Wall clock time and date at job start Wed Apr 1 2020 04:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.49657 * 2 1 4 4 C 1.53191 * 109.49927 * 120.09214 * 2 1 3 5 5 N 1.46925 * 108.77784 * 174.58555 * 4 2 1 6 6 C 1.34771 * 120.62902 * 126.37074 * 5 4 2 7 7 O 1.21610 * 119.99900 * 175.72963 * 6 5 4 8 8 C 1.47426 * 120.00376 * 355.72884 * 6 5 4 9 9 C 1.41480 * 126.48463 * 49.63318 * 8 6 5 10 10 N 1.30606 * 108.06833 * 179.80934 * 9 8 6 11 11 N 1.39616 * 108.87698 * 0.41925 * 10 9 8 12 12 C 1.34611 * 108.33845 * 359.76443 * 11 10 9 13 13 C 1.50805 * 124.57471 * 179.97438 * 12 11 10 14 14 C 1.53441 * 108.19864 * 344.32654 * 13 12 11 15 15 C 1.53159 * 109.11978 * 48.34854 * 14 13 12 16 16 C 1.46690 * 127.23545 * 179.79868 * 11 10 9 17 17 C 1.46927 * 118.73913 * 306.39591 * 5 4 2 18 18 C 1.53192 * 108.77723 * 53.60379 * 17 5 4 19 19 C 1.53036 * 109.49734 * 239.93224 * 2 1 3 20 20 H 1.08999 * 109.46378 * 298.70372 * 19 2 1 21 21 C 1.52995 * 109.46225 * 58.66483 * 19 2 1 22 22 N 1.46501 * 109.47489 * 185.06792 * 21 19 2 23 23 C 1.36941 * 120.00161 * 179.97438 * 22 21 19 24 24 H 1.08001 * 119.99956 * 359.97438 * 23 22 21 25 25 C 1.38809 * 119.99854 * 180.02562 * 23 22 21 26 26 N 1.31614 * 120.00052 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 119.99817 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47499 * 59.99880 * 27 25 23 29 29 H 1.48503 * 109.47312 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47368 * 299.99685 * 27 25 23 31 31 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46937 * 300.06388 * 1 2 3 33 33 H 1.09001 * 109.47335 * 60.06698 * 1 2 3 34 34 H 1.08998 * 109.58964 * 294.37963 * 4 2 1 35 35 H 1.08999 * 109.58372 * 54.65862 * 4 2 1 36 36 H 1.08000 * 125.96362 * 359.97438 * 9 8 6 37 37 H 1.08997 * 109.71468 * 104.00274 * 13 12 11 38 38 H 1.08997 * 109.71386 * 224.60091 * 13 12 11 39 39 H 1.09003 * 109.53099 * 168.24355 * 14 13 12 40 40 H 1.09004 * 109.53245 * 288.45061 * 14 13 12 41 41 H 1.09000 * 109.46105 * 50.78546 * 15 14 13 42 42 H 1.09004 * 109.45959 * 170.73594 * 15 14 13 43 43 H 1.09005 * 109.56766 * 42.74884 * 16 11 10 44 44 H 1.09000 * 109.57186 * 282.36822 * 16 11 10 45 45 H 1.09003 * 109.58563 * 293.81751 * 17 5 4 46 46 H 1.08998 * 109.58720 * 173.39408 * 17 5 4 47 47 H 1.09002 * 109.49519 * 65.31706 * 18 17 5 48 48 H 1.08994 * 109.49782 * 185.37848 * 18 17 5 49 49 H 1.09005 * 109.47260 * 305.06798 * 21 19 2 50 50 H 1.09004 * 109.47551 * 65.06193 * 21 19 2 51 51 H 0.96999 * 120.00045 * 359.97438 * 22 21 19 52 52 H 0.96999 * 120.00225 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7240 1.2494 5 7 3.5046 -0.8294 1.1694 6 6 4.2811 -0.3861 2.1778 7 8 5.4855 -0.5489 2.1346 8 6 3.6706 0.2962 3.3333 9 6 2.5672 -0.1594 4.0927 10 7 2.3304 0.7186 5.0301 11 7 3.2480 1.7642 4.9119 12 6 4.0616 1.4983 3.8730 13 6 5.1895 2.3905 3.4191 14 6 4.9943 3.7721 4.0575 15 6 4.7218 3.5989 5.5546 16 6 3.3426 2.9616 5.7540 17 6 4.1053 -1.4266 -0.0311 18 6 3.5709 -0.6947 -1.2662 19 6 2.0408 -0.7228 -1.2485 20 1 1.6967 -1.7570 -1.2357 21 6 1.5038 -0.0227 -2.4984 22 7 1.8917 -0.7831 -3.6889 23 6 1.5200 -0.3455 -4.9321 24 1 0.9405 0.5600 -5.0350 25 6 1.8872 -1.0664 -6.0601 26 7 2.5931 -2.1702 -5.9348 27 14 1.3808 -0.4691 -7.7560 28 1 1.9471 0.8829 -7.9942 29 1 1.8939 -1.4085 -8.7854 30 1 -0.1006 -0.4066 -7.8369 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8906 34 1 1.7638 -0.1584 2.1389 35 1 1.6033 -1.7209 1.2989 36 1 2.0185 -1.0749 3.9278 37 1 6.1428 1.9693 3.7382 38 1 5.1726 2.4807 2.3330 39 1 5.8958 4.3687 3.9178 40 1 4.1479 4.2739 3.5886 41 1 5.4859 2.9556 5.9909 42 1 4.7455 4.5731 6.0431 43 1 3.2174 2.6829 6.8003 44 1 2.5665 3.6715 5.4678 45 1 3.8376 -2.4818 -0.0873 46 1 5.1896 -1.3245 0.0134 47 1 3.9159 0.3392 -1.2540 48 1 3.9339 -1.1888 -2.1673 49 1 0.4167 0.0362 -2.4431 50 1 1.9194 0.9833 -2.5583 51 1 2.4119 -1.5966 -3.5966 52 1 2.8500 -2.6737 -6.7230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185436539.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:18 Heat of formation + Delta-G solvation = 17.969520 kcal Electronic energy + Delta-G solvation = -31350.268869 eV Core-core repulsion = 27349.919968 eV Total energy + Delta-G solvation = -4000.348901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.78117 -41.00397 -39.08124 -37.51935 -36.52861 -34.76300 -33.82734 -33.27089 -32.20939 -31.45238 -29.68770 -28.23382 -27.55318 -25.62804 -25.30474 -24.45245 -23.29908 -22.65337 -22.56312 -21.12315 -20.44665 -19.61457 -19.14111 -18.37877 -17.34053 -16.76851 -16.68978 -16.57805 -16.12075 -15.75550 -15.62414 -15.48178 -15.29707 -15.21116 -15.06165 -14.94764 -14.70146 -14.32688 -14.28169 -13.98777 -13.72153 -13.44061 -13.12547 -13.04752 -12.93405 -12.80851 -12.73349 -12.64913 -12.36196 -12.21787 -12.01290 -11.97717 -11.94136 -11.88343 -11.67495 -11.61347 -11.35503 -11.26624 -10.87087 -10.86405 -10.31597 -9.74251 -9.48834 -8.95121 -7.93073 -5.20951 0.58665 1.18978 1.36474 1.47324 1.50228 1.56363 1.85166 2.22734 2.57344 3.33771 3.40062 3.45107 3.67256 3.69934 3.71941 3.76139 3.82887 3.91693 4.01036 4.11654 4.25820 4.27765 4.31760 4.33115 4.38741 4.44435 4.56011 4.61776 4.63161 4.68778 4.69900 4.77486 4.79196 4.84383 4.90251 4.93869 4.96243 5.00817 5.06192 5.12744 5.16174 5.19668 5.23305 5.29196 5.38465 5.44808 5.49292 5.58562 5.62094 5.88453 6.29494 6.42992 6.55469 7.17106 7.35825 8.13377 8.36615 9.30267 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.002303 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.113333 B =12157.658597 C =12208.110352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.064 0.936 4 C 0.112 3.888 5 N -0.599 5.599 6 C 0.597 3.403 7 O -0.585 6.585 8 C -0.309 4.309 9 C 0.081 3.919 10 N -0.313 5.313 11 N -0.357 5.357 12 C 0.143 3.857 13 C -0.065 4.065 14 C -0.123 4.123 15 C -0.131 4.131 16 C 0.119 3.881 17 C 0.120 3.880 18 C -0.114 4.114 19 C -0.078 4.078 20 H 0.070 0.930 21 C 0.157 3.843 22 N -0.743 5.743 23 C -0.244 4.244 24 H 0.073 0.927 25 C -0.075 4.075 26 N -0.969 5.969 27 Si 0.972 3.028 28 H -0.280 1.280 29 H -0.295 1.295 30 H -0.277 1.277 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.211 0.789 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.030 0.970 50 H 0.008 0.992 51 H 0.374 0.626 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 11.845 28.424 30.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.010 4.010 5 N -0.330 5.330 6 C 0.386 3.614 7 O -0.466 6.466 8 C -0.324 4.324 9 C -0.106 4.106 10 N -0.133 5.133 11 N -0.137 5.137 12 C 0.010 3.990 13 C -0.104 4.104 14 C -0.160 4.160 15 C -0.169 4.169 16 C 0.000 4.000 17 C -0.002 4.002 18 C -0.153 4.153 19 C -0.097 4.097 20 H 0.089 0.911 21 C 0.031 3.969 22 N -0.386 5.386 23 C -0.376 4.376 24 H 0.090 0.910 25 C -0.268 4.268 26 N -0.619 5.619 27 Si 0.801 3.199 28 H -0.206 1.206 29 H -0.222 1.222 30 H -0.203 1.203 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.227 0.773 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.144 0.856 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.048 0.952 50 H 0.026 0.974 51 H 0.207 0.793 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.293 12.309 29.422 31.894 hybrid contribution 0.574 -0.695 -2.202 2.379 sum 0.867 11.614 27.220 29.607 Atomic orbital electron populations 1.21796 0.93077 1.02792 1.02377 1.21362 0.96989 0.99131 0.93254 0.91719 1.22129 0.77873 1.02092 0.98910 1.48016 1.07823 1.59932 1.17222 1.17588 0.85253 0.76896 0.81624 1.90725 1.16124 1.59259 1.80465 1.19734 1.06253 1.00941 1.05453 1.24374 0.94784 0.99507 0.91892 1.77045 1.14234 0.98230 1.23750 1.48862 1.23148 1.18034 1.23680 1.21554 0.93762 0.94966 0.88669 1.20620 0.94047 0.94209 1.01545 1.21730 1.04395 0.94716 0.95171 1.22015 0.94286 1.03514 0.97112 1.22341 1.00613 0.81972 0.95082 1.21535 0.98640 0.97064 0.82998 1.21767 0.96009 1.00356 0.97148 1.21227 0.94479 0.99899 0.94047 0.91125 1.20895 0.96868 0.93430 0.85696 1.42580 1.65264 1.29078 1.01670 1.19577 1.26823 1.05990 0.85239 0.90952 1.25535 1.01716 0.98023 1.01495 1.69799 1.44356 1.18563 1.29221 0.85239 0.77948 0.77083 0.79662 1.20598 1.22158 1.20326 0.91789 0.90828 0.92804 0.87847 0.89369 0.77267 0.88815 0.89936 0.88085 0.90778 0.90854 0.85592 0.87526 0.88018 0.90371 0.90390 0.92951 0.92069 0.95203 0.97413 0.79316 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.82 71.98 0.63 -2.34 16 2 C -0.09 -2.10 2.41 -10.72 -0.03 -2.12 16 3 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.11 2.31 5.18 86.36 0.45 2.76 16 5 N -0.60 -15.61 2.97 -822.79 -2.45 -18.06 16 6 C 0.60 17.19 7.39 86.66 0.64 17.83 16 7 O -0.58 -20.89 16.54 -4.06 -0.07 -20.95 16 8 C -0.31 -7.44 5.12 -20.25 -0.10 -7.55 16 9 C 0.08 1.65 9.66 85.67 0.83 2.48 16 10 N -0.31 -6.67 12.54 -56.06 -0.70 -7.37 16 11 N -0.36 -6.49 4.01 -332.32 -1.33 -7.82 16 12 C 0.14 3.00 6.66 41.98 0.28 3.28 16 13 C -0.07 -1.09 6.11 30.03 0.18 -0.91 16 14 C -0.12 -1.07 5.98 30.80 0.18 -0.89 16 15 C -0.13 -0.75 5.93 30.72 0.18 -0.56 16 16 C 0.12 1.11 7.27 86.42 0.63 1.73 16 17 C 0.12 3.46 6.42 86.36 0.55 4.02 16 18 C -0.11 -3.72 5.25 30.67 0.16 -3.56 16 19 C -0.08 -2.42 1.73 -10.77 -0.02 -2.44 16 20 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 21 C 0.16 6.24 5.41 86.38 0.47 6.71 16 22 N -0.74 -37.88 5.32 -343.45 -1.83 -39.71 16 23 C -0.24 -13.79 9.99 84.03 0.84 -12.95 16 24 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 25 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 26 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 27 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 28 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 29 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 30 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.29 6.29 -2.39 -0.02 1.27 16 34 H 0.10 1.88 4.53 -2.39 -0.01 1.87 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.21 3.06 7.61 -2.91 -0.02 3.03 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 41 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 42 H 0.13 -0.01 8.14 -2.38 -0.02 -0.03 16 43 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 46 H 0.08 2.46 7.03 -2.39 -0.02 2.44 16 47 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 48 H 0.06 2.33 7.15 -2.39 -0.02 2.31 16 49 H 0.03 1.17 6.14 -2.38 -0.01 1.16 16 50 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 51 H 0.37 20.21 6.85 -92.71 -0.63 19.57 16 52 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -75.47 402.12 2.57 -72.90 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.29 Total: 30.27 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 6.35 Total: 1.58 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -6.02 Total: -132.37 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.07 Total: -20.95 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -75.47 2.57 -72.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185436539.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.867 kcal (2) G-P(sol) polarization free energy of solvation -75.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds