Wall clock time and date at job start Wed Apr 1 2020 04:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08991 * 109.52530 * 2 1 4 4 C 1.53199 * 109.49422 * 120.07988 * 2 1 3 5 5 N 1.46929 * 108.77208 * 174.58831 * 4 2 1 6 6 C 1.34770 * 120.63097 * 126.41424 * 5 4 2 7 7 O 1.21606 * 120.00040 * 353.93602 * 6 5 4 8 8 C 1.47426 * 120.00096 * 173.93555 * 6 5 4 9 9 C 1.41291 * 126.41805 * 327.98040 * 8 6 5 10 10 N 1.30447 * 108.02515 * 179.97438 * 9 8 6 11 11 N 1.39932 * 108.89793 * 0.02562 * 10 9 8 12 12 C 1.46498 * 125.75538 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46946 * 304.97220 * 12 11 10 14 14 C 1.52993 * 117.49745 * 243.74992 * 13 12 11 15 15 C 1.52995 * 117.50074 * 175.08718 * 13 12 11 16 16 C 1.34267 * 108.49007 * 359.74642 * 11 10 9 17 17 C 1.46928 * 118.73673 * 306.38755 * 5 4 2 18 18 C 1.53193 * 108.77633 * 53.61409 * 17 5 4 19 19 C 1.53034 * 109.31071 * 305.36335 * 18 17 5 20 20 H 1.09006 * 109.46004 * 301.35551 * 19 18 17 21 21 C 1.52999 * 109.46143 * 181.38828 * 19 18 17 22 22 N 1.46504 * 109.47335 * 64.99477 * 21 19 18 23 23 C 1.36935 * 119.99821 * 180.27592 * 22 21 19 24 24 H 1.07996 * 120.00283 * 359.72876 * 23 22 21 25 25 C 1.38817 * 119.99718 * 179.72308 * 23 22 21 26 26 N 1.31614 * 119.99930 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99745 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47225 * 90.00621 * 27 25 23 29 29 H 1.48502 * 109.46819 * 210.00489 * 27 25 23 30 30 H 1.48499 * 109.47468 * 330.00090 * 27 25 23 31 31 H 1.09005 * 109.47635 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47760 * 300.08279 * 1 2 3 33 33 H 1.09006 * 109.46887 * 60.08176 * 1 2 3 34 34 H 1.08999 * 109.58572 * 54.80172 * 4 2 1 35 35 H 1.08998 * 109.58351 * 294.37416 * 4 2 1 36 36 H 1.07998 * 125.98434 * 0.02562 * 9 8 6 37 37 H 1.09002 * 109.47447 * 64.97072 * 12 11 10 38 38 H 1.08997 * 109.47314 * 184.97460 * 12 11 10 39 39 H 1.09002 * 115.54506 * 29.41633 * 13 12 11 40 40 H 1.09001 * 117.50295 * 359.97438 * 14 13 12 41 41 H 1.08999 * 117.49917 * 145.02147 * 14 13 12 42 42 H 1.08998 * 117.50053 * 214.98139 * 15 13 12 43 43 H 1.09006 * 117.49698 * 359.97438 * 15 13 12 44 44 H 1.08003 * 126.28786 * 180.24534 * 16 11 10 45 45 H 1.09002 * 109.58852 * 293.82117 * 17 5 4 46 46 H 1.09008 * 109.69849 * 173.46997 * 17 5 4 47 47 H 1.08996 * 109.49822 * 185.41180 * 18 17 5 48 48 H 1.08998 * 109.52138 * 65.32908 * 18 17 5 49 49 H 1.09006 * 109.46662 * 304.99922 * 21 19 18 50 50 H 1.08996 * 109.47380 * 185.00021 * 21 19 18 51 51 H 0.96992 * 119.99532 * 0.02562 * 22 21 19 52 52 H 0.97002 * 120.00027 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0272 0.0000 4 6 2.0412 -0.7238 1.2497 5 7 3.5045 -0.8291 1.1697 6 6 4.2810 -0.3864 2.1784 7 8 3.7810 0.2047 3.1162 8 6 5.7364 -0.6187 2.1449 9 6 6.3958 -1.7277 1.5690 10 7 7.6790 -1.5688 1.7419 11 7 7.8988 -0.3687 2.4271 12 6 9.2054 0.1697 2.8132 13 6 9.9642 -0.8738 3.6357 14 6 10.2900 -0.5267 5.0896 15 6 11.4030 -0.5456 4.0389 16 6 6.7105 0.2092 2.6657 17 6 4.1052 -1.4268 -0.0306 18 6 3.5708 -0.6951 -1.2659 19 6 2.0408 -0.7231 -1.2483 20 1 1.6967 -1.7574 -1.2350 21 6 1.5037 -0.0234 -2.4984 22 7 1.8918 -0.7841 -3.6887 23 6 1.5253 -0.3436 -4.9324 24 1 0.9465 0.5623 -5.0355 25 6 1.8980 -1.0614 -6.0606 26 7 2.6031 -2.1656 -5.9349 27 14 1.3987 -0.4600 -7.7572 28 1 2.4486 0.4446 -8.2906 29 1 1.2381 -1.6226 -8.6670 30 1 0.1124 0.2760 -7.6629 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3635 0.5151 0.8892 33 1 -0.3633 0.5126 -0.8908 34 1 1.6051 -1.7216 1.2981 35 1 1.7636 -0.1579 2.1389 36 1 5.9207 -2.5605 1.0719 37 1 9.7774 0.4124 1.9176 38 1 9.0651 1.0708 3.4101 39 1 9.7303 -1.9136 3.4067 40 1 9.9643 0.4453 5.4602 41 1 10.2711 -1.3380 5.8172 42 1 12.1158 -1.3694 4.0757 43 1 11.8093 0.4136 3.7179 44 1 6.5469 1.1481 3.1738 45 1 3.8375 -2.4819 -0.0866 46 1 5.1898 -1.3268 0.0126 47 1 3.9334 -1.1898 -2.1669 48 1 3.9159 0.3388 -1.2545 49 1 1.9195 0.9825 -2.5585 50 1 0.4168 0.0355 -2.4431 51 1 2.4114 -1.5979 -3.5960 52 1 2.8631 -2.6674 -6.7233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185458581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:25 Heat of formation + Delta-G solvation = 58.630588 kcal Electronic energy + Delta-G solvation = -30323.685973 eV Core-core repulsion = 26325.100269 eV Total energy + Delta-G solvation = -3998.585705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.51418 -40.94347 -39.04225 -38.42303 -36.52604 -35.09817 -33.90488 -33.34800 -31.97126 -31.38963 -28.80839 -28.35677 -27.17655 -25.61945 -24.20517 -23.31225 -23.10666 -22.78971 -22.46038 -21.31314 -20.97171 -20.14833 -19.12114 -18.50558 -17.43549 -17.03971 -16.73446 -16.57939 -16.16907 -16.06452 -15.67323 -15.46620 -15.41577 -15.17385 -14.85368 -14.81038 -14.40027 -14.26178 -14.09031 -13.94462 -13.80053 -13.48963 -13.07967 -12.92841 -12.87276 -12.78725 -12.71826 -12.61111 -12.41710 -12.16596 -12.04268 -11.92486 -11.87251 -11.59633 -11.48351 -11.36154 -11.13975 -11.07058 -10.91156 -10.80583 -10.51055 -9.78698 -9.47374 -8.93820 -7.92674 -5.19899 0.57764 1.15197 1.35883 1.48024 1.49142 1.57588 1.99704 2.34080 2.57622 2.80970 3.29399 3.40579 3.62312 3.73748 3.79187 3.81857 3.84671 3.93215 3.97300 4.02992 4.08148 4.16330 4.24855 4.28856 4.36762 4.45526 4.50280 4.55657 4.61887 4.65893 4.68210 4.73471 4.76281 4.80913 4.86236 4.91547 4.98046 5.03572 5.14586 5.15999 5.17071 5.21089 5.24681 5.31641 5.39153 5.41853 5.50721 5.58059 5.66746 5.87716 6.30314 6.43679 6.53338 7.20369 7.36932 8.14091 8.38307 9.30638 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002218 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.830114 B =12618.827979 C =14344.931308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.063 0.937 4 C 0.122 3.878 5 N -0.602 5.602 6 C 0.597 3.403 7 O -0.588 6.588 8 C -0.312 4.312 9 C 0.078 3.922 10 N -0.316 5.316 11 N -0.353 5.353 12 C 0.156 3.844 13 C -0.185 4.185 14 C -0.176 4.176 15 C -0.158 4.158 16 C 0.129 3.871 17 C 0.107 3.893 18 C -0.118 4.118 19 C -0.078 4.078 20 H 0.071 0.929 21 C 0.156 3.844 22 N -0.741 5.741 23 C -0.243 4.243 24 H 0.071 0.929 25 C -0.075 4.075 26 N -0.966 5.966 27 Si 0.970 3.030 28 H -0.288 1.288 29 H -0.295 1.295 30 H -0.271 1.271 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.207 0.793 37 H 0.101 0.899 38 H 0.130 0.870 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.208 0.792 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.065 0.935 48 H 0.052 0.948 49 H 0.008 0.992 50 H 0.027 0.973 51 H 0.376 0.624 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.405 4.167 23.865 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.081 0.919 4 C 0.000 4.000 5 N -0.332 5.332 6 C 0.387 3.613 7 O -0.470 6.470 8 C -0.327 4.327 9 C -0.109 4.109 10 N -0.136 5.136 11 N -0.131 5.131 12 C 0.036 3.964 13 C -0.204 4.204 14 C -0.213 4.213 15 C -0.195 4.195 16 C -0.023 4.023 17 C -0.016 4.016 18 C -0.157 4.157 19 C -0.097 4.097 20 H 0.090 0.910 21 C 0.030 3.970 22 N -0.384 5.384 23 C -0.375 4.375 24 H 0.089 0.911 25 C -0.267 4.267 26 N -0.617 5.617 27 Si 0.799 3.201 28 H -0.216 1.216 29 H -0.221 1.221 30 H -0.196 1.196 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.223 0.777 37 H 0.119 0.881 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.133 0.867 44 H 0.225 0.775 45 H 0.105 0.895 46 H 0.120 0.880 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.026 0.974 50 H 0.045 0.955 51 H 0.208 0.792 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.376 4.141 24.073 28.343 hybrid contribution -0.927 0.091 -1.276 1.580 sum 13.450 4.231 22.796 26.804 Atomic orbital electron populations 1.21800 0.93392 1.02656 1.02283 1.21342 0.96842 0.99113 0.93330 0.91877 1.21691 0.78552 1.01420 0.98324 1.47944 1.06966 1.60523 1.17813 1.17527 0.85569 0.76984 0.81180 1.90715 1.75796 1.44237 1.36224 1.20188 0.93427 1.01660 1.17447 1.24460 0.90296 0.98820 0.97292 1.77134 1.17990 1.01570 1.16917 1.48726 1.06896 1.15780 1.41702 1.21738 0.78280 0.95875 1.00465 1.22431 0.99945 0.99694 0.98341 1.23214 1.03104 1.03860 0.91149 1.23083 0.90134 1.04361 1.01960 1.23275 0.84064 0.99086 0.95903 1.22148 0.99334 0.97535 0.82564 1.21800 0.95515 1.00612 0.97729 1.21225 0.95132 0.99776 0.93572 0.91043 1.20893 0.96797 0.93483 0.85823 1.42548 1.65414 1.28920 1.01506 1.19598 1.26734 1.05934 0.85232 0.91100 1.25506 1.01780 0.98081 1.01340 1.69795 1.44344 1.18515 1.29065 0.85192 0.77996 0.76765 0.80128 1.21566 1.22133 1.19643 0.91912 0.91174 0.92629 0.90018 0.89515 0.77705 0.88066 0.85245 0.88840 0.87065 0.88950 0.88217 0.86675 0.77529 0.89517 0.88048 0.91657 0.92935 0.97426 0.95484 0.79167 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.82 71.98 0.63 -2.69 16 2 C -0.09 -2.23 2.41 -10.72 -0.03 -2.26 16 3 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 4 C 0.12 2.94 5.73 86.36 0.49 3.44 16 5 N -0.60 -15.07 2.97 -822.75 -2.45 -17.51 16 6 C 0.60 16.34 7.61 86.66 0.66 17.00 16 7 O -0.59 -19.44 16.46 -4.05 -0.07 -19.51 16 8 C -0.31 -7.25 5.46 -20.15 -0.11 -7.36 16 9 C 0.08 1.69 9.57 85.65 0.82 2.51 16 10 N -0.32 -7.13 12.14 -56.28 -0.68 -7.81 16 11 N -0.35 -6.29 3.65 -346.28 -1.26 -7.55 16 12 C 0.16 1.63 6.77 86.38 0.58 2.22 16 13 C -0.19 -2.15 5.92 -10.79 -0.06 -2.21 16 14 C -0.18 -1.52 10.18 30.62 0.31 -1.21 16 15 C -0.16 -1.20 10.25 30.62 0.31 -0.88 16 16 C 0.13 2.42 11.38 84.27 0.96 3.38 16 17 C 0.11 2.50 5.25 86.36 0.45 2.96 16 18 C -0.12 -3.54 5.25 30.67 0.16 -3.38 16 19 C -0.08 -2.41 1.73 -10.77 -0.02 -2.43 16 20 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 21 C 0.16 6.20 5.41 86.38 0.47 6.67 16 22 N -0.74 -37.23 5.32 -343.44 -1.83 -39.06 16 23 C -0.24 -13.62 9.99 84.04 0.84 -12.78 16 24 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 25 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 26 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 27 Si 0.97 46.29 29.55 68.60 2.03 48.31 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 29 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 30 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 31 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.42 6.29 -2.38 -0.02 1.41 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 2.21 7.00 -2.39 -0.02 2.19 16 36 H 0.21 3.60 6.68 -2.91 -0.02 3.58 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.13 0.57 7.80 -2.39 -0.02 0.55 16 39 H 0.09 1.60 7.90 -2.39 -0.02 1.58 16 40 H 0.11 0.65 8.03 -2.39 -0.02 0.63 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 44 H 0.21 2.71 8.06 -2.91 -0.02 2.69 16 45 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.10 2.22 4.34 -2.38 -0.01 2.21 16 47 H 0.06 2.27 7.15 -2.39 -0.02 2.26 16 48 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 50 H 0.03 1.08 6.14 -2.39 -0.01 1.06 16 51 H 0.38 19.78 6.85 -92.71 -0.63 19.14 16 52 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -73.20 411.78 3.26 -69.94 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.29 Total: 32.39 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 6.95 Total: -0.85 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.94 Total: -130.28 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.07 Total: -19.51 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -73.20 3.26 -69.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185458581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.574 kcal (2) G-P(sol) polarization free energy of solvation -73.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds