Wall clock time and date at job start Wed Apr 1 2020 04:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.52288 * 2 1 4 4 C 1.53185 * 109.50046 * 120.08154 * 2 1 3 5 5 N 1.46932 * 108.77747 * 65.31408 * 4 2 1 6 6 C 1.34777 * 120.62928 * 233.63616 * 5 4 2 7 7 O 1.21614 * 120.00356 * 354.20260 * 6 5 4 8 8 C 1.47323 * 119.99657 * 174.20670 * 6 5 4 9 9 C 1.36575 * 126.21280 * 173.28480 * 8 6 5 10 10 N 1.34870 * 106.79050 * 179.97438 * 9 8 6 11 11 C 1.36306 * 107.86036 * 0.04672 * 10 9 8 12 12 N 1.29798 * 108.92205 * 359.66002 * 11 10 9 13 13 C 1.51099 * 123.90461 * 179.87987 * 11 10 9 14 14 C 1.53393 * 108.18647 * 344.03768 * 13 11 10 15 15 C 1.53131 * 109.25011 * 48.96340 * 14 13 11 16 16 C 1.46578 * 127.50183 * 180.10596 * 10 9 8 17 17 C 1.46927 * 118.73675 * 53.60506 * 5 4 2 18 18 C 1.53184 * 108.77811 * 306.39689 * 17 5 4 19 19 C 1.53045 * 109.49457 * 239.92153 * 2 1 3 20 20 H 1.08997 * 109.45919 * 181.39271 * 19 2 1 21 21 C 1.52997 * 109.46270 * 61.41926 * 19 2 1 22 22 N 1.46503 * 109.46989 * 174.97522 * 21 19 2 23 23 C 1.36938 * 119.99425 * 180.02562 * 22 21 19 24 24 H 1.08001 * 120.00713 * 359.97438 * 23 22 21 25 25 C 1.38815 * 119.99429 * 179.97438 * 23 22 21 26 26 N 1.31617 * 119.99723 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 120.00077 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47514 * 89.99838 * 27 25 23 29 29 H 1.48508 * 109.46765 * 210.00062 * 27 25 23 30 30 H 1.48500 * 109.47160 * 329.99300 * 27 25 23 31 31 H 1.09000 * 109.47181 * 180.08595 * 1 2 3 32 32 H 1.09002 * 109.47223 * 300.07933 * 1 2 3 33 33 H 1.08996 * 109.47628 * 60.07712 * 1 2 3 34 34 H 1.08999 * 109.59054 * 185.10359 * 4 2 1 35 35 H 1.09000 * 109.58848 * 305.38595 * 4 2 1 36 36 H 1.07996 * 126.60110 * 359.97438 * 9 8 6 37 37 H 1.08991 * 109.72129 * 103.70952 * 13 11 10 38 38 H 1.09006 * 109.72297 * 224.36669 * 13 11 10 39 39 H 1.09004 * 109.50830 * 168.89580 * 14 13 11 40 40 H 1.09003 * 109.50914 * 288.98405 * 14 13 11 41 41 H 1.09006 * 109.46084 * 50.22201 * 15 14 13 42 42 H 1.09002 * 109.46213 * 170.19240 * 15 14 13 43 43 H 1.08997 * 109.57934 * 282.58439 * 16 10 9 44 44 H 1.08992 * 109.58347 * 42.99858 * 16 10 9 45 45 H 1.09003 * 109.58402 * 66.18448 * 17 5 4 46 46 H 1.09003 * 109.58589 * 186.60617 * 17 5 4 47 47 H 1.08999 * 109.50232 * 294.68114 * 18 17 5 48 48 H 1.09000 * 109.50020 * 174.58456 * 18 17 5 49 49 H 1.09006 * 109.46945 * 294.97334 * 21 19 2 50 50 H 1.09000 * 109.46901 * 54.97312 * 21 19 2 51 51 H 0.96996 * 119.99986 * 359.97438 * 22 21 19 52 52 H 0.97002 * 120.00090 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 1.6516 -2.1382 1.1696 6 6 0.9740 -2.7218 2.1779 7 8 0.7713 -2.1095 3.2089 8 6 0.4789 -4.1015 2.0312 9 6 -0.1046 -4.8576 3.0075 10 7 -0.4054 -6.0485 2.4506 11 6 -0.0062 -6.0135 1.1478 12 7 0.5143 -4.8509 0.8981 13 6 -0.1692 -7.1666 0.1850 14 6 -0.4569 -8.4338 1.0001 15 6 -1.5719 -8.1431 2.0087 16 6 -1.0471 -7.1982 3.0947 17 6 2.0139 -2.9040 -0.0308 18 6 1.5029 -2.1558 -1.2660 19 6 2.0407 -0.7231 -1.2484 20 1 3.1304 -0.7444 -1.2354 21 6 1.5603 0.0168 -2.4984 22 7 2.1468 -0.6038 -3.6889 23 6 1.8584 -0.1075 -4.9322 24 1 1.1984 0.7411 -5.0352 25 6 2.4146 -0.6952 -6.0601 26 7 2.1370 -0.2186 -7.2551 27 14 3.5557 -2.1634 -5.8820 28 1 2.7604 -3.4167 -5.9257 29 1 4.5402 -2.1628 -6.9938 30 1 4.2738 -2.0777 -4.5850 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8893 33 1 -0.3634 0.5126 -0.8906 34 1 3.1275 -0.6463 1.2979 35 1 1.6028 -0.2715 2.1390 36 1 -0.2894 -4.5592 4.0289 37 1 -1.0010 -6.9670 -0.4903 38 1 0.7479 -7.2989 -0.3891 39 1 -0.7716 -9.2339 0.3301 40 1 0.4452 -8.7376 1.5312 41 1 -2.4125 -7.6755 1.4959 42 1 -1.8996 -9.0763 2.4668 43 1 -0.3197 -7.7226 3.7144 44 1 -1.8765 -6.8548 3.7128 45 1 3.0979 -3.0043 -0.0869 46 1 1.5553 -3.8919 0.0137 47 1 0.4132 -2.1354 -1.2541 48 1 1.8479 -2.6628 -2.1671 49 1 0.4733 -0.0384 -2.5580 50 1 1.8686 1.0609 -2.4436 51 1 2.7399 -1.3657 -3.5963 52 1 2.5259 -0.6290 -8.0433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184513131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:51 Heat of formation + Delta-G solvation = 18.415835 kcal Electronic energy + Delta-G solvation = -31520.009493 eV Core-core repulsion = 27519.679946 eV Total energy + Delta-G solvation = -4000.329547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.49965 -41.22337 -39.19684 -37.41514 -36.67073 -34.92665 -34.30045 -33.39002 -32.19115 -31.01292 -29.65795 -28.70726 -28.01066 -25.73871 -25.07478 -24.16271 -23.76212 -23.13530 -22.57060 -20.84456 -20.09437 -19.95012 -19.10643 -18.32019 -17.50248 -17.11238 -16.86838 -16.62496 -16.41429 -15.98829 -15.64962 -15.26594 -15.20270 -15.11177 -14.95183 -14.79195 -14.68002 -14.66131 -14.49965 -14.12598 -14.01154 -13.71704 -13.57403 -13.24068 -12.90311 -12.76550 -12.67556 -12.52853 -12.19641 -12.07522 -12.02761 -11.98952 -11.86554 -11.84382 -11.63490 -11.50449 -11.28439 -11.26105 -10.94747 -10.73704 -10.24221 -9.71332 -9.36309 -9.26720 -8.01720 -5.34699 0.54807 1.31058 1.38493 1.42386 1.49658 1.63830 2.12578 2.46604 2.49791 3.10822 3.29546 3.50981 3.55812 3.62774 3.73760 3.81414 3.84695 3.92509 4.06656 4.10542 4.17442 4.30347 4.33509 4.39488 4.44861 4.48468 4.50197 4.52565 4.64826 4.72334 4.78582 4.83923 4.85844 4.92458 4.93791 4.97884 5.01201 5.04197 5.11415 5.15514 5.18055 5.19516 5.23118 5.29160 5.31105 5.52312 5.56260 5.76467 5.79717 6.14608 6.22546 6.43128 6.80558 7.09121 7.20736 7.85556 8.06232 9.20223 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.003074 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.804002 B = 9106.472886 C =11063.239728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.096 0.904 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.599 3.401 7 O -0.584 6.584 8 C -0.096 4.096 9 C 0.047 3.953 10 N -0.446 5.446 11 C 0.212 3.788 12 N -0.483 5.483 13 C -0.041 4.041 14 C -0.121 4.121 15 C -0.133 4.133 16 C 0.091 3.909 17 C 0.069 3.931 18 C -0.113 4.113 19 C -0.084 4.084 20 H 0.073 0.927 21 C 0.163 3.837 22 N -0.755 5.755 23 C -0.234 4.234 24 H 0.053 0.947 25 C -0.065 4.065 26 N -0.986 5.986 27 Si 0.955 3.045 28 H -0.274 1.274 29 H -0.294 1.294 30 H -0.252 1.252 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.205 0.795 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.059 0.941 46 H 0.157 0.843 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.022 0.978 50 H 0.021 0.979 51 H 0.366 0.634 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 -21.682 27.117 35.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.114 0.886 4 C -0.004 4.004 5 N -0.320 5.320 6 C 0.388 3.612 7 O -0.465 6.465 8 C -0.224 4.224 9 C -0.094 4.094 10 N -0.126 5.126 11 C -0.052 4.052 12 N -0.202 5.202 13 C -0.079 4.079 14 C -0.159 4.159 15 C -0.170 4.170 16 C -0.028 4.028 17 C -0.053 4.053 18 C -0.151 4.151 19 C -0.103 4.103 20 H 0.091 0.909 21 C 0.037 3.963 22 N -0.401 5.401 23 C -0.365 4.365 24 H 0.071 0.929 25 C -0.256 4.256 26 N -0.637 5.637 27 Si 0.782 3.218 28 H -0.200 1.200 29 H -0.221 1.221 30 H -0.177 1.177 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.222 0.778 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.137 0.863 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.078 0.922 46 H 0.173 0.827 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.040 0.960 50 H 0.039 0.961 51 H 0.200 0.800 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.277 -21.064 26.852 34.700 hybrid contribution 0.386 -0.174 -0.063 0.428 sum -5.891 -21.237 26.789 34.690 Atomic orbital electron populations 1.21788 0.95173 1.01178 1.01479 1.21398 0.96340 0.99877 0.93237 0.88621 1.21700 1.00114 0.80198 0.98416 1.47887 1.54394 1.11433 1.18270 1.17236 0.76887 0.84483 0.82556 1.90715 1.61019 1.65439 1.29339 1.20520 1.13116 0.96414 0.92302 1.22650 1.00737 0.85467 1.00539 1.45591 1.43963 1.12710 1.10367 1.24299 0.99523 0.96058 0.85314 1.69697 1.21437 1.03331 1.25776 1.20501 1.04689 0.88209 0.94535 1.21691 0.99395 0.96358 0.98416 1.21946 0.98547 1.00445 0.96062 1.22542 0.99103 0.84283 0.96913 1.22981 1.00290 0.99850 0.82168 1.21770 1.00671 0.95034 0.97634 1.21289 1.00195 0.95289 0.93526 0.90902 1.20813 0.95624 0.94886 0.84978 1.42719 1.57467 1.37715 1.02217 1.19044 1.22544 1.10848 0.84083 0.92907 1.25526 1.02711 1.02837 0.94560 1.69893 1.50361 1.45389 0.98017 0.85399 0.78926 0.79720 0.77753 1.20008 1.22100 1.17650 0.93858 0.92326 0.92753 0.90353 0.89476 0.77818 0.88596 0.88332 0.87938 0.90786 0.91040 0.86304 0.87519 0.87121 0.92248 0.82691 0.92510 0.91983 0.96035 0.96052 0.80032 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 8.38 71.98 0.60 -3.37 16 2 C -0.09 -2.44 2.72 -10.72 -0.03 -2.47 16 3 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.12 3.13 5.81 86.36 0.50 3.63 16 5 N -0.59 -17.04 2.41 -822.90 -1.98 -19.03 16 6 C 0.60 18.38 7.68 86.63 0.67 19.04 16 7 O -0.58 -20.14 16.33 -4.07 -0.07 -20.20 16 8 C -0.10 -2.55 6.71 40.52 0.27 -2.27 16 9 C 0.05 0.92 11.33 83.84 0.95 1.87 16 10 N -0.45 -6.39 3.11 -512.80 -1.60 -7.99 16 11 C 0.21 3.88 7.64 138.05 1.05 4.94 16 12 N -0.48 -12.21 7.67 -176.08 -1.35 -13.56 16 13 C -0.04 -0.45 6.33 30.11 0.19 -0.26 16 14 C -0.12 -0.51 5.95 30.77 0.18 -0.32 16 15 C -0.13 -0.29 5.93 30.71 0.18 -0.11 16 16 C 0.09 0.41 6.96 86.44 0.60 1.02 16 17 C 0.07 1.98 6.32 86.36 0.55 2.52 16 18 C -0.11 -3.60 4.90 30.67 0.15 -3.45 16 19 C -0.08 -2.69 1.96 -10.76 -0.02 -2.71 16 20 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 21 C 0.16 6.60 5.19 86.38 0.45 7.05 16 22 N -0.76 -36.95 5.12 -343.44 -1.76 -38.71 16 23 C -0.23 -13.93 10.47 84.03 0.88 -13.05 16 24 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 25 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 26 N -0.99 -64.79 13.97 21.65 0.30 -64.49 16 27 Si 0.96 46.45 27.74 68.60 1.90 48.36 16 28 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 29 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 30 H -0.25 -11.10 6.52 99.48 0.65 -10.45 16 31 H 0.04 1.35 5.97 -2.39 -0.01 1.34 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.62 6.58 -2.39 -0.02 1.60 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 2.38 7.05 -2.39 -0.02 2.37 16 36 H 0.21 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.07 0.31 8.12 -2.39 -0.02 0.29 16 41 H 0.07 0.30 8.11 -2.38 -0.02 0.28 16 42 H 0.12 -0.32 8.14 -2.39 -0.02 -0.33 16 43 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 44 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.16 4.49 3.66 -53.89 -0.20 4.29 16 47 H 0.06 1.94 6.34 -2.39 -0.02 1.92 16 48 H 0.06 2.13 7.15 -2.39 -0.02 2.11 16 49 H 0.02 0.92 6.74 -2.38 -0.02 0.90 16 50 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.37 17.00 4.71 -92.71 -0.44 16.57 16 52 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -80.57 393.43 3.34 -77.23 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.24 Total: 29.83 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 7.65 Total: 8.56 kcal Atomic # 7 Polarization: -137.38 SS G_CDS: -6.39 Total: -143.77 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.07 Total: -20.20 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.90 Total: 48.36 kcal Total: -80.57 3.34 -77.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184513131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.646 kcal (2) G-P(sol) polarization free energy of solvation -80.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds