Wall clock time and date at job start Wed Apr 1 2020 04:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.52532 * 2 1 4 4 C 1.53625 * 109.63456 * 239.91560 * 2 1 3 5 5 N 1.46935 * 108.53946 * 294.86171 * 4 2 1 6 6 C 1.34778 * 120.62524 * 126.37076 * 5 4 2 7 7 O 1.21574 * 120.00285 * 5.72752 * 6 5 4 8 8 C 1.47708 * 119.99864 * 185.72783 * 6 5 4 9 9 C 1.41507 * 126.51876 * 186.80012 * 8 6 5 10 10 C 1.35367 * 105.50207 * 179.79919 * 9 8 6 11 11 C 1.50694 * 126.38508 * 180.24496 * 10 9 8 12 12 C 1.53002 * 117.49928 * 33.74647 * 11 10 9 13 13 C 1.53000 * 117.49777 * 325.12349 * 11 10 9 14 14 N 1.35034 * 107.22798 * 0.35347 * 10 9 8 15 15 C 1.46502 * 124.88181 * 179.89993 * 14 10 9 16 16 N 1.28468 * 110.23392 * 359.62363 * 14 10 9 17 17 C 1.46921 * 118.74141 * 306.09882 * 5 4 2 18 18 C 1.53188 * 108.77958 * 53.85591 * 17 5 4 19 19 C 1.53039 * 109.31308 * 305.37026 * 18 17 5 20 20 H 1.08997 * 109.45757 * 301.33854 * 19 18 17 21 21 C 1.53008 * 109.45931 * 181.38156 * 19 18 17 22 22 N 1.46500 * 109.46591 * 64.99742 * 21 19 18 23 23 C 1.36946 * 119.99491 * 179.97438 * 22 21 19 24 24 H 1.08002 * 119.99750 * 0.02562 * 23 22 21 25 25 C 1.38810 * 119.99603 * 179.97438 * 23 22 21 26 26 N 1.31622 * 119.99692 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00525 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.46825 * 89.99470 * 27 25 23 29 29 H 1.48492 * 109.46976 * 209.99862 * 27 25 23 30 30 H 1.48495 * 109.46758 * 329.99688 * 27 25 23 31 31 H 1.09000 * 109.47145 * 299.92033 * 1 2 3 32 32 H 1.08998 * 109.46569 * 59.91907 * 1 2 3 33 33 H 1.08997 * 109.46742 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.73610 * 175.13343 * 4 2 1 35 35 H 1.08992 * 109.66285 * 54.55479 * 4 2 1 36 36 H 1.07998 * 127.24569 * 359.97438 * 9 8 6 37 37 H 1.08993 * 115.55166 * 179.45492 * 11 10 9 38 38 H 1.08998 * 117.49728 * 359.97438 * 12 11 10 39 39 H 1.08999 * 117.50123 * 145.02173 * 12 11 10 40 40 H 1.09009 * 117.49880 * 214.97727 * 13 11 10 41 41 H 1.08994 * 117.50313 * 0.02562 * 13 11 10 42 42 H 1.08997 * 109.47082 * 269.71068 * 15 14 10 43 43 H 1.09000 * 109.47142 * 149.71884 * 15 14 10 44 44 H 1.08998 * 109.47548 * 29.71878 * 15 14 10 45 45 H 1.08997 * 109.58447 * 173.64932 * 17 5 4 46 46 H 1.09004 * 109.58550 * 293.93099 * 17 5 4 47 47 H 1.09004 * 109.49152 * 65.31654 * 18 17 5 48 48 H 1.08999 * 109.50135 * 185.37880 * 18 17 5 49 49 H 1.08997 * 109.46677 * 184.99696 * 21 19 18 50 50 H 1.08994 * 109.46781 * 304.99812 * 21 19 18 51 51 H 0.96995 * 120.00867 * 0.02562 * 22 21 19 52 52 H 0.96997 * 119.99798 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0463 -0.7253 -1.2520 5 7 1.6516 -2.1382 -1.1694 6 6 0.9749 -2.7222 -2.1782 7 8 0.7760 -2.1116 -3.2105 8 6 0.4747 -4.1040 -2.0295 9 6 -0.1288 -4.8941 -3.0365 10 6 -0.4166 -6.0769 -2.4444 11 6 -1.0674 -7.2687 -3.0978 12 6 -0.7547 -7.5235 -4.5737 13 6 -2.1313 -6.9968 -4.1632 14 7 -0.0141 -5.9888 -1.1584 15 6 -0.1449 -7.0572 -0.1646 16 7 0.5052 -4.8355 -0.9334 17 6 2.0140 -2.9040 0.0309 18 6 1.5031 -2.1557 1.2661 19 6 2.0408 -0.7231 1.2484 20 1 3.1305 -0.7444 1.2354 21 6 1.5607 0.0171 2.4985 22 7 2.1480 -0.6028 3.6888 23 6 1.8601 -0.1063 4.9321 24 1 1.1997 0.7421 5.0351 25 6 2.4162 -0.6941 6.0600 26 7 2.1390 -0.2171 7.2550 27 14 3.5578 -2.1618 5.8819 28 1 4.9578 -1.6861 5.7440 29 1 3.4446 -3.0257 7.0843 30 1 3.1785 -2.9403 4.6756 31 1 -0.3633 0.5126 0.8907 32 1 -0.3632 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1328 -0.6516 -1.2984 35 1 1.6089 -0.2752 -2.1431 36 1 -0.3171 -4.6135 -4.0622 37 1 -1.2088 -8.1379 -2.4557 38 1 -0.0786 -6.8288 -5.0721 39 1 -0.6902 -8.5606 -4.9028 40 1 -2.9726 -7.6876 -4.2222 41 1 -2.3603 -5.9560 -4.3918 42 1 -1.1005 -6.9592 0.3505 43 1 0.6670 -6.9819 0.5588 44 1 -0.0985 -8.0252 -0.6634 45 1 1.5554 -3.8918 -0.0136 46 1 3.0978 -3.0064 0.0856 47 1 0.4133 -2.1354 1.2541 48 1 1.8476 -2.6631 2.1672 49 1 1.8686 1.0612 2.4431 50 1 0.4738 -0.0385 2.5585 51 1 2.7414 -1.3645 3.5963 52 1 2.5279 -0.6276 8.0432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184513066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:05 Heat of formation + Delta-G solvation = 74.114644 kcal Electronic energy + Delta-G solvation = -31300.076905 eV Core-core repulsion = 27302.162639 eV Total energy + Delta-G solvation = -3997.914266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.83101 -41.30194 -39.23870 -38.14353 -36.70200 -35.05132 -34.34894 -33.36686 -32.24087 -31.45576 -29.06246 -28.69456 -27.47454 -25.42675 -24.69409 -24.21144 -23.62172 -23.22533 -22.59975 -21.39808 -20.59681 -19.99599 -19.07007 -18.38824 -17.78023 -17.32393 -16.88799 -16.69210 -16.33818 -16.11817 -15.83242 -15.66314 -15.29342 -15.15532 -14.89891 -14.80042 -14.68308 -14.61779 -14.11205 -13.77042 -13.73520 -13.52657 -13.43544 -13.26912 -12.91176 -12.83319 -12.71273 -12.57358 -12.39986 -12.18541 -12.10406 -12.01594 -11.87897 -11.84926 -11.54919 -11.43388 -11.35248 -11.30650 -10.97896 -10.68947 -10.16861 -9.77712 -9.61036 -9.27259 -8.02065 -5.35273 0.43029 0.97363 1.37154 1.41861 1.44602 1.49125 2.00107 2.27881 2.49152 3.03553 3.15938 3.29067 3.45135 3.54441 3.62093 3.80430 3.81657 3.96734 4.03703 4.08949 4.10947 4.12801 4.26454 4.34671 4.38063 4.43293 4.44896 4.51427 4.62619 4.65018 4.69842 4.72597 4.75860 4.81795 4.82558 4.92237 4.97511 5.01931 5.03722 5.15060 5.16926 5.18223 5.21081 5.25036 5.27658 5.37350 5.51556 5.61135 5.76257 5.90221 6.21913 6.29801 6.81373 7.08812 7.10014 7.85003 8.05658 9.19760 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.002780 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.849941 B =10071.094446 C =11557.322132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.098 0.902 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.599 3.401 7 O -0.572 6.572 8 C -0.034 4.034 9 C -0.199 4.199 10 C 0.061 3.939 11 C -0.107 4.107 12 C -0.156 4.156 13 C -0.160 4.160 14 N -0.276 5.276 15 C 0.069 3.931 16 N -0.270 5.270 17 C 0.080 3.920 18 C -0.115 4.115 19 C -0.084 4.084 20 H 0.078 0.922 21 C 0.162 3.838 22 N -0.755 5.755 23 C -0.234 4.234 24 H 0.052 0.948 25 C -0.067 4.067 26 N -0.986 5.986 27 Si 0.957 3.043 28 H -0.278 1.278 29 H -0.295 1.295 30 H -0.247 1.247 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.158 0.842 37 H 0.143 0.857 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.127 0.873 45 H 0.138 0.862 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.023 0.977 50 H 0.021 0.979 51 H 0.366 0.634 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 -20.111 -26.026 33.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 H 0.116 0.884 4 C -0.004 4.004 5 N -0.321 5.321 6 C 0.387 3.613 7 O -0.450 6.450 8 C -0.192 4.192 9 C -0.227 4.227 10 C -0.064 4.064 11 C -0.126 4.126 12 C -0.194 4.194 13 C -0.198 4.198 14 N -0.063 5.063 15 C -0.069 4.069 16 N -0.106 5.106 17 C -0.043 4.043 18 C -0.154 4.154 19 C -0.103 4.103 20 H 0.096 0.904 21 C 0.036 3.964 22 N -0.401 5.401 23 C -0.365 4.365 24 H 0.070 0.930 25 C -0.258 4.258 26 N -0.637 5.637 27 Si 0.783 3.217 28 H -0.204 1.204 29 H -0.222 1.222 30 H -0.171 1.171 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.176 0.824 37 H 0.161 0.839 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.145 0.855 45 H 0.155 0.845 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.041 0.959 50 H 0.039 0.961 51 H 0.200 0.800 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.078 -19.706 -25.193 32.385 hybrid contribution 0.373 -0.118 0.125 0.411 sum -4.705 -19.824 -25.068 32.304 Atomic orbital electron populations 1.21805 0.95260 1.01185 1.01568 1.21484 0.96231 1.00026 0.93100 0.88386 1.21861 1.00426 0.79511 0.98560 1.47948 1.54236 1.11907 1.17989 1.17238 0.77250 0.83996 0.82851 1.90725 1.60290 1.64864 1.29152 1.21780 1.08760 0.96016 0.92624 1.21474 1.07053 0.93169 1.01032 1.20843 1.02999 0.97457 0.85105 1.20514 1.04388 0.95088 0.92633 1.23167 0.98804 1.03806 0.93599 1.23166 0.93316 1.03095 1.00194 1.45890 1.40241 1.10724 1.09470 1.22645 1.05843 0.87331 0.91084 1.73121 1.18194 0.94613 1.24677 1.22718 1.00887 0.98258 0.82441 1.21801 1.00840 0.95304 0.97422 1.21289 1.00506 0.94990 0.93493 0.90394 1.20819 0.95614 0.94998 0.84940 1.42705 1.57673 1.37525 1.02180 1.19036 1.22606 1.10697 0.84144 0.92978 1.25552 1.02778 1.02896 0.94572 1.69900 1.50336 1.45387 0.98041 0.85380 0.78997 0.79634 0.77644 1.20444 1.22201 1.17122 0.92682 0.92331 0.93864 0.89692 0.89377 0.82438 0.83885 0.89132 0.85844 0.85978 0.89321 0.88296 0.87907 0.85499 0.84523 0.90989 0.92354 0.91627 0.95909 0.96106 0.79981 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.39 71.98 0.60 -3.22 16 2 C -0.09 -2.26 2.72 -10.57 -0.03 -2.29 16 3 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 4 C 0.12 2.91 5.85 86.51 0.51 3.42 16 5 N -0.59 -15.95 2.40 -821.63 -1.97 -17.92 16 6 C 0.60 18.16 7.69 86.75 0.67 18.83 16 7 O -0.57 -20.03 16.37 -3.95 -0.06 -20.10 16 8 C -0.03 -0.92 6.87 42.46 0.29 -0.63 16 9 C -0.20 -4.54 9.86 22.41 0.22 -4.32 16 10 C 0.06 1.04 6.60 41.40 0.27 1.31 16 11 C -0.11 -0.97 5.94 -11.54 -0.07 -1.04 16 12 C -0.16 -1.19 10.05 30.60 0.31 -0.88 16 13 C -0.16 -1.30 10.05 30.60 0.31 -0.99 16 14 N -0.28 -4.86 3.70 -355.93 -1.32 -6.17 16 15 C 0.07 0.55 11.06 127.77 1.41 1.96 16 16 N -0.27 -6.48 8.38 -48.17 -0.40 -6.88 16 17 C 0.08 2.05 6.32 86.36 0.55 2.60 16 18 C -0.12 -3.38 4.90 30.67 0.15 -3.23 16 19 C -0.08 -2.49 1.96 -10.76 -0.02 -2.51 16 20 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 21 C 0.16 6.27 5.19 86.38 0.45 6.72 16 22 N -0.75 -35.61 5.12 -343.44 -1.76 -37.37 16 23 C -0.23 -13.61 10.47 84.03 0.88 -12.73 16 24 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 25 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 26 N -0.99 -63.98 13.97 21.65 0.30 -63.68 16 27 Si 0.96 45.33 27.74 68.60 1.90 47.24 16 28 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 29 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 30 H -0.25 -10.35 6.52 99.48 0.65 -9.71 16 31 H 0.05 1.57 6.58 -2.39 -0.02 1.55 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.28 5.97 -2.39 -0.01 1.26 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 2.28 7.04 -2.39 -0.02 2.26 16 36 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 37 H 0.14 0.52 7.16 -2.39 -0.02 0.51 16 38 H 0.09 0.92 7.94 -2.39 -0.02 0.90 16 39 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.09 0.99 7.97 -2.39 -0.02 0.97 16 42 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.13 0.17 7.10 -2.39 -0.02 0.16 16 45 H 0.14 3.52 3.76 -75.23 -0.28 3.24 16 46 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.06 1.84 6.33 -2.39 -0.02 1.83 16 48 H 0.07 2.09 7.15 -2.39 -0.02 2.07 16 49 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.02 0.85 6.74 -2.39 -0.02 0.83 16 51 H 0.37 16.28 4.71 -92.71 -0.44 15.84 16 52 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -78.71 402.15 3.82 -74.89 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.16 Total: 30.53 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 6.96 Total: -0.53 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -5.15 Total: -132.03 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.06 Total: -20.10 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.24 kcal Total: -78.71 3.82 -74.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184513066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.008 kcal (2) G-P(sol) polarization free energy of solvation -78.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds