Wall clock time and date at job start Wed Apr 1 2020 04:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.52466 * 2 1 4 4 C 1.53190 * 109.49379 * 120.07473 * 2 1 3 5 5 N 1.46926 * 108.77682 * 65.32015 * 4 2 1 6 6 C 1.34776 * 120.63301 * 233.58605 * 5 4 2 7 7 O 1.21577 * 119.99919 * 354.98005 * 6 5 4 8 8 C 1.47710 * 120.00538 * 174.98297 * 6 5 4 9 9 N 1.32209 * 126.67431 * 5.44630 * 8 6 5 10 10 N 1.28840 * 110.14956 * 179.86665 * 9 8 6 11 11 H 0.97003 * 124.98186 * 180.02562 * 10 9 8 12 12 C 1.34308 * 110.04110 * 0.33742 * 10 9 8 13 13 C 1.35584 * 107.21986 * 359.87350 * 12 10 9 14 14 C 1.50378 * 124.62257 * 179.78907 * 13 12 10 15 15 C 1.53469 * 108.28447 * 343.80666 * 14 13 12 16 16 C 1.53108 * 109.51186 * 49.47584 * 15 14 13 17 17 C 1.50720 * 128.90229 * 179.97438 * 12 10 9 18 18 C 1.46924 * 118.74053 * 53.60306 * 5 4 2 19 19 C 1.53188 * 108.77663 * 306.39770 * 18 5 4 20 20 C 1.53031 * 109.49968 * 239.91378 * 2 1 3 21 21 H 1.09001 * 109.46116 * 181.40677 * 20 2 1 22 22 C 1.53006 * 109.46174 * 61.43361 * 20 2 1 23 23 N 1.46499 * 109.47137 * 174.99655 * 22 20 2 24 24 C 1.36934 * 119.99847 * 180.27323 * 23 22 20 25 25 H 1.08003 * 120.00042 * 359.73371 * 24 23 22 26 26 C 1.38816 * 120.00263 * 179.72535 * 24 23 22 27 27 N 1.31623 * 119.99653 * 0.02562 * 26 24 23 28 28 Si 1.86795 * 120.00233 * 180.02562 * 26 24 23 29 29 H 1.48494 * 109.47092 * 0.02562 * 28 26 24 30 30 H 1.48500 * 109.47160 * 120.00595 * 28 26 24 31 31 H 1.48495 * 109.47098 * 240.00384 * 28 26 24 32 32 H 1.08996 * 109.46932 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47036 * 300.08853 * 1 2 3 34 34 H 1.09001 * 109.46690 * 60.08847 * 1 2 3 35 35 H 1.09003 * 109.58839 * 185.10333 * 4 2 1 36 36 H 1.09004 * 109.58961 * 305.38857 * 4 2 1 37 37 H 1.09000 * 109.70128 * 103.50901 * 14 13 12 38 38 H 1.08998 * 109.69590 * 224.10644 * 14 13 12 39 39 H 1.08999 * 109.46870 * 289.46035 * 15 14 13 40 40 H 1.09004 * 109.45586 * 169.47868 * 15 14 13 41 41 H 1.08996 * 109.44506 * 169.88431 * 16 15 14 42 42 H 1.08997 * 109.44560 * 49.98672 * 16 15 14 43 43 H 1.09002 * 109.68755 * 282.97284 * 17 12 10 44 44 H 1.08994 * 109.69353 * 43.51266 * 17 12 10 45 45 H 1.09004 * 109.58805 * 66.18231 * 18 5 4 46 46 H 1.08993 * 109.59213 * 186.60548 * 18 5 4 47 47 H 1.09001 * 109.49947 * 294.68180 * 19 18 5 48 48 H 1.09003 * 109.49895 * 174.58730 * 19 18 5 49 49 H 1.08999 * 109.46506 * 55.00522 * 22 20 2 50 50 H 1.08993 * 109.46859 * 295.00040 * 22 20 2 51 51 H 0.97003 * 120.00200 * 0.02562 * 23 22 20 52 52 H 0.97000 * 119.99597 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 1.6515 -2.1380 1.1698 6 6 0.9747 -2.7219 2.1785 7 8 0.7605 -2.1051 3.2040 8 6 0.4932 -4.1112 2.0381 9 7 0.7357 -4.9332 1.0314 10 7 0.1626 -6.0685 1.2374 11 1 0.2005 -6.8280 0.6351 12 6 -0.5009 -6.0441 2.4049 13 6 -0.3169 -4.8144 2.9455 14 6 -0.8966 -4.3622 4.2573 15 6 -2.0171 -5.3350 4.6493 16 6 -1.5084 -6.7744 4.5335 17 6 -1.3129 -7.1347 3.0551 18 6 2.0140 -2.9040 -0.0305 19 6 1.5031 -2.1559 -1.2658 20 6 2.0409 -0.7231 -1.2482 21 1 3.1306 -0.7447 -1.2350 22 6 1.5608 0.0168 -2.4984 23 7 2.1470 -0.6042 -3.6887 24 6 1.8629 -0.1049 -4.9317 25 1 1.2033 0.7441 -5.0349 26 6 2.4228 -0.6897 -6.0593 27 7 3.2264 -1.7246 -5.9336 28 14 2.0359 -0.0081 -7.7549 29 1 1.1143 1.1489 -7.6247 30 1 3.2935 0.4325 -8.4101 31 1 1.3926 -1.0637 -8.5777 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5152 0.8892 34 1 -0.3633 0.5125 -0.8908 35 1 3.1275 -0.6462 1.2982 36 1 1.6026 -0.2713 2.1391 37 1 -0.1210 -4.3672 5.0230 38 1 -1.3033 -3.3564 4.1520 39 1 -2.8685 -5.1959 3.9831 40 1 -2.3242 -5.1399 5.6768 41 1 -2.2355 -7.4532 4.9791 42 1 -0.5575 -6.8666 5.0583 43 1 -2.2832 -7.2123 2.5644 44 1 -0.7838 -8.0842 2.9747 45 1 3.0980 -3.0043 -0.0864 46 1 1.5555 -3.8918 0.0141 47 1 0.4134 -2.1355 -1.2539 48 1 1.8482 -2.6630 -2.1668 49 1 1.8698 1.0607 -2.4437 50 1 0.4738 -0.0378 -2.5579 51 1 2.7392 -1.3669 -3.5961 52 1 3.6174 -2.1335 -6.7216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184712864.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:12 Heat of formation + Delta-G solvation = 42.648825 kcal Electronic energy + Delta-G solvation = -31463.605611 eV Core-core repulsion = 27464.326885 eV Total energy + Delta-G solvation = -3999.278726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.09148 -40.06738 -37.88622 -37.23047 -34.85724 -33.48927 -32.72362 -31.61241 -30.27272 -30.19276 -29.84078 -26.96206 -26.80200 -24.26934 -24.03762 -23.14323 -22.85763 -22.42108 -21.17172 -19.65885 -19.34735 -18.27213 -17.98327 -17.10894 -16.68374 -16.25672 -15.71013 -15.20731 -14.88008 -14.81712 -14.36931 -14.17568 -14.09588 -13.90989 -13.78594 -13.57344 -13.43671 -13.29944 -13.16992 -12.80733 -12.51071 -12.39129 -12.32700 -12.10176 -11.47478 -11.37549 -11.22334 -11.13271 -11.00951 -10.95321 -10.87456 -10.74157 -10.67250 -10.25446 -10.08315 -10.07078 -9.92486 -9.59323 -9.53403 -9.47221 -8.86059 -8.82398 -8.41045 -6.85966 -5.73457 -3.00785 1.43037 1.88664 2.53841 3.11476 3.40213 3.44660 3.50505 3.52594 4.13643 4.26318 4.43810 4.51566 4.61969 4.82793 4.86274 4.95957 5.08021 5.09215 5.12411 5.14236 5.22783 5.28132 5.38964 5.47392 5.53771 5.58473 5.60594 5.69472 5.77311 5.79974 5.81488 5.82022 5.91419 5.99752 6.02250 6.03085 6.08970 6.17824 6.20376 6.31924 6.35224 6.44534 6.48964 6.58314 6.63941 6.76768 6.86585 6.95882 7.04256 7.47150 7.73850 7.73984 8.24363 8.46223 9.57198 10.16899 10.51579 11.49730 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.002463 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.732695 B =11365.112133 C =12412.039867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.081 0.919 4 C 0.118 3.882 5 N -0.589 5.589 6 C 0.601 3.399 7 O -0.540 6.540 8 C 0.004 3.996 9 N -0.257 5.257 10 N -0.377 5.377 11 H 0.444 0.556 12 C 0.012 3.988 13 C -0.144 4.144 14 C -0.041 4.041 15 C -0.122 4.122 16 C -0.114 4.114 17 C -0.048 4.048 18 C 0.072 3.928 19 C -0.122 4.122 20 C -0.090 4.090 21 H 0.070 0.930 22 C 0.158 3.842 23 N -0.732 5.732 24 C -0.234 4.234 25 H 0.069 0.931 26 C -0.016 4.016 27 N -0.934 5.934 28 Si 0.905 3.095 29 H -0.281 1.281 30 H -0.292 1.292 31 H -0.292 1.292 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.136 0.864 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.016 0.984 50 H 0.021 0.979 51 H 0.383 0.617 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 -11.744 23.028 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.005 4.005 5 N -0.321 5.321 6 C 0.387 3.613 7 O -0.416 6.416 8 C -0.155 4.155 9 N -0.093 5.093 10 N -0.088 5.088 11 H 0.289 0.711 12 C -0.115 4.115 13 C -0.155 4.155 14 C -0.079 4.079 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.087 4.087 18 C -0.051 4.051 19 C -0.160 4.160 20 C -0.109 4.109 21 H 0.088 0.912 22 C 0.031 3.969 23 N -0.376 5.376 24 C -0.366 4.366 25 H 0.087 0.913 26 C -0.212 4.212 27 N -0.584 5.584 28 Si 0.737 3.263 29 H -0.206 1.206 30 H -0.219 1.219 31 H -0.220 1.220 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.152 0.848 47 H 0.082 0.918 48 H 0.102 0.898 49 H 0.034 0.966 50 H 0.038 0.962 51 H 0.217 0.783 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.446 -11.325 22.444 26.520 hybrid contribution -0.143 -0.264 -1.001 1.045 sum -8.589 -11.589 21.442 25.843 Atomic orbital electron populations 1.21858 0.95006 1.01954 1.01361 1.21464 0.96591 0.99369 0.94296 0.90063 1.21706 0.99507 0.80092 0.99163 1.47929 1.54457 1.11485 1.18250 1.16962 0.77688 0.83467 0.83194 1.90747 1.58483 1.63926 1.28442 1.21636 1.04264 0.95680 0.93911 1.73538 1.19169 0.93179 1.23374 1.43249 1.36399 1.12274 1.16856 0.71143 1.21171 1.02124 0.98514 0.89719 1.19839 1.03357 0.92758 0.99500 1.19961 0.96960 0.99216 0.91771 1.21677 0.98285 0.94173 1.01796 1.21561 1.02068 0.97214 0.94386 1.20249 0.98341 0.94349 0.95768 1.22828 1.00673 0.98230 0.83387 1.21908 1.01040 0.95634 0.97412 1.21326 1.00186 0.95017 0.94340 0.91163 1.20716 0.95852 0.94576 0.85755 1.42398 1.56942 1.37380 1.00883 1.19286 1.22699 1.10648 0.83924 0.91266 1.24723 1.00226 0.98487 0.97770 1.69670 1.35834 1.24526 1.28342 0.86132 0.77373 0.77992 0.84827 1.20619 1.21937 1.21959 0.92635 0.93353 0.92018 0.91497 0.89178 0.90609 0.89919 0.91673 0.91172 0.90913 0.91294 0.89836 0.90257 0.91853 0.84787 0.91762 0.89768 0.96582 0.96153 0.78296 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.38 37.16 0.31 -1.74 16 2 C -0.10 -1.37 2.72 -90.50 -0.25 -1.62 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.12 1.59 5.81 -3.71 -0.02 1.57 16 5 N -0.59 -8.50 2.41 -173.93 -0.42 -8.92 16 6 C 0.60 9.18 7.70 -12.39 -0.10 9.09 16 7 O -0.54 -9.14 15.34 5.30 0.08 -9.06 16 8 C 0.00 0.06 6.89 -82.99 -0.57 -0.51 16 9 N -0.26 -3.18 8.60 33.28 0.29 -2.89 16 10 N -0.38 -3.39 6.82 33.42 0.23 -3.16 16 11 H 0.44 2.43 8.96 -190.21 -1.71 0.72 16 12 C 0.01 0.11 7.12 -82.45 -0.59 -0.48 16 13 C -0.14 -1.66 5.99 -104.88 -0.63 -2.29 16 14 C -0.04 -0.41 5.51 -27.80 -0.15 -0.56 16 15 C -0.12 -0.83 5.91 -26.43 -0.16 -0.98 16 16 C -0.11 -0.61 5.89 -26.46 -0.16 -0.77 16 17 C -0.05 -0.26 6.31 -27.66 -0.17 -0.43 16 18 C 0.07 1.03 6.33 -3.71 -0.02 1.01 16 19 C -0.12 -1.98 4.90 -26.61 -0.13 -2.11 16 20 C -0.09 -1.49 1.96 -90.58 -0.18 -1.66 16 21 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 22 C 0.16 3.24 5.19 -4.04 -0.02 3.22 16 23 N -0.73 -18.66 5.32 -59.91 -0.32 -18.98 16 24 C -0.23 -6.64 9.99 -15.06 -0.15 -6.79 16 25 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 26 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 27 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 28 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 29 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 31 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 32 H 0.05 0.84 5.97 -51.93 -0.31 0.53 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.24 7.04 -51.93 -0.37 0.87 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.94 7.79 -51.93 -0.40 0.54 16 39 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.14 1.89 3.70 -117.02 -0.43 1.46 16 47 H 0.06 1.08 6.33 -51.93 -0.33 0.75 16 48 H 0.08 1.55 7.15 -51.93 -0.37 1.18 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.02 0.43 6.73 -51.93 -0.35 0.08 16 51 H 0.38 10.18 6.84 -40.82 -0.28 9.90 16 52 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 393.56 15.07 5.93 5.93 Total: -1.00 -33.89 393.56 -11.52 -45.40 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -9.93 Total: 7.33 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -3.08 Total: -5.64 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.50 Total: -61.62 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.89 -11.52 -45.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184712864.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.053 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds