Wall clock time and date at job start Wed Apr 1 2020 04:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.52279 * 2 1 4 4 C 1.53198 * 109.49586 * 120.07303 * 2 1 3 5 5 N 1.46919 * 108.77745 * 174.58690 * 4 2 1 6 6 C 1.34772 * 120.63243 * 126.36639 * 5 4 2 7 7 O 1.21689 * 119.99949 * 353.03566 * 6 5 4 8 8 C 1.46761 * 120.00377 * 173.02724 * 6 5 4 9 9 C 1.36836 * 126.91181 * 335.47264 * 8 6 5 10 10 N 1.33451 * 107.83577 * 179.81560 * 9 8 6 11 11 C 1.30559 * 109.68571 * 0.42359 * 10 9 8 12 12 N 1.34873 * 108.98435 * 359.76868 * 11 10 9 13 13 C 1.46446 * 124.98801 * 179.90429 * 12 11 10 14 14 C 1.53261 * 108.82343 * 342.94508 * 13 12 11 15 15 C 1.53160 * 109.44178 * 50.22486 * 14 13 12 16 16 C 1.51108 * 127.09358 * 179.77585 * 11 10 9 17 17 C 1.46927 * 118.73980 * 306.39554 * 5 4 2 18 18 C 1.53194 * 108.77493 * 53.60385 * 17 5 4 19 19 C 1.53036 * 109.49722 * 239.91230 * 2 1 3 20 20 H 1.08996 * 109.46511 * 298.68936 * 19 2 1 21 21 C 1.52999 * 109.46208 * 58.66534 * 19 2 1 22 22 N 1.46491 * 109.47026 * 184.99725 * 21 19 2 23 23 C 1.36941 * 119.99936 * 180.27858 * 22 21 19 24 24 H 1.07999 * 120.00007 * 359.71831 * 23 22 21 25 25 C 1.38812 * 120.00130 * 179.72662 * 23 22 21 26 26 N 1.31619 * 119.99983 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99834 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47193 * 89.99960 * 27 25 23 29 29 H 1.48497 * 109.47250 * 209.99624 * 27 25 23 30 30 H 1.48497 * 109.47456 * 329.99799 * 27 25 23 31 31 H 1.09000 * 109.47198 * 180.08355 * 1 2 3 32 32 H 1.09004 * 109.47448 * 300.08870 * 1 2 3 33 33 H 1.09005 * 109.46620 * 60.08882 * 1 2 3 34 34 H 1.09002 * 109.58742 * 294.37568 * 4 2 1 35 35 H 1.08997 * 109.58522 * 54.65683 * 4 2 1 36 36 H 1.08001 * 126.07845 * 359.96435 * 9 8 6 37 37 H 1.09003 * 109.57878 * 102.74938 * 13 12 11 38 38 H 1.09007 * 109.57451 * 223.14232 * 13 12 11 39 39 H 1.09001 * 109.47474 * 170.21521 * 14 13 12 40 40 H 1.09001 * 109.47112 * 290.23358 * 14 13 12 41 41 H 1.08997 * 109.50986 * 50.58925 * 15 14 13 42 42 H 1.08997 * 109.51459 * 170.74823 * 15 14 13 43 43 H 1.09004 * 109.70937 * 44.27021 * 16 11 10 44 44 H 1.09001 * 109.71268 * 283.64969 * 16 11 10 45 45 H 1.08999 * 109.58915 * 173.38800 * 17 5 4 46 46 H 1.08994 * 109.58555 * 293.82233 * 17 5 4 47 47 H 1.09002 * 109.49977 * 185.41155 * 18 17 5 48 48 H 1.09000 * 109.49681 * 65.31934 * 18 17 5 49 49 H 1.09001 * 109.46944 * 64.99984 * 21 19 2 50 50 H 1.09001 * 109.46883 * 305.00082 * 21 19 2 51 51 H 0.97000 * 120.00387 * 359.97438 * 22 21 19 52 52 H 0.97001 * 119.99847 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 3.5046 -0.8290 1.1698 6 6 4.2811 -0.3854 2.1781 7 8 3.7830 0.2214 3.1080 8 6 5.7273 -0.6340 2.1547 9 6 6.3775 -1.6405 1.4939 10 7 7.6843 -1.5061 1.7287 11 6 7.8879 -0.4775 2.5066 12 7 6.7015 0.0943 2.7974 13 6 6.5236 1.2737 3.6470 14 6 7.7971 1.4847 4.4732 15 6 9.0165 1.4541 3.5470 16 6 9.2159 0.0269 3.0217 17 6 4.1053 -1.4267 -0.0304 18 6 3.5709 -0.6951 -1.2658 19 6 2.0408 -0.7232 -1.2482 20 1 1.6970 -1.7574 -1.2350 21 6 1.5038 -0.0235 -2.4984 22 7 1.8932 -0.7835 -3.6886 23 6 1.5272 -0.3429 -4.9325 24 1 0.9474 0.5625 -5.0356 25 6 1.9010 -1.0599 -6.0607 26 7 2.6078 -2.1631 -5.9350 27 14 1.4010 -0.4592 -7.7573 28 1 2.4496 0.4472 -8.2904 29 1 1.2425 -1.6219 -8.6673 30 1 0.1135 0.2747 -7.6630 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5152 0.8892 33 1 -0.3633 0.5125 -0.8908 34 1 1.7637 -0.1577 2.1390 35 1 1.6033 -1.7205 1.2996 36 1 5.9155 -2.4059 0.8880 37 1 6.3435 2.1494 3.0233 38 1 5.6763 1.1182 4.3150 39 1 7.7476 2.4499 4.9772 40 1 7.8843 0.6911 5.2153 41 1 8.8539 2.1313 2.7086 42 1 9.9022 1.7652 4.1009 43 1 9.9462 0.0318 2.2125 44 1 9.5655 -0.6166 3.8291 45 1 5.1896 -1.3245 0.0141 46 1 3.8375 -2.4817 -0.0863 47 1 3.9335 -1.1899 -2.1668 48 1 3.9160 0.3387 -1.2539 49 1 1.9186 0.9827 -2.5580 50 1 0.4167 0.0343 -2.4437 51 1 2.4142 -1.5965 -3.5961 52 1 2.8694 -2.6640 -6.7234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184990334.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:20 Heat of formation + Delta-G solvation = 12.505396 kcal Electronic energy + Delta-G solvation = -31291.342703 eV Core-core repulsion = 27290.756859 eV Total energy + Delta-G solvation = -4000.585843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.61478 -41.21257 -39.17621 -37.69321 -36.58973 -35.11057 -34.25079 -33.49620 -32.04937 -31.11892 -30.17507 -28.45117 -27.55093 -25.79519 -25.32156 -24.44334 -23.39586 -22.79472 -22.67446 -21.38000 -20.61398 -19.81143 -19.14217 -18.28857 -17.56258 -17.26288 -16.96447 -16.62564 -16.18007 -15.80216 -15.70838 -15.51238 -15.35096 -15.19109 -15.16230 -15.05411 -14.75036 -14.45062 -14.24435 -14.07598 -13.96973 -13.57313 -13.12624 -12.99586 -12.94814 -12.87629 -12.75314 -12.65190 -12.28546 -12.17251 -12.06271 -12.00516 -11.95900 -11.89136 -11.65361 -11.49863 -11.30852 -11.20043 -10.97959 -10.88100 -10.72123 -9.82825 -9.44732 -8.95539 -7.93814 -5.21379 0.20435 1.29789 1.47378 1.48492 1.56925 1.68811 2.03647 2.12794 2.56626 3.18246 3.32776 3.39526 3.53488 3.66422 3.70259 3.73898 3.75247 3.84793 3.95749 4.08130 4.20942 4.23859 4.27087 4.27941 4.37319 4.43569 4.44896 4.50673 4.60543 4.66224 4.73079 4.77323 4.78941 4.82995 4.86139 4.91376 4.97448 5.04945 5.09416 5.10611 5.11657 5.21267 5.24345 5.28137 5.34627 5.40228 5.46675 5.51465 5.58373 6.00791 6.18934 6.29180 6.78126 6.94889 7.35802 8.12436 8.36520 9.29529 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.002494 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.436150 B =11222.225042 C =12419.003362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.062 0.938 4 C 0.123 3.877 5 N -0.590 5.590 6 C 0.595 3.405 7 O -0.578 6.578 8 C -0.104 4.104 9 C 0.027 3.973 10 N -0.522 5.522 11 C 0.230 3.770 12 N -0.426 5.426 13 C 0.093 3.907 14 C -0.128 4.128 15 C -0.122 4.122 16 C -0.038 4.038 17 C 0.093 3.907 18 C -0.117 4.117 19 C -0.079 4.079 20 H 0.074 0.926 21 C 0.157 3.843 22 N -0.741 5.741 23 C -0.244 4.244 24 H 0.071 0.929 25 C -0.073 4.073 26 N -0.966 5.966 27 Si 0.970 3.030 28 H -0.289 1.289 29 H -0.294 1.294 30 H -0.271 1.271 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.200 0.800 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.050 0.950 49 H 0.007 0.993 50 H 0.029 0.971 51 H 0.376 0.624 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.736 6.053 24.965 27.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.080 0.920 4 C 0.002 3.998 5 N -0.321 5.321 6 C 0.384 3.616 7 O -0.459 6.459 8 C -0.221 4.221 9 C -0.127 4.127 10 N -0.241 5.241 11 C -0.032 4.032 12 N -0.107 5.107 13 C -0.028 4.028 14 C -0.165 4.165 15 C -0.159 4.159 16 C -0.076 4.076 17 C -0.029 4.029 18 C -0.156 4.156 19 C -0.097 4.097 20 H 0.093 0.907 21 C 0.031 3.969 22 N -0.384 5.384 23 C -0.376 4.376 24 H 0.089 0.911 25 C -0.266 4.266 26 N -0.617 5.617 27 Si 0.799 3.201 28 H -0.216 1.216 29 H -0.221 1.221 30 H -0.196 1.196 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.217 0.783 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.025 0.975 50 H 0.047 0.953 51 H 0.209 0.791 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.918 6.152 25.144 28.094 hybrid contribution -1.003 0.302 -1.254 1.634 sum 9.915 6.454 23.890 26.658 Atomic orbital electron populations 1.21799 0.93067 1.02830 1.02390 1.21347 0.97071 0.99022 0.93172 0.91961 1.21781 0.77453 1.01949 0.98637 1.47811 1.07245 1.59807 1.17213 1.16917 0.84380 0.78165 0.82100 1.90743 1.75566 1.43185 1.36433 1.20587 0.90706 1.01753 1.09039 1.23313 0.89403 0.99315 1.00653 1.70000 1.17553 1.18691 1.17832 1.24360 0.89841 0.91796 0.97236 1.45381 1.05871 1.23584 1.35822 1.22360 1.02045 0.84869 0.93530 1.21976 0.91375 1.05381 0.97772 1.21730 0.99594 0.94806 0.99820 1.20580 0.87476 0.97262 1.02303 1.22499 0.99902 0.98027 0.82489 1.21800 0.95712 1.00457 0.97613 1.21236 0.94901 0.99977 0.93623 0.90735 1.20878 0.96849 0.93425 0.85774 1.42550 1.65349 1.29037 1.01511 1.19590 1.26814 1.06011 0.85215 0.91113 1.25501 1.01680 0.98041 1.01337 1.69795 1.44186 1.18606 1.29116 0.85197 0.77997 0.76794 0.80126 1.21581 1.22067 1.19623 0.91712 0.91105 0.92519 0.89235 0.89357 0.78344 0.89675 0.89190 0.86545 0.90282 0.91468 0.86659 0.87467 0.87229 0.87568 0.88784 0.91331 0.93124 0.97531 0.95345 0.79145 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.82 71.98 0.63 -2.58 16 2 C -0.09 -2.19 2.41 -10.71 -0.03 -2.21 16 3 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.12 2.89 5.73 86.37 0.49 3.39 16 5 N -0.59 -15.01 2.97 -823.53 -2.45 -17.46 16 6 C 0.60 16.91 7.58 86.47 0.66 17.57 16 7 O -0.58 -18.74 14.99 -4.31 -0.06 -18.81 16 8 C -0.10 -2.77 6.48 40.14 0.26 -2.51 16 9 C 0.03 0.69 9.53 84.12 0.80 1.49 16 10 N -0.52 -13.86 11.20 -186.67 -2.09 -15.95 16 11 C 0.23 4.99 7.64 138.29 1.06 6.04 16 12 N -0.43 -9.77 3.15 -501.16 -1.58 -11.35 16 13 C 0.09 1.59 6.45 86.48 0.56 2.15 16 14 C -0.13 -1.10 5.95 30.74 0.18 -0.92 16 15 C -0.12 -0.88 5.96 30.78 0.18 -0.70 16 16 C -0.04 -0.44 6.33 30.11 0.19 -0.25 16 17 C 0.09 2.25 5.16 86.36 0.45 2.70 16 18 C -0.12 -3.56 5.25 30.67 0.16 -3.40 16 19 C -0.08 -2.41 1.73 -10.77 -0.02 -2.42 16 20 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 21 C 0.16 6.20 5.41 86.38 0.47 6.67 16 22 N -0.74 -37.24 5.32 -343.47 -1.83 -39.07 16 23 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 24 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 25 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 26 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 27 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 28 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 29 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 30 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.42 6.30 -2.38 -0.02 1.40 16 34 H 0.09 2.19 7.00 -2.39 -0.02 2.17 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.20 4.32 6.02 -2.91 -0.02 4.30 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.82 7.13 -2.38 -0.02 1.80 16 39 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 0.68 8.12 -2.39 -0.02 0.67 16 41 H 0.07 0.59 8.12 -2.39 -0.02 0.58 16 42 H 0.12 0.21 8.14 -2.39 -0.02 0.20 16 43 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.11 2.54 3.97 -2.39 -0.01 2.53 16 46 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.07 2.41 7.15 -2.39 -0.02 2.39 16 48 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.03 1.12 6.14 -2.39 -0.01 1.11 16 51 H 0.38 19.78 6.84 -92.71 -0.63 19.15 16 52 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -73.76 396.25 1.95 -71.81 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.29 Total: 32.49 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 7.35 Total: 8.43 kcal Atomic # 7 Polarization: -134.59 SS G_CDS: -7.66 Total: -142.25 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.06 Total: -18.81 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -73.76 1.95 -71.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184990334.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.316 kcal (2) G-P(sol) polarization free energy of solvation -73.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds