Wall clock time and date at job start Wed Apr 1 2020 04:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.52650 * 2 1 4 4 C 1.53191 * 109.49713 * 120.08029 * 2 1 3 5 5 N 1.46931 * 108.77592 * 174.58828 * 4 2 1 6 6 C 1.34770 * 120.63104 * 126.39285 * 5 4 2 7 7 O 1.21588 * 120.00275 * 354.17344 * 6 5 4 8 8 C 1.47548 * 119.99879 * 174.17877 * 6 5 4 9 9 C 1.40353 * 120.47253 * 319.19060 * 8 6 5 10 10 C 1.36861 * 118.49096 * 179.72964 * 9 8 6 11 11 C 1.39393 * 119.37738 * 0.54790 * 10 9 8 12 12 N 1.38454 * 119.54259 * 179.69608 * 11 10 9 13 13 C 1.46506 * 119.99706 * 5.01642 * 12 11 10 14 14 C 1.46496 * 120.00575 * 185.02093 * 12 11 10 15 15 N 1.32601 * 120.92373 * 359.71704 * 11 10 9 16 16 C 1.31676 * 121.63838 * 359.97438 * 15 11 10 17 17 C 1.46930 * 118.76235 * 306.40741 * 5 4 2 18 18 C 1.53194 * 108.77113 * 53.56008 * 17 5 4 19 19 C 1.53038 * 109.50057 * 239.91817 * 2 1 3 20 20 H 1.09007 * 109.46043 * 298.70645 * 19 2 1 21 21 C 1.52997 * 109.44849 * 58.66705 * 19 2 1 22 22 N 1.46503 * 109.47226 * 185.06214 * 21 19 2 23 23 C 1.36943 * 120.00099 * 179.97438 * 22 21 19 24 24 H 1.07997 * 119.99894 * 0.02562 * 23 22 21 25 25 C 1.38808 * 120.00189 * 180.02562 * 23 22 21 26 26 N 1.31612 * 120.00146 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 119.99828 * 0.02562 * 25 23 22 28 28 H 1.48506 * 109.47292 * 89.99820 * 27 25 23 29 29 H 1.48499 * 109.47367 * 209.99593 * 27 25 23 30 30 H 1.48498 * 109.47340 * 329.99895 * 27 25 23 31 31 H 1.08997 * 109.47419 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47367 * 300.08411 * 1 2 3 33 33 H 1.09000 * 109.47335 * 60.08181 * 1 2 3 34 34 H 1.08997 * 109.58500 * 294.36946 * 4 2 1 35 35 H 1.08998 * 109.59006 * 54.65482 * 4 2 1 36 36 H 1.07999 * 120.75443 * 359.97438 * 9 8 6 37 37 H 1.08002 * 120.30878 * 180.23820 * 10 9 8 38 38 H 1.09003 * 109.47061 * 90.00018 * 13 12 11 39 39 H 1.09002 * 109.47450 * 210.00296 * 13 12 11 40 40 H 1.08996 * 109.47253 * 330.00541 * 13 12 11 41 41 H 1.09007 * 109.47161 * 59.99849 * 14 12 11 42 42 H 1.09005 * 109.47184 * 179.97438 * 14 12 11 43 43 H 1.08993 * 109.47192 * 299.99779 * 14 12 11 44 44 H 1.07998 * 119.74305 * 179.97438 * 16 15 11 45 45 H 1.08999 * 109.56861 * 293.79138 * 17 5 4 46 46 H 1.09002 * 109.61501 * 173.35905 * 17 5 4 47 47 H 1.09003 * 109.49606 * 185.44692 * 18 17 5 48 48 H 1.09000 * 109.50060 * 65.38121 * 18 17 5 49 49 H 1.08991 * 109.47606 * 305.06477 * 21 19 2 50 50 H 1.09006 * 109.46844 * 65.06843 * 21 19 2 51 51 H 0.96992 * 120.00107 * 0.02562 * 22 21 19 52 52 H 0.97001 * 120.00294 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7238 1.2496 5 7 3.5045 -0.8291 1.1696 6 6 4.2810 -0.3860 2.1781 7 8 3.7806 0.2016 3.1177 8 6 5.7383 -0.6138 2.1420 9 6 6.2562 -1.8404 1.6982 10 6 7.6146 -2.0059 1.6761 11 6 8.4374 -0.9645 2.1023 12 7 9.8118 -1.1305 2.0873 13 6 10.3962 -2.3501 1.5238 14 6 10.6818 -0.0869 2.6350 15 7 7.9221 0.1828 2.5223 16 6 6.6214 0.3854 2.5537 17 6 4.1058 -1.4263 -0.0307 18 6 3.5708 -0.6951 -1.2659 19 6 2.0408 -0.7231 -1.2483 20 1 1.6966 -1.7573 -1.2353 21 6 1.5036 -0.0230 -2.4982 22 7 1.8917 -0.7835 -3.6887 23 6 1.5199 -0.3460 -4.9320 24 1 0.9411 0.5599 -5.0348 25 6 1.8871 -1.0668 -6.0600 26 7 1.5303 -0.6460 -7.2548 27 14 2.8878 -2.6341 -5.8819 28 1 1.9707 -3.7939 -5.7438 29 1 3.7394 -2.8170 -7.0846 30 1 3.7487 -2.5374 -4.6759 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5152 0.8893 33 1 -0.3634 0.5126 -0.8907 34 1 1.7637 -0.1579 2.1388 35 1 1.6032 -1.7206 1.2994 36 1 5.5979 -2.6343 1.3776 37 1 8.0449 -2.9365 1.3363 38 1 10.5852 -2.2046 0.4602 39 1 11.3344 -2.5722 2.0325 40 1 9.7039 -3.1810 1.6594 41 1 10.4466 0.0666 3.6882 42 1 11.7233 -0.3933 2.5365 43 1 10.5230 0.8425 2.0881 44 1 6.2348 1.3318 2.9020 45 1 3.8386 -2.4815 -0.0864 46 1 5.1901 -1.3236 0.0136 47 1 3.9334 -1.1898 -2.1670 48 1 3.9159 0.3388 -1.2547 49 1 0.4167 0.0358 -2.4430 50 1 1.9194 0.9829 -2.5582 51 1 2.4113 -1.5973 -3.5963 52 1 1.7866 -1.1499 -8.0431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184712354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:43 Heat of formation + Delta-G solvation = 9.906256 kcal Electronic energy + Delta-G solvation = -30841.748521 eV Core-core repulsion = 26841.049971 eV Total energy + Delta-G solvation = -4000.698550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.94833 -40.79102 -39.19674 -37.45543 -36.69895 -35.17886 -33.81703 -33.36111 -32.33162 -31.66788 -29.15419 -28.69606 -27.92967 -26.59062 -25.25238 -24.31397 -23.93606 -22.83812 -22.57688 -21.32776 -20.49535 -19.60409 -18.49049 -18.28574 -17.72257 -17.15389 -16.64760 -16.37233 -16.21707 -15.88343 -15.80432 -15.63050 -15.41407 -15.12490 -14.96441 -14.71803 -14.52034 -14.27496 -14.25588 -14.01844 -13.82579 -13.59130 -13.40129 -13.24422 -13.16974 -13.08186 -12.91391 -12.80491 -12.71064 -12.65566 -12.15492 -11.96909 -11.83858 -11.61706 -11.55258 -11.26004 -11.20762 -10.95976 -10.84667 -10.74615 -10.45134 -9.66664 -9.25833 -8.61724 -8.00756 -5.34418 -0.06536 0.30543 1.38332 1.44485 1.51710 1.67847 1.90241 2.02641 2.51084 2.83741 3.30448 3.38515 3.51959 3.56269 3.71907 3.81495 3.89366 3.94563 3.98622 4.06609 4.12389 4.28773 4.31491 4.40177 4.43266 4.50464 4.52110 4.61669 4.68324 4.69451 4.74863 4.77217 4.81833 4.82992 4.88514 4.92949 4.94202 5.00115 5.08373 5.10415 5.11517 5.21343 5.26352 5.36304 5.41307 5.51229 5.61208 5.77630 5.88988 6.22902 6.24119 6.34710 7.02814 7.09746 7.10391 7.85828 8.07336 9.21161 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010112 B = 0.002860 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.445543 B = 9786.625259 C =11907.125035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.060 0.940 4 C 0.121 3.879 5 N -0.601 5.601 6 C 0.573 3.427 7 O -0.582 6.582 8 C -0.262 4.262 9 C 0.001 3.999 10 C -0.239 4.239 11 C 0.403 3.597 12 N -0.613 5.613 13 C 0.083 3.917 14 C 0.100 3.900 15 N -0.566 5.566 16 C 0.195 3.805 17 C 0.105 3.895 18 C -0.126 4.126 19 C -0.082 4.082 20 H 0.084 0.916 21 C 0.158 3.842 22 N -0.753 5.753 23 C -0.235 4.235 24 H 0.049 0.951 25 C -0.069 4.069 26 N -0.988 5.988 27 Si 0.959 3.041 28 H -0.276 1.276 29 H -0.298 1.298 30 H -0.242 1.242 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.100 0.900 43 H 0.047 0.953 44 H 0.157 0.843 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.031 0.969 50 H 0.010 0.990 51 H 0.368 0.632 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.498 -7.880 24.047 30.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.078 0.922 4 C -0.001 4.001 5 N -0.332 5.332 6 C 0.363 3.637 7 O -0.464 6.464 8 C -0.270 4.270 9 C -0.024 4.024 10 C -0.263 4.263 11 C 0.166 3.834 12 N -0.324 5.324 13 C -0.059 4.059 14 C -0.042 4.042 15 N -0.284 5.284 16 C 0.036 3.964 17 C -0.017 4.017 18 C -0.164 4.164 19 C -0.101 4.101 20 H 0.103 0.897 21 C 0.033 3.967 22 N -0.400 5.400 23 C -0.366 4.366 24 H 0.068 0.932 25 C -0.260 4.260 26 N -0.638 5.638 27 Si 0.785 3.215 28 H -0.202 1.202 29 H -0.225 1.225 30 H -0.166 1.166 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.180 0.820 37 H 0.186 0.814 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.118 0.882 43 H 0.066 0.934 44 H 0.174 0.826 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.049 0.951 50 H 0.028 0.972 51 H 0.202 0.798 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.955 -6.824 24.664 31.261 hybrid contribution -0.363 -0.688 -1.002 1.269 sum 17.592 -7.512 23.662 30.427 Atomic orbital electron populations 1.21808 0.93404 1.02890 1.02172 1.21341 0.96847 0.99130 0.93469 0.92194 1.21708 0.78433 1.01730 0.98188 1.48059 1.07057 1.60273 1.17837 1.18280 0.86553 0.77304 0.81596 1.90741 1.75807 1.43647 1.36181 1.20423 0.93230 0.99141 1.14219 1.21503 0.95516 0.95309 0.90075 1.21436 0.93337 1.01173 1.10324 1.18923 0.86301 0.89234 0.88924 1.46558 1.01237 1.21473 1.63133 1.22085 0.99972 0.84812 0.98983 1.21631 0.94160 0.90310 0.98132 1.67309 1.14556 1.22801 1.23753 1.22519 0.86704 0.97923 0.89254 1.22192 0.99146 0.97966 0.82350 1.21910 0.95434 1.01029 0.98076 1.21294 0.95194 1.00351 0.93218 0.89737 1.20875 0.97219 0.93547 0.85106 1.42665 1.66070 1.29163 1.02062 1.19019 1.26971 1.06381 0.84254 0.93247 1.25597 1.02758 1.03108 0.94503 1.69905 1.53168 1.42633 0.98125 0.85357 0.78913 0.79457 0.77775 1.20236 1.22486 1.16622 0.91402 0.91443 0.92821 0.89858 0.89274 0.81990 0.81381 0.91989 0.88687 0.89665 0.93200 0.88180 0.93423 0.82590 0.88437 0.88255 0.90856 0.92906 0.95081 0.97226 0.79819 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.82 71.98 0.63 -2.50 16 2 C -0.09 -2.08 2.41 -10.72 -0.03 -2.10 16 3 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 4 C 0.12 2.61 5.73 86.36 0.49 3.10 16 5 N -0.60 -13.30 2.97 -822.64 -2.45 -15.74 16 6 C 0.57 14.85 7.32 86.70 0.63 15.49 16 7 O -0.58 -19.17 16.36 -3.99 -0.07 -19.24 16 8 C -0.26 -5.82 5.11 -19.99 -0.10 -5.92 16 9 C 0.00 0.02 7.45 22.46 0.17 0.19 16 10 C -0.24 -3.48 9.20 22.22 0.20 -3.28 16 11 C 0.40 7.53 7.36 133.25 0.98 8.51 16 12 N -0.61 -8.33 3.37 -754.09 -2.54 -10.88 16 13 C 0.08 0.49 10.24 127.77 1.31 1.79 16 14 C 0.10 1.18 10.16 127.77 1.30 2.48 16 15 N -0.57 -13.13 9.54 -192.34 -1.84 -14.96 16 16 C 0.20 4.65 10.81 85.03 0.92 5.57 16 17 C 0.11 1.98 4.93 86.36 0.43 2.40 16 18 C -0.13 -3.19 5.25 30.67 0.16 -3.03 16 19 C -0.08 -2.20 1.73 -10.77 -0.02 -2.21 16 20 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 21 C 0.16 5.88 5.41 86.38 0.47 6.35 16 22 N -0.75 -34.22 5.12 -343.45 -1.76 -35.98 16 23 C -0.24 -13.45 10.47 84.03 0.88 -12.57 16 24 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 25 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 26 N -0.99 -63.54 13.97 21.65 0.30 -63.24 16 27 Si 0.96 43.95 27.74 68.60 1.90 45.86 16 28 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 29 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 30 H -0.24 -9.57 6.52 99.48 0.65 -8.93 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.05 1.33 6.29 -2.39 -0.02 1.32 16 34 H 0.08 1.99 7.00 -2.39 -0.02 1.98 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.16 1.81 6.72 -2.91 -0.02 1.79 16 37 H 0.17 1.35 5.99 -2.91 -0.02 1.33 16 38 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.09 0.18 7.92 -2.39 -0.02 0.17 16 40 H 0.08 0.32 5.95 -2.39 -0.01 0.30 16 41 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.10 0.55 7.79 -2.38 -0.02 0.53 16 43 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 45 H 0.10 1.37 8.13 -2.39 -0.02 1.35 16 46 H 0.10 1.70 4.77 -2.39 -0.01 1.69 16 47 H 0.07 2.01 7.15 -2.39 -0.02 1.99 16 48 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.03 1.18 6.14 -2.39 -0.01 1.17 16 50 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 51 H 0.37 15.42 4.71 -92.71 -0.44 14.98 16 52 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -78.45 402.12 2.88 -75.57 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.43 Total: 27.89 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 8.90 Total: 10.72 kcal Atomic # 7 Polarization: -132.52 SS G_CDS: -8.28 Total: -140.80 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.07 Total: -19.24 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.90 Total: 45.86 kcal Total: -78.45 2.88 -75.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184712354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.475 kcal (2) G-P(sol) polarization free energy of solvation -78.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds