Wall clock time and date at job start Wed Apr 1 2020 04:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.49657 * 2 1 4 4 C 1.53191 * 109.49927 * 120.09214 * 2 1 3 5 5 N 1.46925 * 108.77784 * 174.58555 * 4 2 1 6 6 C 1.34771 * 120.62902 * 126.37074 * 5 4 2 7 7 O 1.21610 * 119.99900 * 175.72963 * 6 5 4 8 8 C 1.47426 * 120.00376 * 355.72884 * 6 5 4 9 9 C 1.41480 * 126.48463 * 49.63318 * 8 6 5 10 10 N 1.30606 * 108.06833 * 179.80934 * 9 8 6 11 11 N 1.39616 * 108.87698 * 0.41925 * 10 9 8 12 12 C 1.34611 * 108.33845 * 359.76443 * 11 10 9 13 13 C 1.50805 * 124.57471 * 179.97438 * 12 11 10 14 14 C 1.53441 * 108.19864 * 344.32654 * 13 12 11 15 15 C 1.53159 * 109.11978 * 48.34854 * 14 13 12 16 16 C 1.46690 * 127.23545 * 179.79868 * 11 10 9 17 17 C 1.46927 * 118.73913 * 306.39591 * 5 4 2 18 18 C 1.53192 * 108.77723 * 53.60379 * 17 5 4 19 19 C 1.53036 * 109.49734 * 239.93224 * 2 1 3 20 20 H 1.08999 * 109.46378 * 298.70372 * 19 2 1 21 21 C 1.52995 * 109.46225 * 58.66483 * 19 2 1 22 22 N 1.46501 * 109.47489 * 185.06792 * 21 19 2 23 23 C 1.36941 * 120.00161 * 179.97438 * 22 21 19 24 24 H 1.08001 * 119.99956 * 359.97438 * 23 22 21 25 25 C 1.38809 * 119.99854 * 180.02562 * 23 22 21 26 26 N 1.31614 * 120.00052 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 119.99817 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47499 * 59.99880 * 27 25 23 29 29 H 1.48503 * 109.47312 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47368 * 299.99685 * 27 25 23 31 31 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46937 * 300.06388 * 1 2 3 33 33 H 1.09001 * 109.47335 * 60.06698 * 1 2 3 34 34 H 1.08998 * 109.58964 * 294.37963 * 4 2 1 35 35 H 1.08999 * 109.58372 * 54.65862 * 4 2 1 36 36 H 1.08000 * 125.96362 * 359.97438 * 9 8 6 37 37 H 1.08997 * 109.71468 * 104.00274 * 13 12 11 38 38 H 1.08997 * 109.71386 * 224.60091 * 13 12 11 39 39 H 1.09003 * 109.53099 * 168.24355 * 14 13 12 40 40 H 1.09004 * 109.53245 * 288.45061 * 14 13 12 41 41 H 1.09000 * 109.46105 * 50.78546 * 15 14 13 42 42 H 1.09004 * 109.45959 * 170.73594 * 15 14 13 43 43 H 1.09005 * 109.56766 * 42.74884 * 16 11 10 44 44 H 1.09000 * 109.57186 * 282.36822 * 16 11 10 45 45 H 1.09003 * 109.58563 * 293.81751 * 17 5 4 46 46 H 1.08998 * 109.58720 * 173.39408 * 17 5 4 47 47 H 1.09002 * 109.49519 * 65.31706 * 18 17 5 48 48 H 1.08994 * 109.49782 * 185.37848 * 18 17 5 49 49 H 1.09005 * 109.47260 * 305.06798 * 21 19 2 50 50 H 1.09004 * 109.47551 * 65.06193 * 21 19 2 51 51 H 0.96999 * 120.00045 * 359.97438 * 22 21 19 52 52 H 0.96999 * 120.00225 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7240 1.2494 5 7 3.5046 -0.8294 1.1694 6 6 4.2811 -0.3861 2.1778 7 8 5.4855 -0.5489 2.1346 8 6 3.6706 0.2962 3.3333 9 6 2.5672 -0.1594 4.0927 10 7 2.3304 0.7186 5.0301 11 7 3.2480 1.7642 4.9119 12 6 4.0616 1.4983 3.8730 13 6 5.1895 2.3905 3.4191 14 6 4.9943 3.7721 4.0575 15 6 4.7218 3.5989 5.5546 16 6 3.3426 2.9616 5.7540 17 6 4.1053 -1.4266 -0.0311 18 6 3.5709 -0.6947 -1.2662 19 6 2.0408 -0.7228 -1.2485 20 1 1.6967 -1.7570 -1.2357 21 6 1.5038 -0.0227 -2.4984 22 7 1.8917 -0.7831 -3.6889 23 6 1.5200 -0.3455 -4.9321 24 1 0.9405 0.5600 -5.0350 25 6 1.8872 -1.0664 -6.0601 26 7 2.5931 -2.1702 -5.9348 27 14 1.3808 -0.4691 -7.7560 28 1 1.9471 0.8829 -7.9942 29 1 1.8939 -1.4085 -8.7854 30 1 -0.1006 -0.4066 -7.8369 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8906 34 1 1.7638 -0.1584 2.1389 35 1 1.6033 -1.7209 1.2989 36 1 2.0185 -1.0749 3.9278 37 1 6.1428 1.9693 3.7382 38 1 5.1726 2.4807 2.3330 39 1 5.8958 4.3687 3.9178 40 1 4.1479 4.2739 3.5886 41 1 5.4859 2.9556 5.9909 42 1 4.7455 4.5731 6.0431 43 1 3.2174 2.6829 6.8003 44 1 2.5665 3.6715 5.4678 45 1 3.8376 -2.4818 -0.0873 46 1 5.1896 -1.3245 0.0134 47 1 3.9159 0.3392 -1.2540 48 1 3.9339 -1.1888 -2.1673 49 1 0.4167 0.0362 -2.4431 50 1 1.9194 0.9833 -2.5583 51 1 2.4119 -1.5966 -3.5966 52 1 2.8500 -2.6737 -6.7230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185436539.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:19 Heat of formation + Delta-G solvation = 39.269285 kcal Electronic energy + Delta-G solvation = -31349.345241 eV Core-core repulsion = 27349.919968 eV Total energy + Delta-G solvation = -3999.425274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.98329 -39.89316 -37.83771 -36.94622 -34.88603 -33.27264 -32.99377 -32.02853 -30.80321 -30.45776 -28.77860 -26.80647 -26.48313 -24.74336 -23.98606 -23.23405 -22.40068 -21.64808 -21.26501 -20.03221 -19.50620 -18.74919 -17.55630 -16.98049 -16.39713 -15.88345 -15.73222 -15.13383 -15.03843 -14.79544 -14.70125 -14.46909 -14.35653 -14.12636 -13.83518 -13.82694 -13.49364 -13.11473 -12.98743 -12.71922 -12.53536 -12.39391 -12.26254 -11.92048 -11.77069 -11.71162 -11.57943 -11.50909 -11.48039 -11.01082 -10.96922 -10.82048 -10.78592 -10.38903 -10.19530 -10.13084 -9.91180 -9.79989 -9.63619 -9.49559 -8.83054 -8.77956 -8.44258 -6.86932 -5.73403 -3.01268 1.41869 2.02922 2.08621 2.89770 3.26187 3.45764 3.50128 3.51154 3.90395 4.09036 4.20221 4.21259 4.51822 4.61063 4.70225 4.77965 4.83814 4.87927 4.93497 4.96763 5.11937 5.12897 5.22891 5.27968 5.30678 5.37340 5.44463 5.46953 5.51403 5.59810 5.63190 5.65652 5.69705 5.73902 5.78925 5.94674 6.04146 6.05665 6.13107 6.18562 6.30306 6.32855 6.39262 6.53108 6.56345 6.58031 6.78280 6.87827 6.98274 7.34797 7.50969 7.72260 8.27553 8.46069 9.56905 10.16053 10.50527 11.49550 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.002303 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.113333 B =12157.658597 C =12208.110352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.071 0.929 4 C 0.108 3.892 5 N -0.601 5.601 6 C 0.596 3.404 7 O -0.547 6.547 8 C -0.282 4.282 9 C 0.079 3.921 10 N -0.295 5.295 11 N -0.361 5.361 12 C 0.145 3.855 13 C -0.063 4.063 14 C -0.128 4.128 15 C -0.139 4.139 16 C 0.131 3.869 17 C 0.112 3.888 18 C -0.124 4.124 19 C -0.089 4.089 20 H 0.072 0.928 21 C 0.157 3.843 22 N -0.731 5.731 23 C -0.238 4.238 24 H 0.068 0.932 25 C -0.015 4.015 26 N -0.934 5.934 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.287 1.287 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.190 0.810 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.023 0.977 50 H 0.015 0.985 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 10.238 26.503 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.015 4.015 5 N -0.333 5.333 6 C 0.384 3.616 7 O -0.425 6.425 8 C -0.297 4.297 9 C -0.108 4.108 10 N -0.114 5.114 11 N -0.141 5.141 12 C 0.014 3.986 13 C -0.101 4.101 14 C -0.166 4.166 15 C -0.177 4.177 16 C 0.010 3.990 17 C -0.010 4.010 18 C -0.162 4.162 19 C -0.108 4.108 20 H 0.090 0.910 21 C 0.030 3.970 22 N -0.376 5.376 23 C -0.369 4.369 24 H 0.086 0.914 25 C -0.210 4.210 26 N -0.583 5.583 27 Si 0.737 3.263 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.207 0.793 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.080 0.920 48 H 0.106 0.894 49 H 0.041 0.959 50 H 0.033 0.967 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.681 10.657 27.456 29.499 hybrid contribution 0.150 -0.269 -1.671 1.699 sum 1.830 10.388 25.784 27.859 Atomic orbital electron populations 1.21839 0.94490 1.02214 1.01941 1.21444 0.95945 0.99860 0.94368 0.91046 1.22008 0.79327 1.00935 0.99218 1.47982 1.06927 1.60434 1.17938 1.17285 0.85719 0.77473 0.81127 1.90754 1.14425 1.57761 1.79521 1.19767 1.04840 0.99856 1.05192 1.24070 0.95272 0.98945 0.92540 1.77091 1.13377 0.97571 1.23386 1.48499 1.24108 1.17632 1.23909 1.21234 0.93533 0.95108 0.88734 1.20547 0.94992 0.92484 1.02116 1.21726 1.03468 0.96794 0.94581 1.21996 0.95573 1.02188 0.97927 1.21908 0.99059 0.83002 0.94997 1.21719 0.99293 0.96708 0.83233 1.21923 0.95709 1.01127 0.97419 1.21337 0.94951 1.00103 0.94360 0.90968 1.20748 0.96538 0.94024 0.85735 1.42374 1.65413 1.28968 1.00830 1.19174 1.27663 1.06155 0.83901 0.91396 1.24719 1.00994 0.97554 0.97768 1.69639 1.42756 1.17249 1.28643 0.86282 0.78010 0.77635 0.84348 1.21352 1.21717 1.21344 0.92427 0.93178 0.91344 0.89488 0.91259 0.79325 0.88325 0.88561 0.89771 0.90936 0.90383 0.88728 0.88664 0.89459 0.91434 0.89190 0.91979 0.89365 0.95914 0.96710 0.78273 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.82 37.16 0.33 -1.37 16 2 C -0.10 -1.22 2.41 -90.50 -0.22 -1.44 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.11 1.22 5.18 -3.71 -0.02 1.20 16 5 N -0.60 -7.97 2.97 -174.04 -0.52 -8.49 16 6 C 0.60 8.57 7.39 -12.52 -0.09 8.48 16 7 O -0.55 -9.49 16.54 5.27 0.09 -9.40 16 8 C -0.28 -3.50 5.12 -105.21 -0.54 -4.04 16 9 C 0.08 0.87 9.66 -16.84 -0.16 0.70 16 10 N -0.30 -3.41 12.54 30.93 0.39 -3.02 16 11 N -0.36 -3.60 4.01 -56.39 -0.23 -3.82 16 12 C 0.14 1.58 6.66 -81.61 -0.54 1.04 16 13 C -0.06 -0.54 6.11 -27.60 -0.17 -0.71 16 14 C -0.13 -0.69 5.98 -26.42 -0.16 -0.85 16 15 C -0.14 -0.59 5.93 -26.53 -0.16 -0.75 16 16 C 0.13 0.78 7.27 -3.82 -0.03 0.75 16 17 C 0.11 1.59 6.42 -3.71 -0.02 1.57 16 18 C -0.12 -1.95 5.25 -26.61 -0.14 -2.09 16 19 C -0.09 -1.39 1.73 -90.58 -0.16 -1.54 16 20 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 21 C 0.16 3.10 5.41 -4.04 -0.02 3.08 16 22 N -0.73 -18.32 5.32 -59.91 -0.32 -18.64 16 23 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 26 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 27 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 34 H 0.09 0.90 4.53 -51.93 -0.24 0.66 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.19 1.60 7.61 -52.49 -0.40 1.20 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 41 H 0.08 0.37 8.12 -51.93 -0.42 -0.05 16 42 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.36 7.03 -51.93 -0.36 0.99 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.09 1.59 7.15 -51.93 -0.37 1.22 16 49 H 0.02 0.46 6.14 -51.93 -0.32 0.14 16 50 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.38 10.04 6.85 -40.82 -0.28 9.76 16 52 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -34.44 402.12 -9.78 -44.22 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -8.60 Total: 6.41 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.35 Total: -3.29 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.05 Total: -61.50 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.44 -9.78 -44.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185436539.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.485 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds