Wall clock time and date at job start Wed Apr 1 2020 04:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.52466 * 2 1 4 4 C 1.53190 * 109.49379 * 120.07473 * 2 1 3 5 5 N 1.46926 * 108.77682 * 65.32015 * 4 2 1 6 6 C 1.34776 * 120.63301 * 233.58605 * 5 4 2 7 7 O 1.21577 * 119.99919 * 354.98005 * 6 5 4 8 8 C 1.47710 * 120.00538 * 174.98297 * 6 5 4 9 9 N 1.32209 * 126.67431 * 5.44630 * 8 6 5 10 10 N 1.28840 * 110.14956 * 179.86665 * 9 8 6 11 11 H 0.97003 * 124.98186 * 180.02562 * 10 9 8 12 12 C 1.34308 * 110.04110 * 0.33742 * 10 9 8 13 13 C 1.35584 * 107.21986 * 359.87350 * 12 10 9 14 14 C 1.50378 * 124.62257 * 179.78907 * 13 12 10 15 15 C 1.53469 * 108.28447 * 343.80666 * 14 13 12 16 16 C 1.53108 * 109.51186 * 49.47584 * 15 14 13 17 17 C 1.50720 * 128.90229 * 179.97438 * 12 10 9 18 18 C 1.46924 * 118.74053 * 53.60306 * 5 4 2 19 19 C 1.53188 * 108.77663 * 306.39770 * 18 5 4 20 20 C 1.53031 * 109.49968 * 239.91378 * 2 1 3 21 21 H 1.09001 * 109.46116 * 181.40677 * 20 2 1 22 22 C 1.53006 * 109.46174 * 61.43361 * 20 2 1 23 23 N 1.46499 * 109.47137 * 174.99655 * 22 20 2 24 24 C 1.36934 * 119.99847 * 180.27323 * 23 22 20 25 25 H 1.08003 * 120.00042 * 359.73371 * 24 23 22 26 26 C 1.38816 * 120.00263 * 179.72535 * 24 23 22 27 27 N 1.31623 * 119.99653 * 0.02562 * 26 24 23 28 28 Si 1.86795 * 120.00233 * 180.02562 * 26 24 23 29 29 H 1.48494 * 109.47092 * 0.02562 * 28 26 24 30 30 H 1.48500 * 109.47160 * 120.00595 * 28 26 24 31 31 H 1.48495 * 109.47098 * 240.00384 * 28 26 24 32 32 H 1.08996 * 109.46932 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47036 * 300.08853 * 1 2 3 34 34 H 1.09001 * 109.46690 * 60.08847 * 1 2 3 35 35 H 1.09003 * 109.58839 * 185.10333 * 4 2 1 36 36 H 1.09004 * 109.58961 * 305.38857 * 4 2 1 37 37 H 1.09000 * 109.70128 * 103.50901 * 14 13 12 38 38 H 1.08998 * 109.69590 * 224.10644 * 14 13 12 39 39 H 1.08999 * 109.46870 * 289.46035 * 15 14 13 40 40 H 1.09004 * 109.45586 * 169.47868 * 15 14 13 41 41 H 1.08996 * 109.44506 * 169.88431 * 16 15 14 42 42 H 1.08997 * 109.44560 * 49.98672 * 16 15 14 43 43 H 1.09002 * 109.68755 * 282.97284 * 17 12 10 44 44 H 1.08994 * 109.69353 * 43.51266 * 17 12 10 45 45 H 1.09004 * 109.58805 * 66.18231 * 18 5 4 46 46 H 1.08993 * 109.59213 * 186.60548 * 18 5 4 47 47 H 1.09001 * 109.49947 * 294.68180 * 19 18 5 48 48 H 1.09003 * 109.49895 * 174.58730 * 19 18 5 49 49 H 1.08999 * 109.46506 * 55.00522 * 22 20 2 50 50 H 1.08993 * 109.46859 * 295.00040 * 22 20 2 51 51 H 0.97003 * 120.00200 * 0.02562 * 23 22 20 52 52 H 0.97000 * 119.99597 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 1.6515 -2.1380 1.1698 6 6 0.9747 -2.7219 2.1785 7 8 0.7605 -2.1051 3.2040 8 6 0.4932 -4.1112 2.0381 9 7 0.7357 -4.9332 1.0314 10 7 0.1626 -6.0685 1.2374 11 1 0.2005 -6.8280 0.6351 12 6 -0.5009 -6.0441 2.4049 13 6 -0.3169 -4.8144 2.9455 14 6 -0.8966 -4.3622 4.2573 15 6 -2.0171 -5.3350 4.6493 16 6 -1.5084 -6.7744 4.5335 17 6 -1.3129 -7.1347 3.0551 18 6 2.0140 -2.9040 -0.0305 19 6 1.5031 -2.1559 -1.2658 20 6 2.0409 -0.7231 -1.2482 21 1 3.1306 -0.7447 -1.2350 22 6 1.5608 0.0168 -2.4984 23 7 2.1470 -0.6042 -3.6887 24 6 1.8629 -0.1049 -4.9317 25 1 1.2033 0.7441 -5.0349 26 6 2.4228 -0.6897 -6.0593 27 7 3.2264 -1.7246 -5.9336 28 14 2.0359 -0.0081 -7.7549 29 1 1.1143 1.1489 -7.6247 30 1 3.2935 0.4325 -8.4101 31 1 1.3926 -1.0637 -8.5777 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5152 0.8892 34 1 -0.3633 0.5125 -0.8908 35 1 3.1275 -0.6462 1.2982 36 1 1.6026 -0.2713 2.1391 37 1 -0.1210 -4.3672 5.0230 38 1 -1.3033 -3.3564 4.1520 39 1 -2.8685 -5.1959 3.9831 40 1 -2.3242 -5.1399 5.6768 41 1 -2.2355 -7.4532 4.9791 42 1 -0.5575 -6.8666 5.0583 43 1 -2.2832 -7.2123 2.5644 44 1 -0.7838 -8.0842 2.9747 45 1 3.0980 -3.0043 -0.0864 46 1 1.5555 -3.8918 0.0141 47 1 0.4134 -2.1355 -1.2539 48 1 1.8482 -2.6630 -2.1668 49 1 1.8698 1.0607 -2.4437 50 1 0.4738 -0.0378 -2.5579 51 1 2.7392 -1.3669 -3.5961 52 1 3.6174 -2.1335 -6.7216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184712864.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:11 Heat of formation + Delta-G solvation = 22.190912 kcal Electronic energy + Delta-G solvation = -31464.492733 eV Core-core repulsion = 27464.326885 eV Total energy + Delta-G solvation = -4000.165848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.91984 -41.26982 -39.17934 -37.83581 -36.54668 -34.91837 -33.76117 -33.04354 -31.95240 -30.94258 -30.55962 -28.50339 -28.02413 -25.78351 -24.78068 -24.58124 -24.08085 -23.10589 -22.65156 -20.77601 -20.04675 -19.65808 -18.89530 -18.84632 -17.82066 -17.13256 -16.90329 -16.75687 -16.15950 -15.82451 -15.56668 -15.46158 -15.30121 -15.05450 -14.82178 -14.69364 -14.56813 -14.36960 -14.16775 -13.96714 -13.86193 -13.63062 -13.49145 -12.98779 -12.97539 -12.85462 -12.69350 -12.52757 -12.18101 -12.04031 -11.91910 -11.82025 -11.71537 -11.68282 -11.59294 -11.53138 -11.24179 -11.17499 -10.93786 -10.64187 -10.39475 -9.68545 -9.56050 -8.97003 -7.94711 -5.22526 0.45430 1.08810 1.46470 1.47050 1.57225 1.74088 2.11359 2.30800 2.55855 3.24849 3.38639 3.63586 3.67653 3.74755 3.84631 3.85812 4.05264 4.09408 4.16238 4.23749 4.26534 4.33038 4.35996 4.46399 4.52925 4.60764 4.65343 4.67718 4.70757 4.76323 4.78190 4.83832 4.96109 4.97971 5.01751 5.05910 5.10541 5.17506 5.18848 5.19787 5.22968 5.26604 5.32748 5.34184 5.48421 5.50246 5.52643 5.55364 5.67492 6.14016 6.28212 6.34102 6.83767 7.12063 7.34447 8.11190 8.35380 9.29066 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.002463 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.732695 B =11365.112133 C =12412.039867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.097 0.903 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.596 3.404 7 O -0.564 6.564 8 C -0.026 4.026 9 N -0.277 5.277 10 N -0.362 5.362 11 H 0.460 0.540 12 C 0.032 3.968 13 C -0.170 4.170 14 C -0.040 4.040 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.047 4.047 18 C 0.080 3.920 19 C -0.111 4.111 20 C -0.079 4.079 21 H 0.066 0.934 22 C 0.160 3.840 23 N -0.742 5.742 24 C -0.243 4.243 25 H 0.072 0.928 26 C -0.076 4.076 27 N -0.968 5.968 28 Si 0.972 3.028 29 H -0.268 1.268 30 H -0.293 1.293 31 H -0.292 1.292 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.142 0.858 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.018 0.982 50 H 0.019 0.981 51 H 0.375 0.625 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.986 -12.940 23.827 28.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.115 0.885 4 C -0.004 4.004 5 N -0.321 5.321 6 C 0.384 3.616 7 O -0.442 6.442 8 C -0.184 4.184 9 N -0.113 5.113 10 N -0.075 5.075 11 H 0.308 0.692 12 C -0.097 4.097 13 C -0.180 4.180 14 C -0.078 4.078 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.085 4.085 18 C -0.043 4.043 19 C -0.150 4.150 20 C -0.098 4.098 21 H 0.084 0.916 22 C 0.034 3.966 23 N -0.385 5.385 24 C -0.374 4.374 25 H 0.090 0.910 26 C -0.268 4.268 27 N -0.619 5.619 28 Si 0.801 3.199 29 H -0.193 1.193 30 H -0.220 1.220 31 H -0.220 1.220 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.083 0.917 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.085 0.915 46 H 0.159 0.841 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.035 0.965 50 H 0.036 0.964 51 H 0.207 0.793 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.620 -12.503 23.251 28.097 hybrid contribution 0.173 0.079 -1.200 1.215 sum -9.447 -12.424 22.050 27.015 Atomic orbital electron populations 1.21793 0.94991 1.01156 1.01663 1.21413 0.96464 0.99897 0.93080 0.88513 1.21746 1.00261 0.79686 0.98681 1.47961 1.54331 1.11781 1.18018 1.17250 0.77275 0.84215 0.82873 1.90717 1.59420 1.64784 1.29267 1.21582 1.05959 0.95423 0.95419 1.73335 1.20277 0.94216 1.23465 1.43316 1.35218 1.11818 1.17180 0.69206 1.21702 1.00700 0.98522 0.88784 1.20150 1.03919 0.93808 1.00152 1.19941 0.97733 0.99007 0.91161 1.21664 0.96914 0.94497 1.02408 1.21586 1.02543 0.96395 0.94486 1.20479 0.98744 0.93916 0.95404 1.22749 1.00790 0.98350 0.82420 1.21748 1.00385 0.95490 0.97334 1.21209 0.99842 0.95021 0.93762 0.91560 1.20832 0.95392 0.94704 0.85712 1.42581 1.56975 1.37309 1.01650 1.19653 1.22129 1.10434 0.85230 0.90989 1.25535 1.00647 0.99134 1.01466 1.69820 1.37119 1.25903 1.29074 0.85093 0.77128 0.77557 0.80119 1.19266 1.21985 1.21965 0.93979 0.92084 0.92591 0.90254 0.89071 0.91435 0.92298 0.91661 0.89985 0.88326 0.91725 0.88091 0.87660 0.91498 0.84129 0.92557 0.92219 0.96452 0.96357 0.79278 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.38 71.98 0.60 -3.28 16 2 C -0.09 -2.44 2.72 -10.72 -0.03 -2.47 16 3 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.12 3.14 5.81 86.36 0.50 3.65 16 5 N -0.59 -17.12 2.41 -822.47 -1.98 -19.11 16 6 C 0.60 18.63 7.70 86.75 0.67 19.30 16 7 O -0.56 -19.64 15.34 -3.96 -0.06 -19.70 16 8 C -0.03 -0.73 6.89 42.14 0.29 -0.44 16 9 N -0.28 -6.74 8.60 -48.62 -0.42 -7.16 16 10 N -0.36 -5.97 6.82 -48.17 -0.33 -6.30 16 11 H 0.46 4.08 8.96 -219.80 -1.97 2.10 16 12 C 0.03 0.50 7.12 41.57 0.30 0.80 16 13 C -0.17 -3.87 5.99 -20.03 -0.12 -3.99 16 14 C -0.04 -0.81 5.51 29.90 0.16 -0.64 16 15 C -0.12 -1.41 5.91 30.79 0.18 -1.22 16 16 C -0.11 -0.86 5.89 30.77 0.18 -0.68 16 17 C -0.05 -0.34 6.31 29.99 0.19 -0.15 16 18 C 0.08 2.32 6.33 86.36 0.55 2.87 16 19 C -0.11 -3.70 4.90 30.67 0.15 -3.55 16 20 C -0.08 -2.64 1.96 -10.77 -0.02 -2.66 16 21 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 22 C 0.16 6.58 5.19 86.38 0.45 7.02 16 23 N -0.74 -38.41 5.32 -343.45 -1.83 -40.24 16 24 C -0.24 -13.82 9.99 84.04 0.84 -12.98 16 25 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 26 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 27 N -0.97 -59.63 13.06 21.65 0.28 -59.35 16 28 Si 0.97 46.76 29.55 68.60 2.03 48.78 16 29 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 30 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 31 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 32 H 0.04 1.28 5.97 -2.39 -0.01 1.27 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.61 6.58 -2.39 -0.02 1.60 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 2.46 7.04 -2.39 -0.02 2.44 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.42 7.79 -2.39 -0.02 1.41 16 39 H 0.06 0.79 8.12 -2.39 -0.02 0.77 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.06 0.58 8.12 -2.39 -0.02 0.56 16 43 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.14 4.01 3.70 -86.62 -0.32 3.69 16 47 H 0.06 1.94 6.33 -2.39 -0.02 1.93 16 48 H 0.06 2.28 7.15 -2.39 -0.02 2.26 16 49 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.02 0.78 6.73 -2.39 -0.02 0.76 16 51 H 0.37 20.44 6.84 -92.71 -0.63 19.81 16 52 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -74.06 393.56 1.09 -72.97 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -1.96 Total: 32.46 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.36 Total: -2.36 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -4.27 Total: -132.16 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.06 Total: -19.70 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -74.06 1.09 -72.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184712864.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.161 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds