Wall clock time and date at job start Wed Apr 1 2020 04:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.52803 * 2 1 4 4 C 1.53195 * 109.49756 * 120.08325 * 2 1 3 5 5 N 1.46923 * 108.77733 * 65.31314 * 4 2 1 6 6 C 1.34780 * 120.63156 * 233.63341 * 5 4 2 7 7 O 1.21600 * 120.00085 * 356.28657 * 6 5 4 8 8 C 1.47426 * 120.00093 * 176.29222 * 6 5 4 9 9 C 1.41287 * 126.41523 * 42.96400 * 8 6 5 10 10 N 1.30450 * 108.02219 * 179.88179 * 9 8 6 11 11 N 1.39928 * 108.89760 * 0.38480 * 10 9 8 12 12 C 1.46498 * 125.75229 * 179.72866 * 11 10 9 13 13 C 1.52996 * 109.47636 * 305.02688 * 12 11 10 14 14 C 1.52998 * 117.50166 * 243.75373 * 13 12 11 15 15 C 1.52997 * 117.50366 * 175.09163 * 13 12 11 16 16 C 1.34260 * 108.49067 * 359.75512 * 11 10 9 17 17 C 1.46922 * 118.73951 * 53.60940 * 5 4 2 18 18 C 1.53193 * 108.77508 * 306.39333 * 17 5 4 19 19 C 1.53036 * 109.49746 * 239.91696 * 2 1 3 20 20 H 1.09000 * 109.46061 * 181.39468 * 19 2 1 21 21 C 1.53007 * 109.45034 * 61.42910 * 19 2 1 22 22 N 1.46501 * 109.47087 * 174.96450 * 21 19 2 23 23 C 1.36939 * 119.99349 * 179.97438 * 22 21 19 24 24 H 1.07997 * 120.00286 * 0.02562 * 23 22 21 25 25 C 1.38814 * 119.99537 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00176 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99913 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47139 * 90.00153 * 27 25 23 29 29 H 1.48506 * 109.47152 * 210.00073 * 27 25 23 30 30 H 1.48503 * 109.47252 * 330.00042 * 27 25 23 31 31 H 1.09005 * 109.47480 * 180.08140 * 1 2 3 32 32 H 1.08999 * 109.47587 * 300.08235 * 1 2 3 33 33 H 1.08999 * 109.47031 * 60.08460 * 1 2 3 34 34 H 1.09000 * 109.58245 * 305.52932 * 4 2 1 35 35 H 1.08999 * 109.70662 * 185.17568 * 4 2 1 36 36 H 1.08005 * 125.99338 * 0.02562 * 9 8 6 37 37 H 1.08997 * 109.47637 * 65.03265 * 12 11 10 38 38 H 1.09005 * 109.46882 * 185.03136 * 12 11 10 39 39 H 1.09005 * 115.54904 * 29.41666 * 13 12 11 40 40 H 1.08998 * 117.50144 * 359.97438 * 14 13 12 41 41 H 1.09002 * 117.50474 * 145.02212 * 14 13 12 42 42 H 1.08997 * 117.49713 * 214.98269 * 15 13 12 43 43 H 1.08995 * 117.49654 * 359.97037 * 15 13 12 44 44 H 1.07997 * 126.29051 * 180.02562 * 16 11 10 45 45 H 1.08998 * 109.58886 * 186.60006 * 17 5 4 46 46 H 1.09006 * 109.70291 * 66.24597 * 17 5 4 47 47 H 1.09000 * 109.49835 * 294.67889 * 18 17 5 48 48 H 1.09001 * 109.52168 * 174.59836 * 18 17 5 49 49 H 1.09001 * 109.46555 * 294.96585 * 21 19 2 50 50 H 1.09000 * 109.46719 * 54.96289 * 21 19 2 51 51 H 0.96994 * 119.99917 * 0.02562 * 22 21 19 52 52 H 0.96993 * 120.00200 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 1.6515 -2.1382 1.1696 6 6 0.9739 -2.7218 2.1779 7 8 0.7383 -2.0969 3.1941 8 6 0.5183 -4.1180 2.0490 9 6 1.2616 -5.1974 1.5211 10 7 0.5172 -6.2670 1.5797 11 7 -0.7228 -5.9264 2.1314 12 6 -1.8399 -6.8464 2.3598 13 6 -2.1948 -7.5528 1.0499 14 6 -3.5819 -7.2913 0.4595 15 6 -3.2662 -8.6437 1.1033 16 6 -0.7165 -4.6143 2.4157 17 6 2.0139 -2.9041 -0.0307 18 6 1.5029 -2.1558 -1.2660 19 6 2.0407 -0.7231 -1.2483 20 1 3.1305 -0.7445 -1.2352 21 6 1.5604 0.0171 -2.4983 22 7 2.1470 -0.6032 -3.6888 23 6 1.8579 -0.1073 -4.9321 24 1 1.1978 0.7413 -5.0349 25 6 2.4141 -0.6947 -6.0601 26 7 3.2190 -1.7286 -5.9347 27 14 2.0203 -0.0179 -7.7560 28 1 3.0131 1.0266 -8.1149 29 1 2.0760 -1.1172 -8.7529 30 1 0.6588 0.5751 -7.7485 31 1 -0.3634 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8892 33 1 -0.3633 0.5125 -0.8907 34 1 1.6007 -0.2732 2.1388 35 1 3.1273 -0.6465 1.3006 36 1 2.2703 -5.1465 1.1385 37 1 -1.5537 -7.5873 3.1062 38 1 -2.7045 -6.2866 2.7165 39 1 -1.3691 -7.6921 0.3521 40 1 -4.2418 -6.6163 1.0045 41 1 -3.6688 -7.2590 -0.6265 42 1 -3.1455 -9.5005 0.4405 43 1 -3.7179 -8.8585 2.0717 44 1 -1.5281 -4.0507 2.8517 45 1 1.5553 -3.8919 0.0138 46 1 3.0976 -3.0065 -0.0880 47 1 0.4132 -2.1355 -1.2541 48 1 1.8475 -2.6627 -2.1673 49 1 0.4734 -0.0382 -2.5579 50 1 1.8687 1.0611 -2.4432 51 1 2.7395 -1.3656 -3.5964 52 1 3.6079 -2.1388 -6.7229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185458584.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:40 Heat of formation + Delta-G solvation = 61.348026 kcal Electronic energy + Delta-G solvation = -30823.983497 eV Core-core repulsion = 26825.515629 eV Total energy + Delta-G solvation = -3998.467868 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.50271 -41.05543 -39.06767 -38.41696 -36.51592 -34.92805 -33.89947 -33.12088 -31.91740 -31.35300 -28.71120 -28.46382 -27.36045 -25.56171 -24.30567 -23.64915 -23.31112 -22.79281 -22.44672 -21.30358 -20.70483 -19.65714 -19.01574 -18.50481 -17.44444 -16.93932 -16.76539 -16.66020 -16.21557 -16.04258 -15.79442 -15.45239 -15.33165 -15.21927 -14.83939 -14.76909 -14.66301 -14.31151 -14.01119 -13.85789 -13.68192 -13.53273 -13.43134 -12.96132 -12.81147 -12.74956 -12.63166 -12.41850 -12.38363 -12.16919 -12.02401 -11.97198 -11.89042 -11.52129 -11.44767 -11.32628 -11.19035 -11.06146 -10.88976 -10.79410 -10.49130 -9.73743 -9.45247 -8.94413 -7.92874 -5.20206 0.63830 1.20346 1.37808 1.47823 1.49009 1.57313 1.95813 2.31091 2.57501 2.81280 3.31394 3.40578 3.63206 3.76854 3.80964 3.81847 3.86036 3.92314 3.97957 4.03960 4.12881 4.17930 4.26461 4.29091 4.36370 4.46300 4.50653 4.51171 4.62863 4.67838 4.70374 4.76385 4.78380 4.83574 4.89386 4.92438 4.98594 5.02485 5.11673 5.17649 5.21290 5.21486 5.23818 5.27661 5.34635 5.42850 5.51930 5.58453 5.69203 5.89943 6.30170 6.46057 6.55136 7.22460 7.36755 8.14188 8.37955 9.30520 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009456 B = 0.002690 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.509760 B =10405.635584 C =12400.010836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.093 0.907 4 C 0.121 3.879 5 N -0.595 5.595 6 C 0.599 3.401 7 O -0.585 6.585 8 C -0.309 4.309 9 C 0.076 3.924 10 N -0.316 5.316 11 N -0.353 5.353 12 C 0.158 3.842 13 C -0.184 4.184 14 C -0.181 4.181 15 C -0.155 4.155 16 C 0.123 3.877 17 C 0.107 3.893 18 C -0.118 4.118 19 C -0.078 4.078 20 H 0.069 0.931 21 C 0.159 3.841 22 N -0.742 5.742 23 C -0.243 4.243 24 H 0.071 0.929 25 C -0.074 4.074 26 N -0.967 5.967 27 Si 0.969 3.031 28 H -0.287 1.287 29 H -0.295 1.295 30 H -0.272 1.272 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.205 0.795 37 H 0.104 0.896 38 H 0.129 0.871 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.207 0.793 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.018 0.982 50 H 0.016 0.984 51 H 0.375 0.625 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.519 -10.372 21.097 26.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.111 0.889 4 C -0.001 4.001 5 N -0.326 5.326 6 C 0.389 3.611 7 O -0.467 6.467 8 C -0.324 4.324 9 C -0.110 4.110 10 N -0.136 5.136 11 N -0.132 5.132 12 C 0.039 3.961 13 C -0.203 4.203 14 C -0.217 4.217 15 C -0.193 4.193 16 C -0.028 4.028 17 C -0.016 4.016 18 C -0.156 4.156 19 C -0.097 4.097 20 H 0.087 0.913 21 C 0.033 3.967 22 N -0.385 5.385 23 C -0.375 4.375 24 H 0.089 0.911 25 C -0.266 4.266 26 N -0.618 5.618 27 Si 0.799 3.201 28 H -0.215 1.215 29 H -0.222 1.222 30 H -0.197 1.197 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.222 0.778 37 H 0.122 0.878 38 H 0.147 0.853 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.136 0.864 44 H 0.224 0.776 45 H 0.118 0.882 46 H 0.102 0.898 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.036 0.964 50 H 0.034 0.966 51 H 0.208 0.792 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.922 -11.300 21.289 26.889 hybrid contribution 0.417 0.940 -1.377 1.719 sum -11.504 -10.361 19.912 25.222 Atomic orbital electron populations 1.21793 0.94999 1.01395 1.01438 1.21405 0.96476 0.99813 0.93204 0.88922 1.21674 1.00227 0.79898 0.98333 1.47914 1.55339 1.11557 1.17786 1.17488 0.76376 0.85269 0.81988 1.90721 1.59251 1.66385 1.30300 1.20182 0.98191 0.94810 1.19200 1.24362 1.00726 0.88850 0.97085 1.77119 0.92112 1.23980 1.20397 1.48692 1.11838 1.06899 1.45735 1.21716 0.85570 0.92087 0.96754 1.22440 0.93867 1.05018 0.99013 1.23204 0.97111 1.00436 1.00989 1.23076 1.00166 0.92315 1.03728 1.23221 0.98722 0.84881 0.96012 1.22075 1.01073 0.95671 0.82760 1.21809 1.00702 0.95616 0.97480 1.21187 1.00002 0.94913 0.93575 0.91282 1.20846 0.95372 0.94705 0.85819 1.42568 1.56852 1.37496 1.01580 1.19601 1.22203 1.10440 0.85275 0.91086 1.25497 1.00695 0.99094 1.01329 1.69796 1.37080 1.25809 1.29093 0.85200 0.77955 0.76926 0.80051 1.21468 1.22173 1.19676 0.93454 0.92256 0.92918 0.89418 0.90189 0.77835 0.87767 0.85284 0.89057 0.86977 0.89467 0.88389 0.86360 0.77626 0.88224 0.89779 0.92292 0.92123 0.96416 0.96647 0.79193 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.38 71.98 0.60 -2.91 16 2 C -0.09 -2.22 2.72 -10.72 -0.03 -2.24 16 3 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.12 2.82 5.82 86.36 0.50 3.33 16 5 N -0.59 -14.45 2.41 -822.79 -1.98 -16.43 16 6 C 0.60 15.95 7.59 86.66 0.66 16.61 16 7 O -0.59 -18.97 16.52 -4.03 -0.07 -19.04 16 8 C -0.31 -7.08 5.34 -20.15 -0.11 -7.19 16 9 C 0.08 1.65 9.57 85.65 0.82 2.47 16 10 N -0.32 -7.15 12.14 -56.27 -0.68 -7.83 16 11 N -0.35 -6.32 3.65 -346.31 -1.26 -7.58 16 12 C 0.16 1.68 6.77 86.38 0.58 2.26 16 13 C -0.18 -2.39 5.92 -10.80 -0.06 -2.45 16 14 C -0.18 -1.97 10.18 30.62 0.31 -1.66 16 15 C -0.16 -1.37 10.25 30.62 0.31 -1.06 16 16 C 0.12 2.30 11.44 84.27 0.96 3.26 16 17 C 0.11 2.49 5.70 86.36 0.49 2.98 16 18 C -0.12 -3.47 4.91 30.67 0.15 -3.32 16 19 C -0.08 -2.36 1.96 -10.77 -0.02 -2.38 16 20 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 21 C 0.16 6.23 5.19 86.38 0.45 6.68 16 22 N -0.74 -37.22 5.32 -343.43 -1.83 -39.05 16 23 C -0.24 -13.60 9.99 84.03 0.84 -12.76 16 24 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 25 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 26 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 27 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 28 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 29 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 30 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 31 H 0.05 1.27 5.97 -2.38 -0.01 1.26 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.41 6.58 -2.39 -0.02 1.39 16 34 H 0.09 2.16 7.02 -2.39 -0.02 2.14 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.21 3.55 7.09 -2.91 -0.02 3.53 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.13 0.59 7.80 -2.38 -0.02 0.57 16 39 H 0.09 1.74 7.90 -2.38 -0.02 1.72 16 40 H 0.11 0.87 8.03 -2.39 -0.02 0.85 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.21 2.64 8.06 -2.91 -0.02 2.62 16 45 H 0.10 2.19 4.14 -2.39 -0.01 2.18 16 46 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.06 1.82 6.34 -2.39 -0.02 1.80 16 48 H 0.06 2.12 7.15 -2.39 -0.02 2.10 16 49 H 0.02 0.72 6.74 -2.39 -0.02 0.70 16 50 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.38 19.78 6.85 -92.71 -0.63 19.15 16 52 H 0.25 14.78 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -72.91 408.42 3.71 -69.19 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.29 Total: 33.08 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 6.93 Total: -2.15 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -5.47 Total: -129.31 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.07 Total: -19.04 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -72.91 3.71 -69.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185458584.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.542 kcal (2) G-P(sol) polarization free energy of solvation -72.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds