Wall clock time and date at job start Wed Apr 1 2020 04:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.52650 * 2 1 4 4 C 1.53191 * 109.49713 * 120.08029 * 2 1 3 5 5 N 1.46931 * 108.77592 * 174.58828 * 4 2 1 6 6 C 1.34770 * 120.63104 * 126.39285 * 5 4 2 7 7 O 1.21588 * 120.00275 * 354.17344 * 6 5 4 8 8 C 1.47548 * 119.99879 * 174.17877 * 6 5 4 9 9 C 1.40353 * 120.47253 * 319.19060 * 8 6 5 10 10 C 1.36861 * 118.49096 * 179.72964 * 9 8 6 11 11 C 1.39393 * 119.37738 * 0.54790 * 10 9 8 12 12 N 1.38454 * 119.54259 * 179.69608 * 11 10 9 13 13 C 1.46506 * 119.99706 * 5.01642 * 12 11 10 14 14 C 1.46496 * 120.00575 * 185.02093 * 12 11 10 15 15 N 1.32601 * 120.92373 * 359.71704 * 11 10 9 16 16 C 1.31676 * 121.63838 * 359.97438 * 15 11 10 17 17 C 1.46930 * 118.76235 * 306.40741 * 5 4 2 18 18 C 1.53194 * 108.77113 * 53.56008 * 17 5 4 19 19 C 1.53038 * 109.50057 * 239.91817 * 2 1 3 20 20 H 1.09007 * 109.46043 * 298.70645 * 19 2 1 21 21 C 1.52997 * 109.44849 * 58.66705 * 19 2 1 22 22 N 1.46503 * 109.47226 * 185.06214 * 21 19 2 23 23 C 1.36943 * 120.00099 * 179.97438 * 22 21 19 24 24 H 1.07997 * 119.99894 * 0.02562 * 23 22 21 25 25 C 1.38808 * 120.00189 * 180.02562 * 23 22 21 26 26 N 1.31612 * 120.00146 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 119.99828 * 0.02562 * 25 23 22 28 28 H 1.48506 * 109.47292 * 89.99820 * 27 25 23 29 29 H 1.48499 * 109.47367 * 209.99593 * 27 25 23 30 30 H 1.48498 * 109.47340 * 329.99895 * 27 25 23 31 31 H 1.08997 * 109.47419 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47367 * 300.08411 * 1 2 3 33 33 H 1.09000 * 109.47335 * 60.08181 * 1 2 3 34 34 H 1.08997 * 109.58500 * 294.36946 * 4 2 1 35 35 H 1.08998 * 109.59006 * 54.65482 * 4 2 1 36 36 H 1.07999 * 120.75443 * 359.97438 * 9 8 6 37 37 H 1.08002 * 120.30878 * 180.23820 * 10 9 8 38 38 H 1.09003 * 109.47061 * 90.00018 * 13 12 11 39 39 H 1.09002 * 109.47450 * 210.00296 * 13 12 11 40 40 H 1.08996 * 109.47253 * 330.00541 * 13 12 11 41 41 H 1.09007 * 109.47161 * 59.99849 * 14 12 11 42 42 H 1.09005 * 109.47184 * 179.97438 * 14 12 11 43 43 H 1.08993 * 109.47192 * 299.99779 * 14 12 11 44 44 H 1.07998 * 119.74305 * 179.97438 * 16 15 11 45 45 H 1.08999 * 109.56861 * 293.79138 * 17 5 4 46 46 H 1.09002 * 109.61501 * 173.35905 * 17 5 4 47 47 H 1.09003 * 109.49606 * 185.44692 * 18 17 5 48 48 H 1.09000 * 109.50060 * 65.38121 * 18 17 5 49 49 H 1.08991 * 109.47606 * 305.06477 * 21 19 2 50 50 H 1.09006 * 109.46844 * 65.06843 * 21 19 2 51 51 H 0.96992 * 120.00107 * 0.02562 * 22 21 19 52 52 H 0.97001 * 120.00294 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7238 1.2496 5 7 3.5045 -0.8291 1.1696 6 6 4.2810 -0.3860 2.1781 7 8 3.7806 0.2016 3.1177 8 6 5.7383 -0.6138 2.1420 9 6 6.2562 -1.8404 1.6982 10 6 7.6146 -2.0059 1.6761 11 6 8.4374 -0.9645 2.1023 12 7 9.8118 -1.1305 2.0873 13 6 10.3962 -2.3501 1.5238 14 6 10.6818 -0.0869 2.6350 15 7 7.9221 0.1828 2.5223 16 6 6.6214 0.3854 2.5537 17 6 4.1058 -1.4263 -0.0307 18 6 3.5708 -0.6951 -1.2659 19 6 2.0408 -0.7231 -1.2483 20 1 1.6966 -1.7573 -1.2353 21 6 1.5036 -0.0230 -2.4982 22 7 1.8917 -0.7835 -3.6887 23 6 1.5199 -0.3460 -4.9320 24 1 0.9411 0.5599 -5.0348 25 6 1.8871 -1.0668 -6.0600 26 7 1.5303 -0.6460 -7.2548 27 14 2.8878 -2.6341 -5.8819 28 1 1.9707 -3.7939 -5.7438 29 1 3.7394 -2.8170 -7.0846 30 1 3.7487 -2.5374 -4.6759 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5152 0.8893 33 1 -0.3634 0.5126 -0.8907 34 1 1.7637 -0.1579 2.1388 35 1 1.6032 -1.7206 1.2994 36 1 5.5979 -2.6343 1.3776 37 1 8.0449 -2.9365 1.3363 38 1 10.5852 -2.2046 0.4602 39 1 11.3344 -2.5722 2.0325 40 1 9.7039 -3.1810 1.6594 41 1 10.4466 0.0666 3.6882 42 1 11.7233 -0.3933 2.5365 43 1 10.5230 0.8425 2.0881 44 1 6.2348 1.3318 2.9020 45 1 3.8386 -2.4815 -0.0864 46 1 5.1901 -1.3236 0.0136 47 1 3.9334 -1.1898 -2.1670 48 1 3.9159 0.3388 -1.2547 49 1 0.4167 0.0358 -2.4430 50 1 1.9194 0.9829 -2.5582 51 1 2.4113 -1.5973 -3.5963 52 1 1.7866 -1.1499 -8.0431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184712354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:44 Heat of formation + Delta-G solvation = 31.827973 kcal Electronic energy + Delta-G solvation = -30840.797924 eV Core-core repulsion = 26841.049971 eV Total energy + Delta-G solvation = -3999.747953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.10016 -39.89829 -38.08035 -36.80179 -35.18680 -33.89347 -32.75877 -32.03258 -30.93521 -30.67085 -28.70279 -27.28614 -27.03942 -25.78398 -23.78612 -23.55454 -22.64490 -22.02897 -21.20175 -20.24883 -19.45666 -17.82046 -17.70287 -17.34129 -16.89292 -16.18093 -15.76157 -15.19547 -15.11400 -14.88427 -14.84564 -14.39748 -14.25609 -14.19070 -13.77860 -13.62656 -13.42595 -13.24152 -13.07356 -12.94794 -12.85359 -12.71419 -12.68414 -12.42007 -12.26693 -11.98372 -11.88787 -11.69920 -11.32961 -10.97660 -10.88962 -10.51850 -10.48567 -10.37009 -10.16329 -10.10014 -10.07284 -9.92717 -9.60436 -9.58065 -8.89188 -8.66245 -7.96147 -7.21642 -5.77068 -3.12024 0.73286 1.02968 2.46174 2.65419 2.92420 3.33424 3.36420 3.42750 3.62621 4.10511 4.37134 4.43989 4.57586 4.59278 4.69122 4.76763 4.78094 4.82540 4.87893 4.92683 4.95290 5.02185 5.17852 5.22630 5.23621 5.36136 5.37657 5.44932 5.46447 5.53205 5.59077 5.62872 5.72023 5.74063 5.79405 5.81064 5.84388 5.92069 6.09268 6.16076 6.20970 6.24669 6.37541 6.40721 6.43647 6.50701 6.75112 6.83289 6.89029 7.30659 7.76630 8.00075 8.08008 8.42161 9.21556 9.93806 10.14000 11.41659 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010112 B = 0.002860 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.445543 B = 9786.625259 C =11907.125035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.118 3.882 5 N -0.604 5.604 6 C 0.573 3.427 7 O -0.544 6.544 8 C -0.246 4.246 9 C -0.002 4.002 10 C -0.245 4.245 11 C 0.418 3.582 12 N -0.612 5.612 13 C 0.090 3.910 14 C 0.102 3.898 15 N -0.544 5.544 16 C 0.208 3.792 17 C 0.099 3.901 18 C -0.128 4.128 19 C -0.093 4.093 20 H 0.071 0.929 21 C 0.160 3.840 22 N -0.755 5.755 23 C -0.241 4.241 24 H 0.089 0.911 25 C 0.002 3.998 26 N -0.935 5.935 27 Si 0.885 3.115 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.164 0.836 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.033 0.967 50 H 0.025 0.975 51 H 0.359 0.641 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.481 -4.472 22.604 27.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.004 4.004 5 N -0.336 5.336 6 C 0.362 3.638 7 O -0.423 6.423 8 C -0.255 4.255 9 C -0.027 4.027 10 C -0.269 4.269 11 C 0.182 3.818 12 N -0.324 5.324 13 C -0.053 4.053 14 C -0.040 4.040 15 N -0.261 5.261 16 C 0.049 3.951 17 C -0.024 4.024 18 C -0.166 4.166 19 C -0.112 4.112 20 H 0.090 0.910 21 C 0.033 3.967 22 N -0.401 5.401 23 C -0.371 4.371 24 H 0.107 0.893 25 C -0.193 4.193 26 N -0.584 5.584 27 Si 0.715 3.285 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.181 0.819 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.087 0.913 49 H 0.051 0.949 50 H 0.043 0.957 51 H 0.192 0.808 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.912 -3.405 23.183 28.324 hybrid contribution 0.242 -1.878 -0.547 1.971 sum 16.155 -5.283 22.636 28.307 Atomic orbital electron populations 1.21838 0.94231 1.02189 1.02278 1.21441 0.96205 1.00079 0.93880 0.90641 1.21716 0.78421 1.00870 0.99378 1.48009 1.06985 1.60725 1.17864 1.18009 0.85826 0.78054 0.81954 1.90766 1.75011 1.41864 1.34616 1.20523 0.94436 0.97962 1.12547 1.21277 0.94835 0.95856 0.90760 1.21126 0.93746 1.00578 1.11496 1.18503 0.84987 0.89239 0.89054 1.46209 1.01899 1.20411 1.63889 1.21831 0.98905 0.85912 0.98607 1.21570 0.92727 0.90763 0.98974 1.67331 1.14669 1.21480 1.22626 1.22545 0.86270 0.97686 0.88635 1.22131 0.98639 0.97160 0.84437 1.21962 0.96158 1.01535 0.96949 1.21396 0.94623 1.00197 0.94956 0.91042 1.20743 0.97245 0.94114 0.84554 1.42730 1.66135 1.28601 1.02641 1.19069 1.28229 1.07868 0.81945 0.89292 1.24675 1.00789 0.98729 0.95128 1.69698 1.51057 1.40557 0.97045 0.86546 0.80410 0.84753 0.76770 1.21134 1.21792 1.20404 0.92535 0.92832 0.91188 0.88996 0.91472 0.84253 0.84404 0.92469 0.90751 0.90779 0.92335 0.91122 0.92000 0.81880 0.91255 0.89366 0.89973 0.91328 0.94900 0.95723 0.80786 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.82 37.15 0.33 -1.37 16 2 C -0.10 -1.20 2.41 -90.51 -0.22 -1.42 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.40 5.73 -3.71 -0.02 1.37 16 5 N -0.60 -7.31 2.97 -173.99 -0.52 -7.83 16 6 C 0.57 7.69 7.32 -12.47 -0.09 7.60 16 7 O -0.54 -8.90 16.36 5.29 0.09 -8.82 16 8 C -0.25 -2.87 5.11 -104.81 -0.54 -3.41 16 9 C 0.00 -0.01 7.45 -39.28 -0.29 -0.31 16 10 C -0.25 -2.17 9.20 -39.65 -0.36 -2.54 16 11 C 0.42 4.27 7.36 -155.28 -1.14 3.13 16 12 N -0.61 -4.86 3.37 -189.70 -0.64 -5.50 16 13 C 0.09 0.42 10.24 59.85 0.61 1.04 16 14 C 0.10 0.68 10.16 59.84 0.61 1.28 16 15 N -0.54 -6.37 9.54 -12.14 -0.12 -6.49 16 16 C 0.21 2.45 10.81 -17.13 -0.19 2.26 16 17 C 0.10 1.09 4.93 -3.71 -0.02 1.07 16 18 C -0.13 -1.75 5.25 -26.61 -0.14 -1.89 16 19 C -0.09 -1.34 1.73 -90.58 -0.16 -1.49 16 20 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 21 C 0.16 3.00 5.41 -4.04 -0.02 2.98 16 22 N -0.76 -17.48 5.12 -59.91 -0.31 -17.79 16 23 C -0.24 -6.78 10.47 -15.06 -0.16 -6.94 16 24 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 25 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 26 N -0.94 -29.35 13.97 55.49 0.78 -28.58 16 27 Si 0.88 21.71 27.74 -169.99 -4.71 17.00 16 28 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 30 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.07 0.88 6.29 -51.93 -0.33 0.56 16 34 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.14 1.09 6.72 -52.49 -0.35 0.74 16 37 H 0.14 0.87 5.99 -52.49 -0.31 0.56 16 38 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.22 7.92 -51.93 -0.41 -0.19 16 40 H 0.07 0.29 5.95 -51.93 -0.31 -0.02 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.29 7.79 -51.93 -0.40 -0.12 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 46 H 0.09 0.91 4.77 -51.93 -0.25 0.66 16 47 H 0.08 1.25 7.15 -51.93 -0.37 0.88 16 48 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.03 0.63 6.14 -51.93 -0.32 0.31 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.36 8.01 4.71 -40.82 -0.19 7.82 16 52 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -34.80 402.12 -9.54 -44.34 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.28 Total: 6.27 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.89 Total: 1.33 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.81 Total: -66.18 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.80 -9.54 -44.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184712354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.172 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds