Wall clock time and date at job start Wed Apr 1 2020 04:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.52288 * 2 1 4 4 C 1.53185 * 109.50046 * 120.08154 * 2 1 3 5 5 N 1.46932 * 108.77747 * 65.31408 * 4 2 1 6 6 C 1.34777 * 120.62928 * 233.63616 * 5 4 2 7 7 O 1.21614 * 120.00356 * 354.20260 * 6 5 4 8 8 C 1.47323 * 119.99657 * 174.20670 * 6 5 4 9 9 C 1.36575 * 126.21280 * 173.28480 * 8 6 5 10 10 N 1.34870 * 106.79050 * 179.97438 * 9 8 6 11 11 C 1.36306 * 107.86036 * 0.04672 * 10 9 8 12 12 N 1.29798 * 108.92205 * 359.66002 * 11 10 9 13 13 C 1.51099 * 123.90461 * 179.87987 * 11 10 9 14 14 C 1.53393 * 108.18647 * 344.03768 * 13 11 10 15 15 C 1.53131 * 109.25011 * 48.96340 * 14 13 11 16 16 C 1.46578 * 127.50183 * 180.10596 * 10 9 8 17 17 C 1.46927 * 118.73675 * 53.60506 * 5 4 2 18 18 C 1.53184 * 108.77811 * 306.39689 * 17 5 4 19 19 C 1.53045 * 109.49457 * 239.92153 * 2 1 3 20 20 H 1.08997 * 109.45919 * 181.39271 * 19 2 1 21 21 C 1.52997 * 109.46270 * 61.41926 * 19 2 1 22 22 N 1.46503 * 109.46989 * 174.97522 * 21 19 2 23 23 C 1.36938 * 119.99425 * 180.02562 * 22 21 19 24 24 H 1.08001 * 120.00713 * 359.97438 * 23 22 21 25 25 C 1.38815 * 119.99429 * 179.97438 * 23 22 21 26 26 N 1.31617 * 119.99723 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 120.00077 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47514 * 89.99838 * 27 25 23 29 29 H 1.48508 * 109.46765 * 210.00062 * 27 25 23 30 30 H 1.48500 * 109.47160 * 329.99300 * 27 25 23 31 31 H 1.09000 * 109.47181 * 180.08595 * 1 2 3 32 32 H 1.09002 * 109.47223 * 300.07933 * 1 2 3 33 33 H 1.08996 * 109.47628 * 60.07712 * 1 2 3 34 34 H 1.08999 * 109.59054 * 185.10359 * 4 2 1 35 35 H 1.09000 * 109.58848 * 305.38595 * 4 2 1 36 36 H 1.07996 * 126.60110 * 359.97438 * 9 8 6 37 37 H 1.08991 * 109.72129 * 103.70952 * 13 11 10 38 38 H 1.09006 * 109.72297 * 224.36669 * 13 11 10 39 39 H 1.09004 * 109.50830 * 168.89580 * 14 13 11 40 40 H 1.09003 * 109.50914 * 288.98405 * 14 13 11 41 41 H 1.09006 * 109.46084 * 50.22201 * 15 14 13 42 42 H 1.09002 * 109.46213 * 170.19240 * 15 14 13 43 43 H 1.08997 * 109.57934 * 282.58439 * 16 10 9 44 44 H 1.08992 * 109.58347 * 42.99858 * 16 10 9 45 45 H 1.09003 * 109.58402 * 66.18448 * 17 5 4 46 46 H 1.09003 * 109.58589 * 186.60617 * 17 5 4 47 47 H 1.08999 * 109.50232 * 294.68114 * 18 17 5 48 48 H 1.09000 * 109.50020 * 174.58456 * 18 17 5 49 49 H 1.09006 * 109.46945 * 294.97334 * 21 19 2 50 50 H 1.09000 * 109.46901 * 54.97312 * 21 19 2 51 51 H 0.96996 * 119.99986 * 359.97438 * 22 21 19 52 52 H 0.97002 * 120.00090 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 1.6516 -2.1382 1.1696 6 6 0.9740 -2.7218 2.1779 7 8 0.7713 -2.1095 3.2089 8 6 0.4789 -4.1015 2.0312 9 6 -0.1046 -4.8576 3.0075 10 7 -0.4054 -6.0485 2.4506 11 6 -0.0062 -6.0135 1.1478 12 7 0.5143 -4.8509 0.8981 13 6 -0.1692 -7.1666 0.1850 14 6 -0.4569 -8.4338 1.0001 15 6 -1.5719 -8.1431 2.0087 16 6 -1.0471 -7.1982 3.0947 17 6 2.0139 -2.9040 -0.0308 18 6 1.5029 -2.1558 -1.2660 19 6 2.0407 -0.7231 -1.2484 20 1 3.1304 -0.7444 -1.2354 21 6 1.5603 0.0168 -2.4984 22 7 2.1468 -0.6038 -3.6889 23 6 1.8584 -0.1075 -4.9322 24 1 1.1984 0.7411 -5.0352 25 6 2.4146 -0.6952 -6.0601 26 7 2.1370 -0.2186 -7.2551 27 14 3.5557 -2.1634 -5.8820 28 1 2.7604 -3.4167 -5.9257 29 1 4.5402 -2.1628 -6.9938 30 1 4.2738 -2.0777 -4.5850 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8893 33 1 -0.3634 0.5126 -0.8906 34 1 3.1275 -0.6463 1.2979 35 1 1.6028 -0.2715 2.1390 36 1 -0.2894 -4.5592 4.0289 37 1 -1.0010 -6.9670 -0.4903 38 1 0.7479 -7.2989 -0.3891 39 1 -0.7716 -9.2339 0.3301 40 1 0.4452 -8.7376 1.5312 41 1 -2.4125 -7.6755 1.4959 42 1 -1.8996 -9.0763 2.4668 43 1 -0.3197 -7.7226 3.7144 44 1 -1.8765 -6.8548 3.7128 45 1 3.0979 -3.0043 -0.0869 46 1 1.5553 -3.8919 0.0137 47 1 0.4132 -2.1354 -1.2541 48 1 1.8479 -2.6628 -2.1671 49 1 0.4733 -0.0384 -2.5580 50 1 1.8686 1.0609 -2.4436 51 1 2.7399 -1.3657 -3.5963 52 1 2.5259 -0.6290 -8.0433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184513131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:53 Heat of formation + Delta-G solvation = 40.136735 kcal Electronic energy + Delta-G solvation = -31519.067604 eV Core-core repulsion = 27519.679946 eV Total energy + Delta-G solvation = -3999.387658 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.77214 -40.06217 -37.95434 -36.91915 -34.96498 -33.93322 -33.14724 -31.70081 -30.50942 -30.35088 -29.03653 -27.11392 -26.90794 -24.95964 -23.68014 -22.97790 -22.57404 -22.52305 -21.01951 -19.82380 -19.47165 -18.36159 -17.63846 -17.25436 -16.65647 -16.42739 -15.75355 -15.41156 -14.96903 -14.74799 -14.60260 -14.43833 -14.20722 -14.05802 -13.99540 -13.96063 -13.66712 -13.36918 -13.25101 -12.85314 -12.55421 -12.38045 -12.31863 -12.08966 -11.76374 -11.68681 -11.58222 -11.46811 -11.29271 -11.26810 -10.90731 -10.68615 -10.54386 -10.24000 -10.12488 -10.05501 -9.99407 -9.98178 -9.50122 -9.19787 -8.79429 -8.76904 -8.32917 -7.12249 -5.69439 -3.03409 1.40573 2.13171 2.22889 3.17158 3.42871 3.45958 3.48909 3.49987 3.75823 3.93495 4.04012 4.08538 4.46825 4.62421 4.66109 4.71596 4.75415 4.80202 5.00475 5.03459 5.07586 5.12874 5.14292 5.23617 5.31691 5.41067 5.44610 5.49659 5.57117 5.61122 5.69540 5.75401 5.77750 5.80605 5.89758 5.94026 5.98328 6.03614 6.17872 6.30192 6.32813 6.47552 6.49209 6.52732 6.64201 6.71600 6.83103 6.98105 7.05191 7.48688 7.68809 8.08546 8.30641 8.50232 9.30376 10.03052 10.24076 11.49448 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.003074 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.804002 B = 9106.472886 C =11063.239728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.081 0.919 4 C 0.116 3.884 5 N -0.587 5.587 6 C 0.603 3.397 7 O -0.556 6.556 8 C -0.055 4.055 9 C 0.034 3.966 10 N -0.454 5.454 11 C 0.214 3.786 12 N -0.450 5.450 13 C -0.038 4.038 14 C -0.126 4.126 15 C -0.136 4.136 16 C 0.101 3.899 17 C 0.062 3.938 18 C -0.120 4.120 19 C -0.095 4.095 20 H 0.068 0.932 21 C 0.163 3.837 22 N -0.755 5.755 23 C -0.238 4.238 24 H 0.089 0.911 25 C 0.001 3.999 26 N -0.937 5.937 27 Si 0.883 3.117 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.277 1.277 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.187 0.813 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.153 0.847 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.029 0.971 50 H 0.024 0.976 51 H 0.360 0.640 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 -18.742 24.815 31.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.099 0.901 4 C -0.006 4.006 5 N -0.318 5.318 6 C 0.391 3.609 7 O -0.435 6.435 8 C -0.184 4.184 9 C -0.105 4.105 10 N -0.136 5.136 11 C -0.049 4.049 12 N -0.169 5.169 13 C -0.077 4.077 14 C -0.164 4.164 15 C -0.174 4.174 16 C -0.021 4.021 17 C -0.060 4.060 18 C -0.158 4.158 19 C -0.114 4.114 20 H 0.086 0.914 21 C 0.036 3.964 22 N -0.401 5.401 23 C -0.368 4.368 24 H 0.107 0.893 25 C -0.194 4.194 26 N -0.586 5.586 27 Si 0.714 3.286 28 H -0.210 1.210 29 H -0.219 1.219 30 H -0.203 1.203 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.205 0.795 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.169 0.831 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.047 0.953 50 H 0.042 0.958 51 H 0.193 0.807 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.612 -18.103 24.504 31.175 hybrid contribution 0.626 -1.105 0.629 1.417 sum -5.985 -19.208 25.132 32.193 Atomic orbital electron populations 1.21861 0.94895 1.02075 1.01394 1.21436 0.96687 0.99288 0.94151 0.90070 1.21684 0.99329 0.80539 0.99058 1.47838 1.54436 1.11172 1.18366 1.16906 0.77375 0.83660 0.82952 1.90752 1.59863 1.64488 1.28422 1.20607 1.10363 0.96572 0.90822 1.22382 1.02468 0.85218 1.00384 1.45320 1.44987 1.12403 1.10863 1.23735 1.00723 0.96260 0.84192 1.69902 1.19716 1.01974 1.25314 1.20312 1.04679 0.87999 0.94668 1.21687 0.98899 0.97597 0.98239 1.21914 0.99279 0.99652 0.96566 1.22107 0.98242 0.85432 0.96305 1.23028 1.00069 0.99792 0.83090 1.21873 1.01473 0.95194 0.97279 1.21395 1.00047 0.95369 0.94578 0.91380 1.20696 0.96225 0.94723 0.84754 1.42745 1.57240 1.37496 1.02606 1.19085 1.23725 1.12058 0.81971 0.89345 1.24664 1.00404 0.99219 0.95115 1.69707 1.48563 1.43329 0.97009 0.86548 0.81282 0.83899 0.76881 1.21048 1.21858 1.20301 0.92485 0.93403 0.91928 0.91743 0.89301 0.79547 0.88720 0.88158 0.89641 0.91018 0.90328 0.89044 0.89351 0.88786 0.92852 0.83087 0.91306 0.90721 0.95311 0.95845 0.80700 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.38 37.16 0.31 -1.78 16 2 C -0.10 -1.36 2.72 -90.50 -0.25 -1.61 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 1.61 5.81 -3.71 -0.02 1.59 16 5 N -0.59 -8.64 2.41 -174.08 -0.42 -9.06 16 6 C 0.60 9.29 7.68 -12.57 -0.10 9.20 16 7 O -0.56 -9.61 16.33 5.27 0.09 -9.53 16 8 C -0.06 -0.74 6.71 -82.97 -0.56 -1.30 16 9 C 0.03 0.35 11.33 -16.82 -0.19 0.16 16 10 N -0.45 -3.70 3.11 -113.44 -0.35 -4.05 16 11 C 0.21 2.09 7.64 -154.63 -1.18 0.91 16 12 N -0.45 -5.77 7.67 -7.01 -0.05 -5.83 16 13 C -0.04 -0.24 6.33 -27.48 -0.17 -0.41 16 14 C -0.13 -0.45 5.95 -26.46 -0.16 -0.61 16 15 C -0.14 -0.38 5.93 -26.55 -0.16 -0.54 16 16 C 0.10 0.39 6.96 -3.88 -0.03 0.36 16 17 C 0.06 0.91 6.32 -3.71 -0.02 0.89 16 18 C -0.12 -1.94 4.90 -26.61 -0.13 -2.07 16 19 C -0.09 -1.56 1.96 -90.57 -0.18 -1.74 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 21 C 0.16 3.30 5.19 -4.04 -0.02 3.28 16 22 N -0.76 -18.56 5.12 -59.90 -0.31 -18.86 16 23 C -0.24 -6.96 10.47 -15.06 -0.16 -7.11 16 24 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 25 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 26 N -0.94 -30.11 13.97 55.49 0.78 -29.34 16 27 Si 0.88 22.57 27.74 -169.99 -4.71 17.85 16 28 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 30 H -0.28 -6.67 6.52 56.52 0.37 -6.31 16 31 H 0.06 0.89 5.97 -51.93 -0.31 0.58 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.93 6.58 -51.93 -0.34 0.59 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.26 7.05 -51.93 -0.37 0.89 16 36 H 0.19 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 41 H 0.08 0.28 8.11 -51.93 -0.42 -0.15 16 42 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.15 2.21 3.66 -78.01 -0.29 1.92 16 47 H 0.07 1.16 6.34 -51.93 -0.33 0.83 16 48 H 0.07 1.31 7.15 -51.93 -0.37 0.94 16 49 H 0.03 0.60 6.74 -51.93 -0.35 0.25 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.36 8.62 4.71 -40.82 -0.19 8.43 16 52 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -36.33 393.43 -10.64 -46.97 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.48 Total: 6.77 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.10 Total: -0.84 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -0.36 Total: -67.15 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.33 -10.64 -46.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184513131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.102 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds