Wall clock time and date at job start Wed Apr 1 2020 04:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.52423 * 2 1 4 4 C 1.53191 * 109.49749 * 120.07893 * 2 1 3 5 5 N 1.46926 * 108.77636 * 65.31702 * 4 2 1 6 6 C 1.34778 * 120.63189 * 233.63465 * 5 4 2 7 7 O 1.21604 * 120.00015 * 356.06375 * 6 5 4 8 8 C 1.47427 * 119.99992 * 176.07224 * 6 5 4 9 9 C 1.39973 * 120.60923 * 53.27715 * 8 6 5 10 10 C 1.38338 * 118.36827 * 180.02562 * 9 8 6 11 11 C 1.38375 * 119.50450 * 359.97438 * 10 9 8 12 12 N 1.31844 * 121.21959 * 0.02562 * 11 10 9 13 13 C 1.32427 * 121.77668 * 359.69326 * 12 11 10 14 14 N 1.38266 * 119.82420 * 180.31682 * 13 12 11 15 15 C 1.46899 * 110.99958 * 304.54115 * 14 13 12 16 16 C 1.46893 * 111.00384 * 68.50271 * 14 13 12 17 17 C 1.46925 * 118.73585 * 53.60642 * 5 4 2 18 18 C 1.53185 * 108.77707 * 306.39098 * 17 5 4 19 19 C 1.53037 * 109.49877 * 239.91890 * 2 1 3 20 20 H 1.09004 * 109.46104 * 181.39436 * 19 2 1 21 21 C 1.52994 * 109.44974 * 61.42589 * 19 2 1 22 22 N 1.46500 * 109.47150 * 174.96257 * 21 19 2 23 23 C 1.36938 * 120.00020 * 179.97438 * 22 21 19 24 24 H 1.07998 * 120.00162 * 0.02562 * 23 22 21 25 25 C 1.38819 * 119.99873 * 180.02562 * 23 22 21 26 26 N 1.31611 * 120.00184 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99943 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47111 * 60.00136 * 27 25 23 29 29 H 1.48489 * 109.47288 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47211 * 300.00444 * 27 25 23 31 31 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47099 * 300.08639 * 1 2 3 33 33 H 1.08998 * 109.46949 * 60.07994 * 1 2 3 34 34 H 1.09006 * 109.58443 * 305.53259 * 4 2 1 35 35 H 1.08998 * 109.58717 * 185.10557 * 4 2 1 36 36 H 1.07994 * 120.81622 * 359.97438 * 9 8 6 37 37 H 1.08001 * 120.24674 * 179.97438 * 10 9 8 38 38 H 1.08007 * 119.38511 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.46831 * 60.00853 * 15 14 13 40 40 H 1.09005 * 109.46978 * 180.02562 * 15 14 13 41 41 H 1.08991 * 109.47512 * 300.00392 * 15 14 13 42 42 H 1.09004 * 109.47440 * 54.99949 * 16 14 13 43 43 H 1.08995 * 109.47562 * 175.00646 * 16 14 13 44 44 H 1.09003 * 109.46690 * 295.00931 * 16 14 13 45 45 H 1.09002 * 109.58520 * 186.60632 * 17 5 4 46 46 H 1.09002 * 109.70450 * 66.25330 * 17 5 4 47 47 H 1.08991 * 109.50116 * 294.68300 * 18 17 5 48 48 H 1.09003 * 109.52489 * 174.59911 * 18 17 5 49 49 H 1.08995 * 109.47737 * 294.96846 * 21 19 2 50 50 H 1.09001 * 109.47074 * 54.96658 * 21 19 2 51 51 H 0.97002 * 120.00215 * 0.02562 * 22 21 19 52 52 H 0.97003 * 120.00503 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6516 -2.1381 1.1697 6 6 0.9740 -2.7218 2.1780 7 8 0.7419 -2.0980 3.1957 8 6 0.5143 -4.1164 2.0471 9 6 1.4125 -5.1337 1.7044 10 6 0.9311 -6.4259 1.5937 11 6 -0.4106 -6.6752 1.8227 12 7 -1.2410 -5.7032 2.1447 13 6 -0.8326 -4.4497 2.2695 14 7 -1.7372 -3.4628 2.6152 15 6 -2.8704 -3.4366 1.6807 16 6 -2.1997 -3.6338 3.9989 17 6 2.0140 -2.9039 -0.0307 18 6 1.5030 -2.1558 -1.2659 19 6 2.0408 -0.7231 -1.2483 20 1 3.1306 -0.7444 -1.2352 21 6 1.5605 0.0171 -2.4982 22 7 2.1471 -0.6031 -3.6887 23 6 1.8580 -0.1073 -4.9320 24 1 1.1979 0.7412 -5.0349 25 6 2.4135 -0.6953 -6.0601 26 7 3.2176 -1.7297 -5.9348 27 14 2.0198 -0.0185 -7.7561 28 1 2.4575 1.3981 -7.8376 29 1 2.7322 -0.8172 -8.7854 30 1 0.5561 -0.0987 -7.9935 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5152 0.8892 33 1 -0.3633 0.5126 -0.8907 34 1 1.6006 -0.2730 2.1389 35 1 3.1275 -0.6462 1.2981 36 1 2.4556 -4.9151 1.5298 37 1 1.5975 -7.2340 1.3305 38 1 -0.7844 -7.6848 1.7354 39 1 -3.3798 -4.4001 1.7004 40 1 -3.5663 -2.6512 1.9755 41 1 -2.5057 -3.2389 0.6728 42 1 -1.3397 -3.6684 4.6678 43 1 -2.8406 -2.7962 4.2740 44 1 -2.7618 -4.5640 4.0817 45 1 1.5554 -3.8918 0.0138 46 1 3.0977 -3.0065 -0.0879 47 1 0.4134 -2.1355 -1.2540 48 1 1.8477 -2.6626 -2.1673 49 1 0.4735 -0.0381 -2.5579 50 1 1.8687 1.0611 -2.4431 51 1 2.7398 -1.3655 -3.5964 52 1 3.6055 -2.1409 -6.7231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185680897.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:54 Heat of formation + Delta-G solvation = 32.937552 kcal Electronic energy + Delta-G solvation = -32002.894538 eV Core-core repulsion = 28003.194700 eV Total energy + Delta-G solvation = -3999.699838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.25543 -39.85149 -37.84878 -37.14327 -34.92183 -33.68940 -32.58238 -31.65324 -30.83349 -30.29587 -27.78606 -27.03479 -26.86916 -25.30318 -24.62147 -23.45724 -22.99959 -21.88705 -21.40738 -20.20489 -18.42380 -17.60570 -17.38219 -17.05878 -16.91305 -16.02574 -15.51521 -15.27886 -15.15822 -14.92291 -14.41970 -14.19242 -14.12910 -13.90117 -13.78771 -13.55973 -13.44990 -13.30927 -12.85085 -12.81690 -12.46727 -12.44151 -12.35616 -12.19144 -12.12269 -11.88575 -11.51955 -11.35710 -11.02912 -10.90457 -10.74681 -10.37764 -10.28674 -10.27261 -10.13907 -10.04985 -9.97013 -9.63040 -9.61864 -9.26172 -8.85151 -8.79671 -8.51378 -6.90205 -5.76703 -3.04291 0.52590 0.82756 2.66203 2.97667 3.38901 3.43789 3.43889 3.48354 3.49193 4.10575 4.40400 4.49941 4.59151 4.73906 4.78121 4.86087 4.96277 5.06246 5.10470 5.15534 5.18978 5.19291 5.29278 5.34137 5.41677 5.48841 5.55385 5.62885 5.65371 5.70695 5.72264 5.72902 5.79449 5.84955 5.89336 5.92989 6.06381 6.09270 6.12566 6.26004 6.34283 6.42999 6.50723 6.54215 6.57932 6.69763 6.83982 6.97047 6.99814 7.39324 7.55470 7.70184 8.19155 8.42946 9.53984 10.12709 10.47334 11.46310 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.002817 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.074996 B = 9938.291748 C =10472.990405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.081 0.919 4 C 0.120 3.880 5 N -0.600 5.600 6 C 0.577 3.423 7 O -0.523 6.523 8 C -0.147 4.147 9 C -0.044 4.044 10 C -0.180 4.180 11 C 0.128 3.872 12 N -0.514 5.514 13 C 0.337 3.663 14 N -0.489 5.489 15 C 0.028 3.972 16 C 0.039 3.961 17 C 0.099 3.901 18 C -0.126 4.126 19 C -0.088 4.088 20 H 0.071 0.929 21 C 0.158 3.842 22 N -0.732 5.732 23 C -0.237 4.237 24 H 0.068 0.932 25 C -0.014 4.014 26 N -0.935 5.935 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.159 0.841 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.037 0.963 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.021 0.979 50 H 0.017 0.983 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -8.486 19.989 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.099 0.901 4 C -0.002 4.002 5 N -0.333 5.333 6 C 0.364 3.636 7 O -0.399 6.399 8 C -0.154 4.154 9 C -0.070 4.070 10 C -0.200 4.200 11 C -0.032 4.032 12 N -0.226 5.226 13 C 0.108 3.892 14 N -0.211 5.211 15 C -0.119 4.119 16 C -0.108 4.108 17 C -0.023 4.023 18 C -0.164 4.164 19 C -0.107 4.107 20 H 0.089 0.911 21 C 0.031 3.969 22 N -0.376 5.376 23 C -0.369 4.369 24 H 0.086 0.914 25 C -0.210 4.210 26 N -0.584 5.584 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.177 0.823 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.039 0.961 50 H 0.035 0.965 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.828 -7.750 20.526 22.978 hybrid contribution 0.536 -0.565 -1.328 1.540 sum -6.292 -8.315 19.197 21.846 Atomic orbital electron populations 1.21835 0.94783 1.02045 1.01328 1.21474 0.96773 0.99393 0.94153 0.90059 1.21673 0.99292 0.79911 0.99281 1.47975 1.55702 1.11675 1.17946 1.17680 0.77263 0.85426 0.83277 1.90758 1.55968 1.64261 1.28865 1.20652 0.94348 0.95354 1.05073 1.21798 1.00091 0.92067 0.93080 1.22092 0.97421 0.97503 1.02948 1.22741 0.89818 0.98048 0.92551 1.67825 1.39605 1.00765 1.14379 1.19680 0.90212 0.87168 0.92095 1.59831 1.15737 1.41102 1.04454 1.22412 0.91915 1.01482 0.96044 1.22325 1.00634 1.00789 0.87043 1.22049 1.00311 0.95323 0.84649 1.21948 1.01356 0.96075 0.97014 1.21297 1.00180 0.94613 0.94569 0.91077 1.20711 0.95896 0.94639 0.85654 1.42374 1.56812 1.37575 1.00850 1.19191 1.22987 1.10803 0.83883 0.91358 1.24708 1.00126 0.98398 0.97759 1.69635 1.35755 1.24390 1.28627 0.86283 0.77641 0.78074 0.84300 1.21313 1.21719 1.21326 0.92540 0.93286 0.92160 0.89076 0.91566 0.83757 0.83837 0.82345 0.93734 0.90551 0.91358 0.91091 0.90507 0.94480 0.90067 0.91025 0.91463 0.89547 0.96111 0.96501 0.78338 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.38 37.16 0.31 -1.61 16 2 C -0.10 -1.29 2.72 -90.50 -0.25 -1.53 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.49 5.82 -3.71 -0.02 1.47 16 5 N -0.60 -7.59 2.41 -174.04 -0.42 -8.01 16 6 C 0.58 8.05 6.86 -12.52 -0.09 7.97 16 7 O -0.52 -8.71 16.09 5.27 0.08 -8.63 16 8 C -0.15 -1.82 4.93 -104.65 -0.52 -2.34 16 9 C -0.04 -0.42 7.54 -38.90 -0.29 -0.71 16 10 C -0.18 -1.40 10.09 -39.49 -0.40 -1.80 16 11 C 0.13 1.12 11.16 -17.50 -0.20 0.93 16 12 N -0.51 -5.94 9.57 -12.20 -0.12 -6.06 16 13 C 0.34 4.27 5.32 -155.19 -0.83 3.44 16 14 N -0.49 -6.12 4.05 -188.75 -0.76 -6.88 16 15 C 0.03 0.31 9.39 60.06 0.56 0.87 16 16 C 0.04 0.42 9.47 60.06 0.57 0.98 16 17 C 0.10 1.18 5.53 -3.71 -0.02 1.16 16 18 C -0.13 -1.84 4.91 -26.61 -0.13 -1.97 16 19 C -0.09 -1.34 1.96 -90.58 -0.18 -1.52 16 20 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 21 C 0.16 3.10 5.18 -4.04 -0.02 3.08 16 22 N -0.73 -18.04 5.32 -59.91 -0.32 -18.36 16 23 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 26 N -0.94 -27.80 13.06 55.49 0.72 -27.08 16 27 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 31 H 0.06 0.82 5.97 -51.93 -0.31 0.51 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 34 H 0.09 1.20 7.03 -51.93 -0.36 0.83 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.14 1.11 7.36 -52.49 -0.39 0.72 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.04 0.47 7.75 -51.93 -0.40 0.07 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.38 8.11 -51.93 -0.42 -0.05 16 45 H 0.08 0.89 4.70 -51.93 -0.24 0.65 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 1.04 6.33 -51.93 -0.33 0.71 16 48 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 49 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 50 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.38 9.79 6.85 -40.82 -0.28 9.51 16 52 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 404.33 15.07 6.09 6.09 Total: -1.00 -33.22 404.33 -9.89 -43.11 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.42 Total: 7.36 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.73 Total: 1.18 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -0.90 Total: -66.39 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.22 -9.89 -43.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185680897.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.051 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds