Wall clock time and date at job start Wed Apr 1 2020 04:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.52279 * 2 1 4 4 C 1.53198 * 109.49586 * 120.07303 * 2 1 3 5 5 N 1.46919 * 108.77745 * 174.58690 * 4 2 1 6 6 C 1.34772 * 120.63243 * 126.36639 * 5 4 2 7 7 O 1.21689 * 119.99949 * 353.03566 * 6 5 4 8 8 C 1.46761 * 120.00377 * 173.02724 * 6 5 4 9 9 C 1.36836 * 126.91181 * 335.47264 * 8 6 5 10 10 N 1.33451 * 107.83577 * 179.81560 * 9 8 6 11 11 C 1.30559 * 109.68571 * 0.42359 * 10 9 8 12 12 N 1.34873 * 108.98435 * 359.76868 * 11 10 9 13 13 C 1.46446 * 124.98801 * 179.90429 * 12 11 10 14 14 C 1.53261 * 108.82343 * 342.94508 * 13 12 11 15 15 C 1.53160 * 109.44178 * 50.22486 * 14 13 12 16 16 C 1.51108 * 127.09358 * 179.77585 * 11 10 9 17 17 C 1.46927 * 118.73980 * 306.39554 * 5 4 2 18 18 C 1.53194 * 108.77493 * 53.60385 * 17 5 4 19 19 C 1.53036 * 109.49722 * 239.91230 * 2 1 3 20 20 H 1.08996 * 109.46511 * 298.68936 * 19 2 1 21 21 C 1.52999 * 109.46208 * 58.66534 * 19 2 1 22 22 N 1.46491 * 109.47026 * 184.99725 * 21 19 2 23 23 C 1.36941 * 119.99936 * 180.27858 * 22 21 19 24 24 H 1.07999 * 120.00007 * 359.71831 * 23 22 21 25 25 C 1.38812 * 120.00130 * 179.72662 * 23 22 21 26 26 N 1.31619 * 119.99983 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99834 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47193 * 89.99960 * 27 25 23 29 29 H 1.48497 * 109.47250 * 209.99624 * 27 25 23 30 30 H 1.48497 * 109.47456 * 329.99799 * 27 25 23 31 31 H 1.09000 * 109.47198 * 180.08355 * 1 2 3 32 32 H 1.09004 * 109.47448 * 300.08870 * 1 2 3 33 33 H 1.09005 * 109.46620 * 60.08882 * 1 2 3 34 34 H 1.09002 * 109.58742 * 294.37568 * 4 2 1 35 35 H 1.08997 * 109.58522 * 54.65683 * 4 2 1 36 36 H 1.08001 * 126.07845 * 359.96435 * 9 8 6 37 37 H 1.09003 * 109.57878 * 102.74938 * 13 12 11 38 38 H 1.09007 * 109.57451 * 223.14232 * 13 12 11 39 39 H 1.09001 * 109.47474 * 170.21521 * 14 13 12 40 40 H 1.09001 * 109.47112 * 290.23358 * 14 13 12 41 41 H 1.08997 * 109.50986 * 50.58925 * 15 14 13 42 42 H 1.08997 * 109.51459 * 170.74823 * 15 14 13 43 43 H 1.09004 * 109.70937 * 44.27021 * 16 11 10 44 44 H 1.09001 * 109.71268 * 283.64969 * 16 11 10 45 45 H 1.08999 * 109.58915 * 173.38800 * 17 5 4 46 46 H 1.08994 * 109.58555 * 293.82233 * 17 5 4 47 47 H 1.09002 * 109.49977 * 185.41155 * 18 17 5 48 48 H 1.09000 * 109.49681 * 65.31934 * 18 17 5 49 49 H 1.09001 * 109.46944 * 64.99984 * 21 19 2 50 50 H 1.09001 * 109.46883 * 305.00082 * 21 19 2 51 51 H 0.97000 * 120.00387 * 359.97438 * 22 21 19 52 52 H 0.97001 * 119.99847 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 3.5046 -0.8290 1.1698 6 6 4.2811 -0.3854 2.1781 7 8 3.7830 0.2214 3.1080 8 6 5.7273 -0.6340 2.1547 9 6 6.3775 -1.6405 1.4939 10 7 7.6843 -1.5061 1.7287 11 6 7.8879 -0.4775 2.5066 12 7 6.7015 0.0943 2.7974 13 6 6.5236 1.2737 3.6470 14 6 7.7971 1.4847 4.4732 15 6 9.0165 1.4541 3.5470 16 6 9.2159 0.0269 3.0217 17 6 4.1053 -1.4267 -0.0304 18 6 3.5709 -0.6951 -1.2658 19 6 2.0408 -0.7232 -1.2482 20 1 1.6970 -1.7574 -1.2350 21 6 1.5038 -0.0235 -2.4984 22 7 1.8932 -0.7835 -3.6886 23 6 1.5272 -0.3429 -4.9325 24 1 0.9474 0.5625 -5.0356 25 6 1.9010 -1.0599 -6.0607 26 7 2.6078 -2.1631 -5.9350 27 14 1.4010 -0.4592 -7.7573 28 1 2.4496 0.4472 -8.2904 29 1 1.2425 -1.6219 -8.6673 30 1 0.1135 0.2747 -7.6630 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5152 0.8892 33 1 -0.3633 0.5125 -0.8908 34 1 1.7637 -0.1577 2.1390 35 1 1.6033 -1.7205 1.2996 36 1 5.9155 -2.4059 0.8880 37 1 6.3435 2.1494 3.0233 38 1 5.6763 1.1182 4.3150 39 1 7.7476 2.4499 4.9772 40 1 7.8843 0.6911 5.2153 41 1 8.8539 2.1313 2.7086 42 1 9.9022 1.7652 4.1009 43 1 9.9462 0.0318 2.2125 44 1 9.5655 -0.6166 3.8291 45 1 5.1896 -1.3245 0.0141 46 1 3.8375 -2.4817 -0.0863 47 1 3.9335 -1.1899 -2.1668 48 1 3.9160 0.3387 -1.2539 49 1 1.9186 0.9827 -2.5580 50 1 0.4167 0.0343 -2.4437 51 1 2.4142 -1.5965 -3.5961 52 1 2.8694 -2.6640 -6.7234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184990334.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:22 Heat of formation + Delta-G solvation = 32.635749 kcal Electronic energy + Delta-G solvation = -31290.469785 eV Core-core repulsion = 27290.756859 eV Total energy + Delta-G solvation = -3999.712926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.73025 -40.10795 -37.94705 -37.04678 -35.04678 -33.67301 -33.47899 -32.00747 -30.35982 -30.31066 -29.34989 -26.94951 -26.57444 -24.70912 -24.10807 -23.01659 -22.59984 -21.83484 -21.30451 -20.32554 -19.51337 -19.01770 -17.37682 -17.05673 -16.50531 -16.42105 -15.92015 -15.18825 -14.96756 -14.83027 -14.65357 -14.55547 -14.46102 -14.08734 -14.02611 -13.81855 -13.52062 -13.27204 -13.21615 -12.81459 -12.58079 -12.39498 -12.17032 -11.92916 -11.77863 -11.70856 -11.62684 -11.56967 -11.46664 -10.98824 -10.88715 -10.80965 -10.51746 -10.38075 -10.22455 -10.16933 -9.96642 -9.93004 -9.77691 -9.62159 -8.85099 -8.75441 -8.47863 -6.89068 -5.75561 -3.03397 1.17005 2.18456 2.62244 2.99952 3.15042 3.44128 3.49430 3.50924 3.89485 4.09112 4.15436 4.25012 4.39305 4.59501 4.74895 4.83090 4.88096 4.93708 4.95658 4.98643 5.08603 5.09177 5.18016 5.22621 5.29693 5.32401 5.37301 5.45092 5.48486 5.53489 5.59062 5.64935 5.67863 5.78204 5.86213 5.91003 5.92843 6.01121 6.09088 6.21980 6.29513 6.32344 6.34315 6.47338 6.50649 6.64619 6.81214 6.84298 6.94466 7.27107 7.71312 7.72107 8.00532 8.43935 9.55006 10.13494 10.48067 11.47429 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.002494 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.436150 B =11222.225042 C =12419.003362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.072 0.928 4 C 0.121 3.879 5 N -0.592 5.592 6 C 0.595 3.405 7 O -0.553 6.553 8 C -0.079 4.079 9 C 0.029 3.971 10 N -0.490 5.490 11 C 0.227 3.773 12 N -0.421 5.421 13 C 0.099 3.901 14 C -0.135 4.135 15 C -0.128 4.128 16 C -0.035 4.035 17 C 0.082 3.918 18 C -0.124 4.124 19 C -0.089 4.089 20 H 0.073 0.927 21 C 0.157 3.843 22 N -0.731 5.731 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.934 5.934 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.189 0.811 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.062 0.938 49 H 0.015 0.985 50 H 0.024 0.976 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.147 5.324 23.584 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.001 4.001 5 N -0.323 5.323 6 C 0.384 3.616 7 O -0.433 6.433 8 C -0.196 4.196 9 C -0.124 4.124 10 N -0.208 5.208 11 C -0.035 4.035 12 N -0.102 5.102 13 C -0.023 4.023 14 C -0.173 4.173 15 C -0.166 4.166 16 C -0.074 4.074 17 C -0.039 4.039 18 C -0.162 4.162 19 C -0.108 4.108 20 H 0.092 0.908 21 C 0.029 3.971 22 N -0.376 5.376 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.210 4.210 26 N -0.582 5.582 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.206 0.794 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.081 0.919 49 H 0.033 0.967 50 H 0.042 0.958 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.352 5.388 23.739 26.452 hybrid contribution -0.834 0.482 -0.867 1.296 sum 9.519 5.871 22.871 25.459 Atomic orbital electron populations 1.21832 0.94290 1.02241 1.02072 1.21457 0.96141 0.99917 0.94116 0.90945 1.21750 0.77811 1.01133 0.99424 1.47779 1.06961 1.60160 1.17423 1.16773 0.83931 0.78630 0.82292 1.90765 1.75066 1.41986 1.35495 1.20585 0.90773 1.00632 1.07584 1.23066 0.89273 0.99227 1.00870 1.69982 1.17345 1.17167 1.16299 1.23479 0.88511 0.92854 0.98693 1.45130 1.06102 1.23134 1.35849 1.22161 1.00470 0.85912 0.93730 1.21948 0.93126 1.03996 0.98243 1.21719 0.98692 0.96338 0.99865 1.20296 0.89705 0.95841 1.01588 1.22561 0.99741 0.97619 0.84026 1.21927 0.95966 1.01107 0.97214 1.21352 0.94772 1.00219 0.94485 0.90845 1.20747 0.96642 0.94020 0.85662 1.42373 1.65507 1.28904 1.00804 1.19219 1.27613 1.06222 0.83823 0.91335 1.24719 1.00968 0.97562 0.97768 1.69649 1.42703 1.17379 1.28518 0.86209 0.78020 0.77470 0.84615 1.21785 1.21784 1.20835 0.92430 0.93019 0.91260 0.89146 0.91110 0.79424 0.89577 0.87656 0.88980 0.90505 0.90900 0.89673 0.88204 0.88894 0.88060 0.90602 0.89063 0.91921 0.96679 0.95805 0.78287 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.82 37.16 0.33 -1.43 16 2 C -0.10 -1.26 2.41 -90.50 -0.22 -1.48 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.49 5.73 -3.71 -0.02 1.47 16 5 N -0.59 -7.70 2.97 -174.28 -0.52 -8.22 16 6 C 0.60 8.48 7.58 -12.82 -0.10 8.39 16 7 O -0.55 -8.95 14.99 5.20 0.08 -8.88 16 8 C -0.08 -1.05 6.48 -82.35 -0.53 -1.58 16 9 C 0.03 0.38 9.53 -17.36 -0.17 0.21 16 10 N -0.49 -6.58 11.20 -10.35 -0.12 -6.70 16 11 C 0.23 2.56 7.64 -155.32 -1.19 1.37 16 12 N -0.42 -4.91 3.15 -109.76 -0.35 -5.25 16 13 C 0.10 0.88 6.45 -3.94 -0.03 0.85 16 14 C -0.14 -0.74 5.95 -26.51 -0.16 -0.90 16 15 C -0.13 -0.64 5.96 -26.45 -0.16 -0.80 16 16 C -0.04 -0.25 6.33 -27.48 -0.17 -0.42 16 17 C 0.08 1.02 5.16 -3.71 -0.02 1.00 16 18 C -0.12 -1.85 5.25 -26.61 -0.14 -1.99 16 19 C -0.09 -1.38 1.73 -90.58 -0.16 -1.54 16 20 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 21 C 0.16 3.08 5.41 -4.05 -0.02 3.05 16 22 N -0.73 -18.12 5.32 -59.91 -0.32 -18.44 16 23 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 26 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 27 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.90 6.30 -51.93 -0.33 0.57 16 34 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.19 2.06 6.02 -52.49 -0.32 1.75 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 1.06 7.13 -51.92 -0.37 0.69 16 39 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 41 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 42 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 1.21 3.97 -51.93 -0.21 1.01 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.09 1.55 7.15 -51.93 -0.37 1.18 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 51 H 0.38 9.86 6.84 -40.82 -0.28 9.58 16 52 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -33.95 396.25 -10.98 -44.93 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -8.44 Total: 7.49 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.99 Total: -1.07 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -0.57 Total: -65.86 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.95 -10.98 -44.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184990334.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.566 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds