 -6.0769 -2.4444 11 6 -1.0674 -7.2687 -3.0978 12 6 -0.7547 -7.5235 -4.5737 13 6 -2.1313 -6.9968 -4.1632 14 7 -0.0141 -5.9888 -1.1584 15 6 -0.1449 -7.0572 -0.1646 16 7 0.5052 -4.8355 -0.9334 17 6 2.0140 -2.9040 0.0309 18 6 1.5031 -2.1557 1.2661 19 6 2.0408 -0.7231 1.2484 20 1 3.1305 -0.7444 1.2354 21 6 1.5607 0.0171 2.4985 22 7 2.1480 -0.6028 3.6888 23 6 1.8601 -0.1063 4.9321 24 1 1.1997 0.7421 5.0351 25 6 2.4162 -0.6941 6.0600 26 7 2.1390 -0.2171 7.2550 27 14 3.5578 -2.1618 5.8819 28 1 4.9578 -1.6861 5.7440 29 1 3.4446 -3.0257 7.0843 30 1 3.1785 -2.9403 4.6756 31 1 -0.3633 0.5126 0.8907 32 1 -0.3632 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1328 -0.6516 -1.2984 35 1 1.6089 -0.2752 -2.1431 36 1 -0.3171 -4.6135 -4.0622 37 1 -1.2088 -8.1379 -2.4557 38 1 -0.0786 -6.8288 -5.0721 39 1 -0.6902 -8.5606 -4.9028 40 1 -2.9726 -7.6876 -4.2222 41 1 -2.3603 -5.9560 -4.3918 42 1 -1.1005 -6.9592 0.3505 43 1 0.6670 -6.9819 0.5588 44 1 -0.0985 -8.0252 -0.6634 45 1 1.5554 -3.8918 -0.0136 46 1 3.0978 -3.0064 0.0856 47 1 0.4133 -2.1354 1.2541 48 1 1.8476 -2.6631 2.1672 49 1 1.8686 1.0612 2.4431 50 1 0.4738 -0.0385 2.5585 51 1 2.7414 -1.3645 3.5963 52 1 2.5279 -0.6276 8.0432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184513066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:06 Heat of formation + Delta-G solvation = 95.563664 kcal Electronic energy + Delta-G solvation = -31299.146806 eV Core-core repulsion = 27302.162639 eV Total energy + Delta-G solvation = -3996.984166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.03648 -40.16377 -37.99274 -37.68672 -35.04470 -33.96329 -33.18343 -31.75790 -30.70335 -30.58502 -28.17576 -27.21261 -26.49758 -24.11364 -23.78862 -22.86529 -22.84622 -22.55807 -21.12505 -20.53761 -19.66433 -18.43392 -17.65570 -17.40713 -16.79653 -16.54149 -15.78423 -15.52879 -15.29524 -14.98333 -14.60249 -14.31562 -14.16994 -14.13176 -13.86187 -13.65426 -13.44159 -13.07282 -13.00821 -12.89367 -12.64574 -12.41893 -12.27464 -12.24561 -12.04638 -11.55526 -11.50577 -11.46980 -11.35512 -11.10619 -10.98711 -10.77330 -10.73796 -10.36580 -10.21135 -10.08636 -10.04736 -9.63372 -9.54614 -9.33419 -9.05149 -8.85036 -8.50611 -7.17722 -5.74057 -3.08479 1.34944 1.76118 2.10672 3.01800 3.31481 3.37201 3.40278 3.45322 3.46909 3.86556 4.07362 4.33912 4.43082 4.47557 4.55957 4.60943 4.71513 4.86346 4.93963 4.99557 5.02276 5.05529 5.15854 5.16347 5.25877 5.34554 5.39256 5.44937 5.55273 5.60597 5.63019 5.63701 5.71354 5.73369 5.80108 5.85756 5.89345 5.94669 6.07823 6.19772 6.22464 6.30078 6.39316 6.41913 6.50186 6.59562 6.72272 6.81804 6.92508 7.38964 7.70104 8.03583 8.17268 8.45427 9.25192 9.97688 10.18337 11.44714 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.002780 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.849941 B =10071.094446 C =11557.322132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.083 0.917 4 C 0.117 3.883 5 N -0.591 5.591 6 C 0.603 3.397 7 O -0.541 6.541 8 C -0.005 4.005 9 C -0.178 4.178 10 C 0.048 3.952 11 C -0.099 4.099 12 C -0.162 4.162 13 C -0.161 4.161 14 N -0.281 5.281 15 C 0.082 3.918 16 N -0.255 5.255 17 C 0.074 3.926 18 C -0.122 4.122 19 C -0.094 4.094 20 H 0.069 0.931 21 C 0.163 3.837 22 N -0.755 5.755 23 C -0.239 4.239 24 H 0.089 0.911 25 C 0.001 3.999 26 N -0.936 5.936 27 Si 0.884 3.116 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.277 1.277 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.159 0.841 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.134 0.866 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.026 0.974 50 H 0.029 0.971 51 H 0.360 0.640 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 -17.028 -24.382 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.101 0.899 4 C -0.005 4.005 5 N -0.323 5.323 6 C 0.389 3.611 7 O -0.417 6.417 8 C -0.164 4.164 9 C -0.206 4.206 10 C -0.076 4.076 11 C -0.119 4.119 12 C -0.199 4.199 13 C -0.199 4.199 14 N -0.067 5.067 15 C -0.058 4.058 16 N -0.089 5.089 17 C -0.050 4.050 18 C -0.160 4.160 19 C -0.113 4.113 20 H 0.088 0.912 21 C 0.036 3.964 22 N -0.401 5.401 23 C -0.369 4.369 24 H 0.107 0.893 25 C -0.194 4.194 26 N -0.585 5.585 27 Si 0.715 3.285 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.177 0.823 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.150 0.850 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.043 0.957 50 H 0.047 0.953 51 H 0.193 0.807 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.693 -16.624 -23.515 29.355 hybrid contribution 0.689 -1.107 -0.384 1.359 sum -5.003 -17.731 -23.899 30.176 Atomic orbital electron populations 1.21865 0.94823 1.02038 1.01568 1.21526 0.96709 0.99391 0.93966 0.89859 1.21819 0.99448 0.80004 0.99232 1.47897 1.54611 1.11580 1.18174 1.16964 0.77620 0.83349 0.83136 1.90759 1.59041 1.63887 1.28027 1.21872 1.06976 0.96195 0.91391 1.21341 1.06063 0.92223 1.00993 1.20423 1.04521 0.97197 0.85440 1.20290 1.04057 0.95608 0.91961 1.23102 0.99309 1.02890 0.94633 1.23106 0.92608 1.03299 1.00848 1.45489 1.41706 1.10966 1.08586 1.22218 1.05120 0.87237 0.91258 1.73278 1.17219 0.93522 1.24900 1.22747 1.00293 0.98321 0.83589 1.21905 1.01574 0.95515 0.97056 1.21390 1.00134 0.95073 0.94736 0.91221 1.20698 0.96243 0.94812 0.84665 1.42741 1.57451 1.37281 1.02632 1.19080 1.23943 1.11948 0.81976 0.89315 1.24673 1.00408 0.99179 0.95130 1.69706 1.48449 1.43295 0.97018 0.86542 0.81550 0.83669 0.76750 1.21157 1.21836 1.20322 0.91836 0.93237 0.92592 0.91432 0.89059 0.82326 0.86598 0.87949 0.87967 0.87944 0.87903 0.89417 0.88164 0.88754 0.84968 0.92162 0.91210 0.90446 0.95658 0.95322 0.80740 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.39 37.16 0.31 -1.69 16 2 C -0.10 -1.29 2.72 -90.27 -0.25 -1.54 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.52 5.85 -3.48 -0.02 1.50 16 5 N -0.59 -8.24 2.40 -173.67 -0.42 -8.65 16 6 C 0.60 9.12 7.69 -12.39 -0.10 9.02 16 7 O -0.54 -9.32 16.37 5.30 0.09 -9.24 16 8 C -0.01 -0.07 6.87 -82.76 -0.57 -0.64 16 9 C -0.18 -2.04 9.86 -39.36 -0.39 -2.43 16 10 C 0.05 0.45 6.60 -82.21 -0.54 -0.09 16 11 C -0.10 -0.59 5.94 -91.77 -0.55 -1.14 16 12 C -0.16 -0.81 10.05 -26.73 -0.27 -1.08 16 13 C -0.16 -0.83 10.05 -26.73 -0.27 -1.10 16 14 N -0.28 -2.73 3.70 -63.85 -0.24 -2.96 16 15 C 0.08 0.45 11.06 59.85 0.66 1.11 16 16 N -0.25 -3.17 8.38 33.42 0.28 -2.89 16 17 C 0.07 1.00 6.32 -3.72 -0.02 0.98 16 18 C -0.12 -1.87 4.90 -26.61 -0.13 -2.00 16 19 C -0.09 -1.47 1.96 -90.57 -0.18 -1.65 16 20 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 21 C 0.16 3.18 5.19 -4.04 -0.02 3.16 16 22 N -0.76 -18.07 5.12 -59.91 -0.31 -18.37 16 23 C -0.24 -6.87 10.47 -15.06 -0.16 -7.02 16 24 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 25 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 26 N -0.94 -29.71 13.97 55.49 0.78 -28.94 16 27 Si 0.88 22.17 27.74 -169.99 -4.71 17.46 16 28 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 30 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 31 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.83 5.97 -51.93 -0.31 0.52 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.22 7.04 -51.93 -0.37 0.86 16 36 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.12 0.47 7.16 -51.93 -0.37 0.10 16 38 H 0.10 0.58 7.94 -51.93 -0.41 0.17 16 39 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.10 0.62 7.97 -51.93 -0.41 0.20 16 42 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.26 7.10 -51.93 -0.37 -0.11 16 45 H 0.13 1.78 3.76 -108.24 -0.41 1.38 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 1.11 6.33 -51.93 -0.33 0.78 16 48 H 0.08 1.30 7.15 -51.93 -0.37 0.93 16 49 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.03 0.58 6.74 -51.93 -0.35 0.23 16 51 H 0.36 8.35 4.71 -40.82 -0.19 8.16 16 52 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 402.15 15.07 6.06 6.06 Total: -1.00 -35.40 402.15 -9.52 -44.92 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.48 Total: 7.27 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.58 Total: -4.66 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: 0.10 Total: -61.82 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.40 -9.52 -44.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184513066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.485 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds