Wall clock time and date at job start Wed Apr 1 2020 04:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08991 * 109.52530 * 2 1 4 4 C 1.53199 * 109.49422 * 120.07988 * 2 1 3 5 5 N 1.46929 * 108.77208 * 174.58831 * 4 2 1 6 6 C 1.34770 * 120.63097 * 126.41424 * 5 4 2 7 7 O 1.21606 * 120.00040 * 353.93602 * 6 5 4 8 8 C 1.47426 * 120.00096 * 173.93555 * 6 5 4 9 9 C 1.41291 * 126.41805 * 327.98040 * 8 6 5 10 10 N 1.30447 * 108.02515 * 179.97438 * 9 8 6 11 11 N 1.39932 * 108.89793 * 0.02562 * 10 9 8 12 12 C 1.46498 * 125.75538 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46946 * 304.97220 * 12 11 10 14 14 C 1.52993 * 117.49745 * 243.74992 * 13 12 11 15 15 C 1.52995 * 117.50074 * 175.08718 * 13 12 11 16 16 C 1.34267 * 108.49007 * 359.74642 * 11 10 9 17 17 C 1.46928 * 118.73673 * 306.38755 * 5 4 2 18 18 C 1.53193 * 108.77633 * 53.61409 * 17 5 4 19 19 C 1.53034 * 109.31071 * 305.36335 * 18 17 5 20 20 H 1.09006 * 109.46004 * 301.35551 * 19 18 17 21 21 C 1.52999 * 109.46143 * 181.38828 * 19 18 17 22 22 N 1.46504 * 109.47335 * 64.99477 * 21 19 18 23 23 C 1.36935 * 119.99821 * 180.27592 * 22 21 19 24 24 H 1.07996 * 120.00283 * 359.72876 * 23 22 21 25 25 C 1.38817 * 119.99718 * 179.72308 * 23 22 21 26 26 N 1.31614 * 119.99930 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99745 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47225 * 90.00621 * 27 25 23 29 29 H 1.48502 * 109.46819 * 210.00489 * 27 25 23 30 30 H 1.48499 * 109.47468 * 330.00090 * 27 25 23 31 31 H 1.09005 * 109.47635 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47760 * 300.08279 * 1 2 3 33 33 H 1.09006 * 109.46887 * 60.08176 * 1 2 3 34 34 H 1.08999 * 109.58572 * 54.80172 * 4 2 1 35 35 H 1.08998 * 109.58351 * 294.37416 * 4 2 1 36 36 H 1.07998 * 125.98434 * 0.02562 * 9 8 6 37 37 H 1.09002 * 109.47447 * 64.97072 * 12 11 10 38 38 H 1.08997 * 109.47314 * 184.97460 * 12 11 10 39 39 H 1.09002 * 115.54506 * 29.41633 * 13 12 11 40 40 H 1.09001 * 117.50295 * 359.97438 * 14 13 12 41 41 H 1.08999 * 117.49917 * 145.02147 * 14 13 12 42 42 H 1.08998 * 117.50053 * 214.98139 * 15 13 12 43 43 H 1.09006 * 117.49698 * 359.97438 * 15 13 12 44 44 H 1.08003 * 126.28786 * 180.24534 * 16 11 10 45 45 H 1.09002 * 109.58852 * 293.82117 * 17 5 4 46 46 H 1.09008 * 109.69849 * 173.46997 * 17 5 4 47 47 H 1.08996 * 109.49822 * 185.41180 * 18 17 5 48 48 H 1.08998 * 109.52138 * 65.32908 * 18 17 5 49 49 H 1.09006 * 109.46662 * 304.99922 * 21 19 18 50 50 H 1.08996 * 109.47380 * 185.00021 * 21 19 18 51 51 H 0.96992 * 119.99532 * 0.02562 * 22 21 19 52 52 H 0.97002 * 120.00027 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0272 0.0000 4 6 2.0412 -0.7238 1.2497 5 7 3.5045 -0.8291 1.1697 6 6 4.2810 -0.3864 2.1784 7 8 3.7810 0.2047 3.1162 8 6 5.7364 -0.6187 2.1449 9 6 6.3958 -1.7277 1.5690 10 7 7.6790 -1.5688 1.7419 11 7 7.8988 -0.3687 2.4271 12 6 9.2054 0.1697 2.8132 13 6 9.9642 -0.8738 3.6357 14 6 10.2900 -0.5267 5.0896 15 6 11.4030 -0.5456 4.0389 16 6 6.7105 0.2092 2.6657 17 6 4.1052 -1.4268 -0.0306 18 6 3.5708 -0.6951 -1.2659 19 6 2.0408 -0.7231 -1.2483 20 1 1.6967 -1.7574 -1.2350 21 6 1.5037 -0.0234 -2.4984 22 7 1.8918 -0.7841 -3.6887 23 6 1.5253 -0.3436 -4.9324 24 1 0.9465 0.5623 -5.0355 25 6 1.8980 -1.0614 -6.0606 26 7 2.6031 -2.1656 -5.9349 27 14 1.3987 -0.4600 -7.7572 28 1 2.4486 0.4446 -8.2906 29 1 1.2381 -1.6226 -8.6670 30 1 0.1124 0.2760 -7.6629 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3635 0.5151 0.8892 33 1 -0.3633 0.5126 -0.8908 34 1 1.6051 -1.7216 1.2981 35 1 1.7636 -0.1579 2.1389 36 1 5.9207 -2.5605 1.0719 37 1 9.7774 0.4124 1.9176 38 1 9.0651 1.0708 3.4101 39 1 9.7303 -1.9136 3.4067 40 1 9.9643 0.4453 5.4602 41 1 10.2711 -1.3380 5.8172 42 1 12.1158 -1.3694 4.0757 43 1 11.8093 0.4136 3.7179 44 1 6.5469 1.1481 3.1738 45 1 3.8375 -2.4819 -0.0866 46 1 5.1898 -1.3268 0.0126 47 1 3.9334 -1.1898 -2.1669 48 1 3.9159 0.3388 -1.2545 49 1 1.9195 0.9825 -2.5585 50 1 0.4168 0.0355 -2.4431 51 1 2.4114 -1.5979 -3.5960 52 1 2.8631 -2.6674 -6.7233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185458581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:27 Heat of formation + Delta-G solvation = 78.522274 kcal Electronic energy + Delta-G solvation = -30322.823405 eV Core-core repulsion = 26325.100269 eV Total energy + Delta-G solvation = -3997.723137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.68804 -39.87152 -38.06804 -37.71353 -34.95120 -33.78334 -33.00415 -31.91298 -30.56486 -30.23162 -28.06158 -26.85074 -26.23912 -23.94702 -22.95421 -22.81369 -22.19883 -21.98739 -21.13986 -20.63829 -19.82700 -19.13680 -17.70336 -17.08657 -16.53209 -16.03306 -15.90967 -15.44442 -15.12778 -14.75662 -14.71836 -14.35903 -14.20093 -13.89362 -13.80977 -13.53963 -13.39474 -13.25231 -12.91938 -12.78512 -12.50971 -12.30777 -12.19426 -12.07362 -11.85175 -11.72017 -11.51827 -11.22016 -11.00478 -10.96061 -10.84482 -10.76712 -10.63723 -10.33141 -10.23696 -10.12375 -9.93622 -9.81119 -9.65576 -9.59336 -8.87168 -8.83279 -8.44267 -6.87310 -5.74466 -3.01929 1.39337 2.00902 2.05923 3.00846 3.21787 3.33764 3.44742 3.50066 3.51534 3.85826 4.24823 4.35707 4.42877 4.52086 4.60482 4.61069 4.81541 4.83427 4.93512 4.94800 5.01926 5.10348 5.11465 5.22304 5.27002 5.34726 5.40188 5.41970 5.55720 5.57833 5.59635 5.63147 5.66040 5.76651 5.87225 5.94232 5.99803 6.05618 6.12359 6.19382 6.30427 6.36369 6.40285 6.54806 6.56431 6.59899 6.71415 6.88898 6.99092 7.32468 7.50541 7.72618 8.26794 8.45148 9.56192 10.15258 10.49906 11.48563 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002218 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.830114 B =12618.827979 C =14344.931308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.072 0.928 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.596 3.404 7 O -0.556 6.556 8 C -0.286 4.286 9 C 0.079 3.921 10 N -0.292 5.292 11 N -0.359 5.359 12 C 0.163 3.837 13 C -0.171 4.171 14 C -0.178 4.178 15 C -0.169 4.169 16 C 0.121 3.879 17 C 0.097 3.903 18 C -0.124 4.124 19 C -0.089 4.089 20 H 0.072 0.928 21 C 0.156 3.844 22 N -0.731 5.731 23 C -0.236 4.236 24 H 0.069 0.931 25 C -0.016 4.016 26 N -0.934 5.934 27 Si 0.906 3.094 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.194 0.806 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.184 0.816 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.062 0.938 49 H 0.016 0.984 50 H 0.024 0.976 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.968 3.240 22.808 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.002 4.002 5 N -0.334 5.334 6 C 0.385 3.615 7 O -0.435 6.435 8 C -0.301 4.301 9 C -0.108 4.108 10 N -0.112 5.112 11 N -0.138 5.138 12 C 0.042 3.958 13 C -0.190 4.190 14 C -0.215 4.215 15 C -0.206 4.206 16 C -0.030 4.030 17 C -0.026 4.026 18 C -0.163 4.163 19 C -0.108 4.108 20 H 0.090 0.910 21 C 0.029 3.971 22 N -0.376 5.376 23 C -0.367 4.367 24 H 0.087 0.913 25 C -0.211 4.211 26 N -0.583 5.583 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.211 0.789 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.138 0.862 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.201 0.799 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.081 0.919 49 H 0.033 0.967 50 H 0.042 0.958 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.934 3.199 23.002 27.083 hybrid contribution -0.838 0.330 -1.010 1.354 sum 13.096 3.529 21.992 25.838 Atomic orbital electron populations 1.21832 0.94486 1.02144 1.01988 1.21451 0.95998 0.99956 0.94242 0.90950 1.21690 0.78592 1.00779 0.99181 1.47907 1.06808 1.60818 1.17882 1.17279 0.84824 0.77729 0.81637 1.90740 1.75077 1.42621 1.35044 1.20211 0.94154 1.00353 1.15381 1.24254 0.90401 0.98641 0.97490 1.77171 1.17769 1.00243 1.16000 1.48447 1.05909 1.16598 1.42809 1.21385 0.79679 0.95082 0.99678 1.22558 0.98302 1.00946 0.97169 1.23132 1.03145 1.03360 0.91851 1.22994 0.90976 1.03606 1.03043 1.22880 0.84313 0.98740 0.97045 1.22196 0.98858 0.97264 0.84270 1.21917 0.95966 1.01127 0.97241 1.21338 0.94793 1.00138 0.94489 0.90980 1.20761 0.96647 0.94031 0.85693 1.42376 1.65584 1.28794 1.00819 1.19228 1.27518 1.06136 0.83848 0.91321 1.24720 1.01054 0.97590 0.97761 1.69648 1.42888 1.17309 1.28469 0.86207 0.78021 0.77449 0.84632 1.21815 1.21822 1.20829 0.92524 0.93024 0.91392 0.91526 0.89221 0.78921 0.88751 0.88214 0.86249 0.88456 0.88475 0.88206 0.88327 0.79892 0.91169 0.89090 0.89369 0.91902 0.96653 0.95819 0.78314 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.82 37.15 0.33 -1.48 16 2 C -0.10 -1.30 2.41 -90.50 -0.22 -1.51 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.53 5.73 -3.71 -0.02 1.51 16 5 N -0.60 -7.86 2.97 -174.03 -0.52 -8.38 16 6 C 0.60 8.42 7.61 -12.52 -0.10 8.32 16 7 O -0.56 -9.38 16.46 5.27 0.09 -9.29 16 8 C -0.29 -3.46 5.46 -105.07 -0.57 -4.03 16 9 C 0.08 0.89 9.57 -16.98 -0.16 0.73 16 10 N -0.29 -3.38 12.14 30.86 0.37 -3.01 16 11 N -0.36 -3.44 3.65 -60.80 -0.22 -3.66 16 12 C 0.16 1.01 6.77 -4.04 -0.03 0.98 16 13 C -0.17 -1.09 5.92 -90.62 -0.54 -1.62 16 14 C -0.18 -0.92 10.18 -26.70 -0.27 -1.19 16 15 C -0.17 -0.79 10.25 -26.70 -0.27 -1.06 16 16 C 0.12 1.23 11.38 -16.56 -0.19 1.04 16 17 C 0.10 1.18 5.25 -3.71 -0.02 1.16 16 18 C -0.12 -1.86 5.25 -26.61 -0.14 -2.00 16 19 C -0.09 -1.39 1.73 -90.58 -0.16 -1.54 16 20 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 21 C 0.16 3.09 5.41 -4.04 -0.02 3.07 16 22 N -0.73 -18.17 5.32 -59.91 -0.32 -18.49 16 23 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 26 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 27 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.90 6.29 -51.93 -0.33 0.58 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 36 H 0.19 1.78 6.68 -52.49 -0.35 1.43 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.38 7.80 -51.93 -0.40 -0.03 16 39 H 0.12 1.00 7.90 -51.93 -0.41 0.59 16 40 H 0.10 0.41 8.03 -51.93 -0.42 -0.01 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.03 4.34 -51.92 -0.23 0.81 16 47 H 0.09 1.50 7.15 -51.93 -0.37 1.13 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 51 H 0.38 9.88 6.85 -40.82 -0.28 9.60 16 52 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 411.78 15.07 6.21 6.21 Total: -1.00 -34.01 411.78 -9.83 -43.83 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.51 Total: 7.56 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.63 Total: -4.92 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.04 Total: -60.82 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.01 -9.83 -43.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185458581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.357 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds