Wall clock time and date at job start Wed Apr 1 2020 04:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.50133 * 2 1 4 4 C 1.53195 * 109.49661 * 239.94015 * 2 1 3 5 5 N 1.46929 * 108.77792 * 185.38432 * 4 2 1 6 6 C 1.34780 * 120.62775 * 233.58768 * 5 4 2 7 7 O 1.21622 * 119.99967 * 5.14294 * 6 5 4 8 8 C 1.47166 * 119.99573 * 185.15039 * 6 5 4 9 9 C 1.38099 * 126.93277 * 260.14272 * 8 6 5 10 10 C 1.39529 * 105.70057 * 180.02562 * 9 8 6 11 11 N 1.31062 * 107.60195 * 359.97438 * 10 9 8 12 12 N 1.28446 * 110.97023 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.20030 * 179.97438 * 12 11 10 14 14 C 1.51572 * 109.44664 * 180.12171 * 10 9 8 15 15 C 1.54376 * 105.12950 * 16.88741 * 14 10 9 16 16 C 1.50852 * 144.41426 * 0.08105 * 9 8 6 17 17 C 1.46921 * 118.73853 * 53.85431 * 5 4 2 18 18 C 1.53625 * 108.54516 * 306.09727 * 17 5 4 19 19 C 1.53036 * 109.52512 * 120.08296 * 2 1 3 20 20 H 1.08999 * 109.46130 * 61.31568 * 19 2 1 21 21 C 1.52998 * 109.46129 * 301.35221 * 19 2 1 22 22 N 1.46501 * 109.47005 * 175.00011 * 21 19 2 23 23 C 1.36941 * 119.99436 * 179.97438 * 22 21 19 24 24 H 1.07999 * 120.00236 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99669 * 179.97438 * 23 22 21 26 26 N 1.31625 * 119.99724 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00030 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46897 * 60.00516 * 27 25 23 29 29 H 1.48497 * 109.47035 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47175 * 300.00242 * 27 25 23 31 31 H 1.08998 * 109.47477 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47179 * 300.06466 * 1 2 3 33 33 H 1.08997 * 109.47403 * 60.05999 * 1 2 3 34 34 H 1.09001 * 109.59140 * 65.59122 * 4 2 1 35 35 H 1.09000 * 109.70223 * 305.23600 * 4 2 1 36 36 H 1.08999 * 109.47220 * 274.98075 * 13 12 11 37 37 H 1.09001 * 109.47084 * 34.98112 * 13 12 11 38 38 H 1.09000 * 109.47053 * 154.97988 * 13 12 11 39 39 H 1.08996 * 110.24083 * 258.04170 * 14 10 9 40 40 H 1.09002 * 110.46603 * 135.84743 * 14 10 9 41 41 H 1.09002 * 110.77826 * 215.53041 * 15 14 10 42 42 H 1.09006 * 110.78198 * 92.28455 * 15 14 10 43 43 H 1.08994 * 110.30367 * 43.99162 * 16 9 8 44 44 H 1.09000 * 110.29949 * 281.83923 * 16 9 8 45 45 H 1.08992 * 109.59144 * 65.93262 * 17 5 4 46 46 H 1.09001 * 109.58475 * 186.35867 * 17 5 4 47 47 H 1.09003 * 109.63384 * 294.86689 * 18 17 5 48 48 H 1.09000 * 109.46243 * 174.74261 * 18 17 5 49 49 H 1.09000 * 109.47041 * 295.00253 * 21 19 2 50 50 H 1.09003 * 109.47064 * 54.99983 * 21 19 2 51 51 H 0.96998 * 120.00094 * 0.02562 * 22 21 19 52 52 H 0.97000 * 119.99594 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2499 5 7 3.5046 -0.8281 -1.1703 6 6 4.2806 -0.3849 -2.1792 7 8 3.7780 0.1916 -3.1249 8 6 5.7361 -0.5985 -2.1365 9 6 6.6990 0.3192 -1.7655 10 6 7.9201 -0.3447 -1.8871 11 7 7.6695 -1.5629 -2.3004 12 7 6.4076 -1.7450 -2.4561 13 6 5.7836 -2.9912 -2.9077 14 6 9.0451 0.5921 -1.4944 15 6 8.3624 1.7380 -0.7172 16 6 6.9283 1.7321 -1.2893 17 6 4.1056 -1.4307 0.0273 18 6 3.5715 -0.6943 1.2653 19 6 2.0414 -0.7230 1.2481 20 1 1.6979 -1.7573 1.2350 21 6 1.5044 -0.0236 2.4984 22 7 1.8945 -0.7835 3.6886 23 6 1.5240 -0.3457 4.9321 24 1 0.9440 0.5594 5.0354 25 6 1.8932 -1.0660 6.0599 26 7 2.5997 -2.1694 5.9339 27 14 1.3886 -0.4686 7.7563 28 1 -0.0929 -0.4072 7.8390 29 1 1.9037 -1.4073 8.7852 30 1 1.9541 0.8838 7.9933 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5149 0.8894 33 1 -0.3634 0.5129 -0.8905 34 1 1.7632 -0.1575 -2.1391 35 1 1.6058 -1.7213 -1.3009 36 1 5.7838 -3.0236 -3.9972 37 1 6.3453 -3.8405 -2.5188 38 1 4.7574 -3.0366 -2.5430 39 1 9.5398 0.9813 -2.3842 40 1 9.7637 0.0781 -0.8559 41 1 8.8554 2.6891 -0.9184 42 1 8.3528 1.5279 0.3524 43 1 6.2098 1.9904 -0.5115 44 1 6.8510 2.4296 -2.1234 45 1 3.8350 -2.4851 0.0810 46 1 5.1901 -1.3316 -0.0188 47 1 3.9161 0.3398 1.2534 48 1 3.9345 -1.1884 2.1665 49 1 1.9186 0.9829 2.5579 50 1 0.4172 0.0337 2.4440 51 1 2.4158 -1.5962 3.5958 52 1 2.8580 -2.6725 6.7220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185482835.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:21 Heat of formation + Delta-G solvation = 56.702349 kcal Electronic energy + Delta-G solvation = -31662.840065 eV Core-core repulsion = 27664.170745 eV Total energy + Delta-G solvation = -3998.669320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.87765 -40.18022 -38.03176 -37.11376 -35.06662 -33.67918 -32.40373 -32.03723 -30.97659 -30.32446 -27.87661 -26.95019 -26.89026 -26.42082 -24.01281 -22.91211 -22.41445 -21.56502 -21.01468 -20.47471 -19.74098 -18.78359 -17.55318 -17.08978 -16.86463 -16.08585 -15.91754 -15.28466 -15.21572 -14.83357 -14.55290 -14.29870 -14.07515 -13.93031 -13.60210 -13.29635 -13.16185 -13.13122 -12.97635 -12.90222 -12.75101 -12.58410 -12.49555 -12.02318 -11.98590 -11.86724 -11.64939 -11.36815 -11.18538 -11.02456 -10.92851 -10.82800 -10.53619 -10.44352 -10.38851 -10.23244 -10.15534 -9.98265 -9.65328 -9.10787 -8.87957 -8.74658 -8.70659 -6.92355 -5.78405 -3.06383 1.49593 1.91689 2.44616 2.47497 2.89981 3.42807 3.47420 3.48174 3.69060 4.15253 4.55692 4.56975 4.61342 4.75204 4.77835 4.85286 4.87949 4.90948 4.94476 5.03525 5.05043 5.09454 5.23920 5.38165 5.43271 5.45745 5.54959 5.55624 5.60602 5.63340 5.71896 5.73080 5.79645 5.80904 5.86485 5.89958 5.93457 6.02431 6.03550 6.16209 6.25054 6.28276 6.33793 6.39171 6.46032 6.58497 6.64421 6.80197 6.90134 7.14771 7.68297 7.84935 7.92720 8.40993 9.52093 10.10162 10.44671 11.44504 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.002935 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.133461 B = 9539.189174 C =10733.051186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.074 0.926 4 C 0.117 3.883 5 N -0.596 5.596 6 C 0.594 3.406 7 O -0.528 6.528 8 C -0.005 4.005 9 C -0.181 4.181 10 C 0.008 3.992 11 N -0.267 5.267 12 N -0.275 5.275 13 C 0.092 3.908 14 C -0.025 4.025 15 C -0.116 4.116 16 C -0.044 4.044 17 C 0.106 3.894 18 C -0.122 4.122 19 C -0.089 4.089 20 H 0.072 0.928 21 C 0.157 3.843 22 N -0.732 5.732 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.935 5.935 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.017 0.983 50 H 0.025 0.975 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 2.099 -19.141 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.005 4.005 5 N -0.329 5.329 6 C 0.378 3.622 7 O -0.403 6.403 8 C -0.133 4.133 9 C -0.192 4.192 10 C -0.151 4.151 11 N -0.097 5.097 12 N -0.064 5.064 13 C -0.049 4.049 14 C -0.064 4.064 15 C -0.154 4.154 16 C -0.082 4.082 17 C -0.016 4.016 18 C -0.160 4.160 19 C -0.108 4.108 20 H 0.090 0.910 21 C 0.029 3.971 22 N -0.376 5.376 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.583 5.583 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.035 0.965 50 H 0.042 0.958 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.105 1.312 -19.861 21.491 hybrid contribution -0.545 0.477 1.197 1.399 sum 7.559 1.789 -18.665 20.217 Atomic orbital electron populations 1.21828 0.94213 1.02225 1.02168 1.21455 0.96216 1.00030 0.93953 0.90726 1.21805 0.77827 1.01185 0.99656 1.48169 1.07182 1.59434 1.18075 1.17100 0.83791 0.78824 0.82456 1.90815 1.73899 1.41273 1.34311 1.20360 0.92908 0.89193 1.10791 1.21117 0.92206 0.98405 1.07432 1.22811 0.97607 0.90706 1.04011 1.72651 0.97146 1.19494 1.20423 1.45664 1.02577 1.10129 1.47985 1.22146 0.98578 0.82560 1.01584 1.20471 0.93565 0.92158 1.00203 1.22387 0.94497 0.98205 1.00305 1.20375 0.97166 0.90375 1.00326 1.21987 0.98144 0.97233 0.84265 1.21978 0.96022 1.01163 0.96872 1.21347 0.94601 1.00191 0.94620 0.90952 1.20747 0.96671 0.94069 0.85571 1.42364 1.65363 1.29031 1.00834 1.19184 1.27726 1.06251 0.83846 0.91332 1.24715 1.00907 0.97510 0.97784 1.69642 1.42714 1.17303 1.28679 0.86280 0.78049 0.77675 0.84271 1.21308 1.21697 1.21293 0.92482 0.91201 0.92940 0.89001 0.91085 0.89641 0.88117 0.88976 0.89828 0.90149 0.89839 0.90349 0.90654 0.90239 0.91045 0.90170 0.91600 0.89194 0.96550 0.95760 0.78349 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.82 37.15 0.33 -1.36 16 2 C -0.10 -1.22 2.41 -90.50 -0.22 -1.44 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.38 5.72 -3.71 -0.02 1.35 16 5 N -0.60 -7.46 2.97 -173.87 -0.52 -7.98 16 6 C 0.59 8.41 6.89 -12.63 -0.09 8.33 16 7 O -0.53 -8.96 16.52 5.26 0.09 -8.87 16 8 C -0.01 -0.07 4.66 -82.14 -0.38 -0.45 16 9 C -0.18 -2.37 7.02 -104.12 -0.73 -3.10 16 10 C 0.01 0.10 8.14 -82.01 -0.67 -0.57 16 11 N -0.27 -3.58 11.91 33.86 0.40 -3.18 16 12 N -0.28 -3.39 3.75 -63.95 -0.24 -3.63 16 13 C 0.09 0.75 11.22 59.85 0.67 1.42 16 14 C -0.02 -0.22 6.79 -26.73 -0.18 -0.40 16 15 C -0.12 -0.93 7.06 -25.27 -0.18 -1.11 16 16 C -0.04 -0.46 6.76 -27.07 -0.18 -0.65 16 17 C 0.11 1.31 6.35 -3.49 -0.02 1.28 16 18 C -0.12 -1.79 5.26 -26.38 -0.14 -1.92 16 19 C -0.09 -1.33 1.73 -90.58 -0.16 -1.48 16 20 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 21 C 0.16 3.01 5.41 -4.04 -0.02 2.99 16 22 N -0.73 -17.84 5.32 -59.91 -0.32 -18.16 16 23 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 24 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 25 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 27 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.88 6.31 -51.93 -0.33 0.55 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 1.13 6.99 -51.93 -0.36 0.77 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.69 7.66 -51.93 -0.40 0.29 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.08 1.02 6.38 -51.93 -0.33 0.69 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.09 1.52 7.15 -51.93 -0.37 1.14 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.02 0.47 6.15 -51.93 -0.32 0.15 16 51 H 0.38 9.72 6.84 -40.82 -0.28 9.44 16 52 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 407.98 15.07 6.15 6.15 Total: -1.00 -33.80 407.98 -9.67 -43.47 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.70 Total: 6.32 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.24 Total: -4.30 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.05 Total: -59.91 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.80 -9.67 -43.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185482835.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.174 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds