Wall clock time and date at job start Wed Apr 1 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.50133 * 2 1 4 4 C 1.53195 * 109.49661 * 239.94015 * 2 1 3 5 5 N 1.46929 * 108.77792 * 185.38432 * 4 2 1 6 6 C 1.34780 * 120.62775 * 233.58768 * 5 4 2 7 7 O 1.21622 * 119.99967 * 5.14294 * 6 5 4 8 8 C 1.47166 * 119.99573 * 185.15039 * 6 5 4 9 9 C 1.38099 * 126.93277 * 260.14272 * 8 6 5 10 10 C 1.39529 * 105.70057 * 180.02562 * 9 8 6 11 11 N 1.31062 * 107.60195 * 359.97438 * 10 9 8 12 12 N 1.28446 * 110.97023 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.20030 * 179.97438 * 12 11 10 14 14 C 1.51572 * 109.44664 * 180.12171 * 10 9 8 15 15 C 1.54376 * 105.12950 * 16.88741 * 14 10 9 16 16 C 1.50852 * 144.41426 * 0.08105 * 9 8 6 17 17 C 1.46921 * 118.73853 * 53.85431 * 5 4 2 18 18 C 1.53625 * 108.54516 * 306.09727 * 17 5 4 19 19 C 1.53036 * 109.52512 * 120.08296 * 2 1 3 20 20 H 1.08999 * 109.46130 * 61.31568 * 19 2 1 21 21 C 1.52998 * 109.46129 * 301.35221 * 19 2 1 22 22 N 1.46501 * 109.47005 * 175.00011 * 21 19 2 23 23 C 1.36941 * 119.99436 * 179.97438 * 22 21 19 24 24 H 1.07999 * 120.00236 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99669 * 179.97438 * 23 22 21 26 26 N 1.31625 * 119.99724 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00030 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46897 * 60.00516 * 27 25 23 29 29 H 1.48497 * 109.47035 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47175 * 300.00242 * 27 25 23 31 31 H 1.08998 * 109.47477 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47179 * 300.06466 * 1 2 3 33 33 H 1.08997 * 109.47403 * 60.05999 * 1 2 3 34 34 H 1.09001 * 109.59140 * 65.59122 * 4 2 1 35 35 H 1.09000 * 109.70223 * 305.23600 * 4 2 1 36 36 H 1.08999 * 109.47220 * 274.98075 * 13 12 11 37 37 H 1.09001 * 109.47084 * 34.98112 * 13 12 11 38 38 H 1.09000 * 109.47053 * 154.97988 * 13 12 11 39 39 H 1.08996 * 110.24083 * 258.04170 * 14 10 9 40 40 H 1.09002 * 110.46603 * 135.84743 * 14 10 9 41 41 H 1.09002 * 110.77826 * 215.53041 * 15 14 10 42 42 H 1.09006 * 110.78198 * 92.28455 * 15 14 10 43 43 H 1.08994 * 110.30367 * 43.99162 * 16 9 8 44 44 H 1.09000 * 110.29949 * 281.83923 * 16 9 8 45 45 H 1.08992 * 109.59144 * 65.93262 * 17 5 4 46 46 H 1.09001 * 109.58475 * 186.35867 * 17 5 4 47 47 H 1.09003 * 109.63384 * 294.86689 * 18 17 5 48 48 H 1.09000 * 109.46243 * 174.74261 * 18 17 5 49 49 H 1.09000 * 109.47041 * 295.00253 * 21 19 2 50 50 H 1.09003 * 109.47064 * 54.99983 * 21 19 2 51 51 H 0.96998 * 120.00094 * 0.02562 * 22 21 19 52 52 H 0.97000 * 119.99594 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2499 5 7 3.5046 -0.8281 -1.1703 6 6 4.2806 -0.3849 -2.1792 7 8 3.7780 0.1916 -3.1249 8 6 5.7361 -0.5985 -2.1365 9 6 6.6990 0.3192 -1.7655 10 6 7.9201 -0.3447 -1.8871 11 7 7.6695 -1.5629 -2.3004 12 7 6.4076 -1.7450 -2.4561 13 6 5.7836 -2.9912 -2.9077 14 6 9.0451 0.5921 -1.4944 15 6 8.3624 1.7380 -0.7172 16 6 6.9283 1.7321 -1.2893 17 6 4.1056 -1.4307 0.0273 18 6 3.5715 -0.6943 1.2653 19 6 2.0414 -0.7230 1.2481 20 1 1.6979 -1.7573 1.2350 21 6 1.5044 -0.0236 2.4984 22 7 1.8945 -0.7835 3.6886 23 6 1.5240 -0.3457 4.9321 24 1 0.9440 0.5594 5.0354 25 6 1.8932 -1.0660 6.0599 26 7 2.5997 -2.1694 5.9339 27 14 1.3886 -0.4686 7.7563 28 1 -0.0929 -0.4072 7.8390 29 1 1.9037 -1.4073 8.7852 30 1 1.9541 0.8838 7.9933 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5149 0.8894 33 1 -0.3634 0.5129 -0.8905 34 1 1.7632 -0.1575 -2.1391 35 1 1.6058 -1.7213 -1.3009 36 1 5.7838 -3.0236 -3.9972 37 1 6.3453 -3.8405 -2.5188 38 1 4.7574 -3.0366 -2.5430 39 1 9.5398 0.9813 -2.3842 40 1 9.7637 0.0781 -0.8559 41 1 8.8554 2.6891 -0.9184 42 1 8.3528 1.5279 0.3524 43 1 6.2098 1.9904 -0.5115 44 1 6.8510 2.4296 -2.1234 45 1 3.8350 -2.4851 0.0810 46 1 5.1901 -1.3316 -0.0188 47 1 3.9161 0.3398 1.2534 48 1 3.9345 -1.1884 2.1665 49 1 1.9186 0.9829 2.5579 50 1 0.4172 0.0337 2.4440 51 1 2.4158 -1.5962 3.5958 52 1 2.8580 -2.6725 6.7220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185482835.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:20 Heat of formation + Delta-G solvation = 36.602665 kcal Electronic energy + Delta-G solvation = -31663.711653 eV Core-core repulsion = 27664.170745 eV Total energy + Delta-G solvation = -3999.540907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.78901 -41.29203 -39.26059 -37.88927 -36.62052 -35.10854 -33.53416 -33.17283 -32.07823 -31.83697 -28.75621 -28.37415 -27.77242 -27.28654 -25.66821 -24.28502 -23.42921 -22.71678 -22.07301 -21.38208 -20.90065 -19.79287 -19.14352 -18.44193 -17.86297 -17.07219 -16.83951 -16.76136 -16.26732 -15.93194 -15.73093 -15.55609 -15.45422 -15.21682 -14.87839 -14.49364 -14.41073 -14.03368 -13.95142 -13.87599 -13.75657 -13.66833 -13.50634 -13.17247 -12.96170 -12.93387 -12.81870 -12.74419 -12.68299 -12.23334 -12.07953 -12.01964 -11.88947 -11.83188 -11.66642 -11.62450 -11.44848 -11.27291 -11.21849 -10.87866 -10.06543 -9.85337 -9.58554 -8.95398 -7.93678 -5.21138 0.52628 0.95326 1.48087 1.48265 1.50324 1.53170 1.56466 1.92499 2.57213 2.87232 3.14121 3.39846 3.64514 3.68366 3.79020 3.86000 3.87678 3.93348 4.15780 4.18246 4.20591 4.21023 4.23598 4.28540 4.31371 4.45552 4.47970 4.57651 4.64348 4.68491 4.69506 4.73843 4.80609 4.81998 4.84984 4.95621 4.99717 5.05725 5.08437 5.09530 5.17812 5.19167 5.23125 5.32095 5.36694 5.44092 5.46740 5.50774 5.57167 5.78544 6.06535 6.29105 6.76304 6.99744 7.36015 8.12506 8.36322 9.29421 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.002935 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.133461 B = 9539.189174 C =10733.051186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.064 0.936 4 C 0.119 3.881 5 N -0.589 5.589 6 C 0.600 3.400 7 O -0.560 6.560 8 C -0.025 4.025 9 C -0.201 4.201 10 C -0.005 4.005 11 N -0.285 5.285 12 N -0.275 5.275 13 C 0.081 3.919 14 C -0.024 4.024 15 C -0.107 4.107 16 C -0.048 4.048 17 C 0.119 3.881 18 C -0.115 4.115 19 C -0.077 4.077 20 H 0.074 0.926 21 C 0.157 3.843 22 N -0.741 5.741 23 C -0.246 4.246 24 H 0.071 0.929 25 C -0.071 4.071 26 N -0.967 5.967 27 Si 0.969 3.031 28 H -0.279 1.279 29 H -0.295 1.295 30 H -0.280 1.280 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.009 0.991 50 H 0.029 0.971 51 H 0.375 0.625 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.016 2.353 -19.785 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.002 4.002 5 N -0.320 5.320 6 C 0.385 3.615 7 O -0.437 6.437 8 C -0.153 4.153 9 C -0.212 4.212 10 C -0.164 4.164 11 N -0.116 5.116 12 N -0.063 5.063 13 C -0.058 4.058 14 C -0.063 4.063 15 C -0.144 4.144 16 C -0.086 4.086 17 C -0.003 4.003 18 C -0.154 4.154 19 C -0.096 4.096 20 H 0.092 0.908 21 C 0.031 3.969 22 N -0.384 5.384 23 C -0.378 4.378 24 H 0.089 0.911 25 C -0.264 4.264 26 N -0.617 5.617 27 Si 0.798 3.202 28 H -0.205 1.205 29 H -0.221 1.221 30 H -0.206 1.206 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.027 0.973 50 H 0.047 0.953 51 H 0.208 0.792 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.065 1.579 -20.519 22.104 hybrid contribution -0.567 0.423 1.353 1.526 sum 7.499 2.002 -19.166 20.678 Atomic orbital electron populations 1.21794 0.92983 1.02850 1.02464 1.21354 0.97152 0.99188 0.93014 0.91702 1.21878 0.77215 1.02290 0.98841 1.48166 1.07533 1.58735 1.17603 1.17147 0.84038 0.78149 0.82165 1.90792 1.74530 1.42828 1.35567 1.20432 0.92733 0.90203 1.11928 1.21619 0.92465 0.99608 1.07536 1.23490 0.98788 0.90580 1.03500 1.72615 0.97717 1.20169 1.21117 1.46006 1.02257 1.10696 1.47368 1.22467 0.99041 0.81740 1.02521 1.20646 0.92856 0.91666 1.01135 1.22400 0.92866 0.99256 0.99909 1.20501 0.98616 0.89210 1.00285 1.21856 0.97857 0.97708 0.82925 1.21841 0.95868 1.00602 0.97051 1.21221 0.94587 0.99993 0.93777 0.90783 1.20880 0.96891 0.93506 0.85656 1.42539 1.65206 1.29156 1.01546 1.19569 1.26902 1.06057 0.85257 0.91056 1.25480 1.01619 0.97973 1.01290 1.69790 1.44233 1.18527 1.29193 0.85281 0.77901 0.77139 0.79867 1.20491 1.22106 1.20613 0.91690 0.92499 0.91058 0.89044 0.88863 0.88432 0.86443 0.88260 0.88240 0.89114 0.87161 0.90508 0.91506 0.89768 0.89189 0.90460 0.92587 0.91591 0.97322 0.95292 0.79231 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.82 71.98 0.63 -2.39 16 2 C -0.09 -2.08 2.41 -10.72 -0.03 -2.11 16 3 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.12 2.58 5.72 86.36 0.49 3.07 16 5 N -0.59 -14.12 2.97 -822.24 -2.44 -16.55 16 6 C 0.60 16.68 6.89 86.59 0.60 17.28 16 7 O -0.56 -18.81 16.52 -4.10 -0.07 -18.88 16 8 C -0.03 -0.68 4.66 40.70 0.19 -0.49 16 9 C -0.20 -5.23 7.02 -19.54 -0.14 -5.37 16 10 C 0.00 -0.12 8.14 43.26 0.35 0.23 16 11 N -0.29 -7.49 11.91 -46.79 -0.56 -8.05 16 12 N -0.27 -6.60 3.75 -356.24 -1.34 -7.93 16 13 C 0.08 1.24 11.22 127.77 1.43 2.67 16 14 C -0.02 -0.39 6.79 30.59 0.21 -0.18 16 15 C -0.11 -1.54 7.06 31.54 0.22 -1.31 16 16 C -0.05 -0.98 6.76 30.37 0.21 -0.77 16 17 C 0.12 2.83 6.35 86.51 0.55 3.38 16 18 C -0.12 -3.37 5.26 30.82 0.16 -3.21 16 19 C -0.08 -2.25 1.73 -10.77 -0.02 -2.27 16 20 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 21 C 0.16 6.00 5.41 86.38 0.47 6.47 16 22 N -0.74 -36.46 5.32 -343.44 -1.83 -38.28 16 23 C -0.25 -13.56 9.99 84.03 0.84 -12.72 16 24 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 25 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 26 N -0.97 -57.91 13.06 21.65 0.28 -57.63 16 27 Si 0.97 45.58 29.55 68.60 2.03 47.60 16 28 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 29 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 30 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.36 6.31 -2.38 -0.02 1.34 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.09 2.09 6.99 -2.39 -0.02 2.07 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.34 7.66 -2.39 -0.02 1.32 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.08 1.94 6.38 -2.39 -0.02 1.93 16 47 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.07 2.28 7.15 -2.39 -0.02 2.26 16 49 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.03 1.11 6.15 -2.39 -0.01 1.09 16 51 H 0.38 19.38 6.84 -92.71 -0.63 18.74 16 52 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -72.77 407.98 3.01 -69.76 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.28 Total: 31.24 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 6.64 Total: -1.28 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -5.88 Total: -128.45 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.07 Total: -18.88 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -72.77 3.01 -69.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185482835.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.365 kcal (2) G-P(sol) polarization free energy of solvation -72.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds