Wall clock time and date at job start Wed Apr 1 2020 04:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.52803 * 2 1 4 4 C 1.53195 * 109.49756 * 120.08325 * 2 1 3 5 5 N 1.46923 * 108.77733 * 65.31314 * 4 2 1 6 6 C 1.34780 * 120.63156 * 233.63341 * 5 4 2 7 7 O 1.21600 * 120.00085 * 356.28657 * 6 5 4 8 8 C 1.47426 * 120.00093 * 176.29222 * 6 5 4 9 9 C 1.41287 * 126.41523 * 42.96400 * 8 6 5 10 10 N 1.30450 * 108.02219 * 179.88179 * 9 8 6 11 11 N 1.39928 * 108.89760 * 0.38480 * 10 9 8 12 12 C 1.46498 * 125.75229 * 179.72866 * 11 10 9 13 13 C 1.52996 * 109.47636 * 305.02688 * 12 11 10 14 14 C 1.52998 * 117.50166 * 243.75373 * 13 12 11 15 15 C 1.52997 * 117.50366 * 175.09163 * 13 12 11 16 16 C 1.34260 * 108.49067 * 359.75512 * 11 10 9 17 17 C 1.46922 * 118.73951 * 53.60940 * 5 4 2 18 18 C 1.53193 * 108.77508 * 306.39333 * 17 5 4 19 19 C 1.53036 * 109.49746 * 239.91696 * 2 1 3 20 20 H 1.09000 * 109.46061 * 181.39468 * 19 2 1 21 21 C 1.53007 * 109.45034 * 61.42910 * 19 2 1 22 22 N 1.46501 * 109.47087 * 174.96450 * 21 19 2 23 23 C 1.36939 * 119.99349 * 179.97438 * 22 21 19 24 24 H 1.07997 * 120.00286 * 0.02562 * 23 22 21 25 25 C 1.38814 * 119.99537 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00176 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99913 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47139 * 90.00153 * 27 25 23 29 29 H 1.48506 * 109.47152 * 210.00073 * 27 25 23 30 30 H 1.48503 * 109.47252 * 330.00042 * 27 25 23 31 31 H 1.09005 * 109.47480 * 180.08140 * 1 2 3 32 32 H 1.08999 * 109.47587 * 300.08235 * 1 2 3 33 33 H 1.08999 * 109.47031 * 60.08460 * 1 2 3 34 34 H 1.09000 * 109.58245 * 305.52932 * 4 2 1 35 35 H 1.08999 * 109.70662 * 185.17568 * 4 2 1 36 36 H 1.08005 * 125.99338 * 0.02562 * 9 8 6 37 37 H 1.08997 * 109.47637 * 65.03265 * 12 11 10 38 38 H 1.09005 * 109.46882 * 185.03136 * 12 11 10 39 39 H 1.09005 * 115.54904 * 29.41666 * 13 12 11 40 40 H 1.08998 * 117.50144 * 359.97438 * 14 13 12 41 41 H 1.09002 * 117.50474 * 145.02212 * 14 13 12 42 42 H 1.08997 * 117.49713 * 214.98269 * 15 13 12 43 43 H 1.08995 * 117.49654 * 359.97037 * 15 13 12 44 44 H 1.07997 * 126.29051 * 180.02562 * 16 11 10 45 45 H 1.08998 * 109.58886 * 186.60006 * 17 5 4 46 46 H 1.09006 * 109.70291 * 66.24597 * 17 5 4 47 47 H 1.09000 * 109.49835 * 294.67889 * 18 17 5 48 48 H 1.09001 * 109.52168 * 174.59836 * 18 17 5 49 49 H 1.09001 * 109.46555 * 294.96585 * 21 19 2 50 50 H 1.09000 * 109.46719 * 54.96289 * 21 19 2 51 51 H 0.96994 * 119.99917 * 0.02562 * 22 21 19 52 52 H 0.96993 * 120.00200 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 1.6515 -2.1382 1.1696 6 6 0.9739 -2.7218 2.1779 7 8 0.7383 -2.0969 3.1941 8 6 0.5183 -4.1180 2.0490 9 6 1.2616 -5.1974 1.5211 10 7 0.5172 -6.2670 1.5797 11 7 -0.7228 -5.9264 2.1314 12 6 -1.8399 -6.8464 2.3598 13 6 -2.1948 -7.5528 1.0499 14 6 -3.5819 -7.2913 0.4595 15 6 -3.2662 -8.6437 1.1033 16 6 -0.7165 -4.6143 2.4157 17 6 2.0139 -2.9041 -0.0307 18 6 1.5029 -2.1558 -1.2660 19 6 2.0407 -0.7231 -1.2483 20 1 3.1305 -0.7445 -1.2352 21 6 1.5604 0.0171 -2.4983 22 7 2.1470 -0.6032 -3.6888 23 6 1.8579 -0.1073 -4.9321 24 1 1.1978 0.7413 -5.0349 25 6 2.4141 -0.6947 -6.0601 26 7 3.2190 -1.7286 -5.9347 27 14 2.0203 -0.0179 -7.7560 28 1 3.0131 1.0266 -8.1149 29 1 2.0760 -1.1172 -8.7529 30 1 0.6588 0.5751 -7.7485 31 1 -0.3634 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8892 33 1 -0.3633 0.5125 -0.8907 34 1 1.6007 -0.2732 2.1388 35 1 3.1273 -0.6465 1.3006 36 1 2.2703 -5.1465 1.1385 37 1 -1.5537 -7.5873 3.1062 38 1 -2.7045 -6.2866 2.7165 39 1 -1.3691 -7.6921 0.3521 40 1 -4.2418 -6.6163 1.0045 41 1 -3.6688 -7.2590 -0.6265 42 1 -3.1455 -9.5005 0.4405 43 1 -3.7179 -8.8585 2.0717 44 1 -1.5281 -4.0507 2.8517 45 1 1.5553 -3.8919 0.0138 46 1 3.0976 -3.0065 -0.0880 47 1 0.4132 -2.1355 -1.2541 48 1 1.8475 -2.6627 -2.1673 49 1 0.4734 -0.0382 -2.5579 50 1 1.8687 1.0611 -2.4432 51 1 2.7395 -1.3656 -3.5964 52 1 3.6079 -2.1388 -6.7229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185458584.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:41 Heat of formation + Delta-G solvation = 80.788325 kcal Electronic energy + Delta-G solvation = -30823.140502 eV Core-core repulsion = 26825.515629 eV Total energy + Delta-G solvation = -3997.624873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.67710 -39.99351 -38.04839 -37.72615 -34.90159 -33.66857 -32.92040 -31.71879 -30.51045 -30.25619 -27.95375 -26.96646 -26.34981 -23.86040 -23.06279 -22.86131 -22.54557 -22.06335 -21.14190 -20.61653 -19.73202 -18.41057 -17.76650 -17.03123 -16.46622 -16.16177 -15.72846 -15.44710 -15.21583 -14.93965 -14.67937 -14.34759 -14.08672 -13.97765 -13.79447 -13.57508 -13.46251 -13.20271 -12.97959 -12.81701 -12.45807 -12.32183 -12.15432 -12.08009 -12.00613 -11.52331 -11.30315 -11.17455 -11.00311 -10.94829 -10.89460 -10.73014 -10.57712 -10.32547 -10.17957 -10.11050 -9.95367 -9.80016 -9.63702 -9.60341 -8.85286 -8.81881 -8.43778 -6.88128 -5.74926 -3.02521 1.43898 2.03984 2.09925 2.95084 3.26018 3.31857 3.44312 3.49623 3.51034 3.90057 4.29704 4.41278 4.46618 4.54252 4.60542 4.62885 4.81677 4.86673 4.94455 4.96447 5.06050 5.10953 5.16976 5.24154 5.29511 5.35426 5.43077 5.46029 5.57637 5.60034 5.63392 5.69950 5.72667 5.79357 5.86722 5.93516 5.96012 6.12992 6.13254 6.21144 6.28234 6.35494 6.43457 6.53091 6.58477 6.60463 6.73167 6.86960 6.99296 7.34357 7.50940 7.72047 8.27097 8.44696 9.55731 10.14766 10.49361 11.48113 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009456 B = 0.002690 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.509760 B =10405.635584 C =12400.010836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.081 0.919 4 C 0.119 3.881 5 N -0.597 5.597 6 C 0.597 3.403 7 O -0.553 6.553 8 C -0.283 4.283 9 C 0.079 3.921 10 N -0.291 5.291 11 N -0.358 5.358 12 C 0.164 3.836 13 C -0.172 4.172 14 C -0.177 4.177 15 C -0.169 4.169 16 C 0.116 3.884 17 C 0.097 3.903 18 C -0.125 4.125 19 C -0.088 4.088 20 H 0.071 0.929 21 C 0.158 3.842 22 N -0.732 5.732 23 C -0.236 4.236 24 H 0.069 0.931 25 C -0.015 4.015 26 N -0.934 5.934 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.192 0.808 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.182 0.818 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.021 0.979 50 H 0.017 0.983 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.304 -10.411 19.867 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.329 5.329 6 C 0.385 3.615 7 O -0.432 6.432 8 C -0.298 4.298 9 C -0.108 4.108 10 N -0.111 5.111 11 N -0.137 5.137 12 C 0.043 3.957 13 C -0.191 4.191 14 C -0.214 4.214 15 C -0.207 4.207 16 C -0.034 4.034 17 C -0.026 4.026 18 C -0.164 4.164 19 C -0.107 4.107 20 H 0.089 0.911 21 C 0.031 3.969 22 N -0.376 5.376 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.211 4.211 26 N -0.583 5.583 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.209 0.791 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.199 0.801 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.104 0.896 49 H 0.038 0.962 50 H 0.034 0.966 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.688 -11.343 20.050 25.395 hybrid contribution 0.112 0.966 -1.021 1.410 sum -10.575 -10.377 19.029 24.117 Atomic orbital electron populations 1.21853 0.95018 1.01936 1.01334 1.21464 0.96589 0.99417 0.94281 0.90090 1.21666 0.99427 0.80154 0.99092 1.47900 1.55672 1.11414 1.17959 1.17284 0.76996 0.84769 0.82468 1.90744 1.57935 1.65405 1.29140 1.20190 0.96954 0.95490 1.17157 1.24137 1.00154 0.89181 0.97364 1.77156 0.91037 1.23416 1.19496 1.48419 1.11858 1.06580 1.46871 1.21370 0.85588 0.91849 0.96894 1.22565 0.94296 1.03239 0.98979 1.23138 0.97520 0.99350 1.01359 1.22986 1.01819 0.92929 1.02939 1.22813 0.98694 0.84675 0.97246 1.22139 1.00303 0.95814 0.84309 1.21945 1.01288 0.95927 0.97199 1.21305 1.00235 0.94752 0.94438 0.91053 1.20716 0.95858 0.94621 0.85720 1.42383 1.56816 1.37561 1.00848 1.19228 1.22910 1.10741 0.83887 0.91333 1.24715 1.00177 0.98415 0.97755 1.69648 1.35739 1.24427 1.28504 0.86213 0.77782 0.77785 0.84562 1.21781 1.21820 1.20839 0.92596 0.93404 0.92052 0.89227 0.91558 0.79085 0.88915 0.88271 0.86160 0.88494 0.88291 0.88199 0.88441 0.80058 0.89178 0.91163 0.91515 0.89588 0.96159 0.96555 0.78299 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.38 37.16 0.31 -1.59 16 2 C -0.10 -1.28 2.72 -90.50 -0.25 -1.53 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.48 5.82 -3.71 -0.02 1.46 16 5 N -0.60 -7.61 2.41 -174.04 -0.42 -8.03 16 6 C 0.60 8.25 7.59 -12.52 -0.09 8.16 16 7 O -0.55 -9.24 16.52 5.28 0.09 -9.15 16 8 C -0.28 -3.39 5.34 -105.07 -0.56 -3.95 16 9 C 0.08 0.88 9.57 -16.98 -0.16 0.72 16 10 N -0.29 -3.38 12.14 30.86 0.37 -3.01 16 11 N -0.36 -3.46 3.65 -60.81 -0.22 -3.68 16 12 C 0.16 1.04 6.77 -4.04 -0.03 1.01 16 13 C -0.17 -1.20 5.92 -90.62 -0.54 -1.73 16 14 C -0.18 -1.08 10.18 -26.70 -0.27 -1.35 16 15 C -0.17 -0.89 10.25 -26.70 -0.27 -1.17 16 16 C 0.12 1.18 11.44 -16.56 -0.19 0.99 16 17 C 0.10 1.17 5.70 -3.71 -0.02 1.15 16 18 C -0.13 -1.85 4.91 -26.61 -0.13 -1.98 16 19 C -0.09 -1.36 1.96 -90.58 -0.18 -1.54 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 21 C 0.16 3.11 5.19 -4.04 -0.02 3.09 16 22 N -0.73 -18.16 5.32 -59.90 -0.32 -18.48 16 23 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 26 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 27 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 31 H 0.06 0.78 5.97 -51.93 -0.31 0.47 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.85 6.58 -51.93 -0.34 0.50 16 34 H 0.09 1.18 7.02 -51.93 -0.36 0.81 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.19 1.73 7.09 -52.48 -0.37 1.36 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.39 7.80 -51.93 -0.40 -0.01 16 39 H 0.12 1.11 7.90 -51.93 -0.41 0.70 16 40 H 0.10 0.49 8.03 -51.93 -0.42 0.07 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.09 1.02 4.14 -51.93 -0.21 0.80 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.03 6.34 -51.93 -0.33 0.70 16 48 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 49 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 50 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.38 9.88 6.85 -40.82 -0.28 9.60 16 52 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 408.42 15.07 6.15 6.15 Total: -1.00 -33.86 408.42 -9.67 -43.53 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -8.36 Total: 8.04 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -2.67 Total: -5.53 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.14 Total: -60.45 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.86 -9.67 -43.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185458584.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.323 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds