Wall clock time and date at job start Wed Apr 1 2020 04:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.52423 * 2 1 4 4 C 1.53191 * 109.49749 * 120.07893 * 2 1 3 5 5 N 1.46926 * 108.77636 * 65.31702 * 4 2 1 6 6 C 1.34778 * 120.63189 * 233.63465 * 5 4 2 7 7 O 1.21604 * 120.00015 * 356.06375 * 6 5 4 8 8 C 1.47427 * 119.99992 * 176.07224 * 6 5 4 9 9 C 1.39973 * 120.60923 * 53.27715 * 8 6 5 10 10 C 1.38338 * 118.36827 * 180.02562 * 9 8 6 11 11 C 1.38375 * 119.50450 * 359.97438 * 10 9 8 12 12 N 1.31844 * 121.21959 * 0.02562 * 11 10 9 13 13 C 1.32427 * 121.77668 * 359.69326 * 12 11 10 14 14 N 1.38266 * 119.82420 * 180.31682 * 13 12 11 15 15 C 1.46899 * 110.99958 * 304.54115 * 14 13 12 16 16 C 1.46893 * 111.00384 * 68.50271 * 14 13 12 17 17 C 1.46925 * 118.73585 * 53.60642 * 5 4 2 18 18 C 1.53185 * 108.77707 * 306.39098 * 17 5 4 19 19 C 1.53037 * 109.49877 * 239.91890 * 2 1 3 20 20 H 1.09004 * 109.46104 * 181.39436 * 19 2 1 21 21 C 1.52994 * 109.44974 * 61.42589 * 19 2 1 22 22 N 1.46500 * 109.47150 * 174.96257 * 21 19 2 23 23 C 1.36938 * 120.00020 * 179.97438 * 22 21 19 24 24 H 1.07998 * 120.00162 * 0.02562 * 23 22 21 25 25 C 1.38819 * 119.99873 * 180.02562 * 23 22 21 26 26 N 1.31611 * 120.00184 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99943 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47111 * 60.00136 * 27 25 23 29 29 H 1.48489 * 109.47288 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47211 * 300.00444 * 27 25 23 31 31 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47099 * 300.08639 * 1 2 3 33 33 H 1.08998 * 109.46949 * 60.07994 * 1 2 3 34 34 H 1.09006 * 109.58443 * 305.53259 * 4 2 1 35 35 H 1.08998 * 109.58717 * 185.10557 * 4 2 1 36 36 H 1.07994 * 120.81622 * 359.97438 * 9 8 6 37 37 H 1.08001 * 120.24674 * 179.97438 * 10 9 8 38 38 H 1.08007 * 119.38511 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.46831 * 60.00853 * 15 14 13 40 40 H 1.09005 * 109.46978 * 180.02562 * 15 14 13 41 41 H 1.08991 * 109.47512 * 300.00392 * 15 14 13 42 42 H 1.09004 * 109.47440 * 54.99949 * 16 14 13 43 43 H 1.08995 * 109.47562 * 175.00646 * 16 14 13 44 44 H 1.09003 * 109.46690 * 295.00931 * 16 14 13 45 45 H 1.09002 * 109.58520 * 186.60632 * 17 5 4 46 46 H 1.09002 * 109.70450 * 66.25330 * 17 5 4 47 47 H 1.08991 * 109.50116 * 294.68300 * 18 17 5 48 48 H 1.09003 * 109.52489 * 174.59911 * 18 17 5 49 49 H 1.08995 * 109.47737 * 294.96846 * 21 19 2 50 50 H 1.09001 * 109.47074 * 54.96658 * 21 19 2 51 51 H 0.97002 * 120.00215 * 0.02562 * 22 21 19 52 52 H 0.97003 * 120.00503 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6516 -2.1381 1.1697 6 6 0.9740 -2.7218 2.1780 7 8 0.7419 -2.0980 3.1957 8 6 0.5143 -4.1164 2.0471 9 6 1.4125 -5.1337 1.7044 10 6 0.9311 -6.4259 1.5937 11 6 -0.4106 -6.6752 1.8227 12 7 -1.2410 -5.7032 2.1447 13 6 -0.8326 -4.4497 2.2695 14 7 -1.7372 -3.4628 2.6152 15 6 -2.8704 -3.4366 1.6807 16 6 -2.1997 -3.6338 3.9989 17 6 2.0140 -2.9039 -0.0307 18 6 1.5030 -2.1558 -1.2659 19 6 2.0408 -0.7231 -1.2483 20 1 3.1306 -0.7444 -1.2352 21 6 1.5605 0.0171 -2.4982 22 7 2.1471 -0.6031 -3.6887 23 6 1.8580 -0.1073 -4.9320 24 1 1.1979 0.7412 -5.0349 25 6 2.4135 -0.6953 -6.0601 26 7 3.2176 -1.7297 -5.9348 27 14 2.0198 -0.0185 -7.7561 28 1 2.4575 1.3981 -7.8376 29 1 2.7322 -0.8172 -8.7854 30 1 0.5561 -0.0987 -7.9935 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5152 0.8892 33 1 -0.3633 0.5126 -0.8907 34 1 1.6006 -0.2730 2.1389 35 1 3.1275 -0.6462 1.2981 36 1 2.4556 -4.9151 1.5298 37 1 1.5975 -7.2340 1.3305 38 1 -0.7844 -7.6848 1.7354 39 1 -3.3798 -4.4001 1.7004 40 1 -3.5663 -2.6512 1.9755 41 1 -2.5057 -3.2389 0.6728 42 1 -1.3397 -3.6684 4.6678 43 1 -2.8406 -2.7962 4.2740 44 1 -2.7618 -4.5640 4.0817 45 1 1.5554 -3.8918 0.0138 46 1 3.0977 -3.0065 -0.0879 47 1 0.4134 -2.1355 -1.2540 48 1 1.8477 -2.6626 -2.1673 49 1 0.4735 -0.0381 -2.5579 50 1 1.8687 1.0611 -2.4431 51 1 2.7398 -1.3655 -3.5964 52 1 3.6055 -2.1409 -6.7231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185680897.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:52 Heat of formation + Delta-G solvation = 12.709858 kcal Electronic energy + Delta-G solvation = -32003.771677 eV Core-core repulsion = 28003.194700 eV Total energy + Delta-G solvation = -4000.576977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.13246 -40.85531 -39.03140 -37.95591 -36.51460 -34.99458 -33.73450 -32.91012 -31.94152 -31.61243 -28.63701 -28.48672 -27.99758 -26.13009 -25.82806 -24.97486 -24.12790 -22.97510 -22.57953 -21.26025 -19.70333 -19.01973 -18.38415 -18.16357 -17.89043 -17.05204 -16.75546 -16.46229 -16.14510 -15.94808 -15.81462 -15.42460 -15.31286 -15.14015 -15.03001 -14.68120 -14.47332 -14.29015 -14.22398 -13.91792 -13.62046 -13.56114 -13.42560 -13.21873 -13.00131 -12.96154 -12.78524 -12.76876 -12.66211 -12.46416 -12.22152 -12.02295 -11.89581 -11.55675 -11.39901 -11.22208 -11.15215 -10.91239 -10.83718 -10.56878 -10.04238 -9.66547 -9.55698 -8.94877 -7.93105 -5.20338 -0.25125 0.10182 1.48110 1.50234 1.56345 1.64986 2.02303 2.57460 2.59731 2.65444 3.30926 3.40223 3.56907 3.73709 3.77291 3.85956 3.88374 3.99360 4.04448 4.11398 4.24297 4.31886 4.32840 4.36077 4.40104 4.44820 4.50766 4.52106 4.59923 4.67949 4.73554 4.79102 4.84826 4.85242 4.86769 4.86924 4.95124 5.00453 5.04805 5.09671 5.18470 5.21157 5.25890 5.34633 5.41547 5.50718 5.55167 5.65022 5.74669 6.16234 6.29930 6.38213 6.79559 7.15901 7.36769 8.13499 8.37971 9.30024 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.002817 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.074996 B = 9938.291748 C =10472.990405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.093 0.907 4 C 0.123 3.877 5 N -0.597 5.597 6 C 0.578 3.422 7 O -0.557 6.557 8 C -0.173 4.173 9 C -0.046 4.046 10 C -0.166 4.166 11 C 0.123 3.877 12 N -0.533 5.533 13 C 0.318 3.682 14 N -0.507 5.507 15 C 0.035 3.965 16 C 0.045 3.955 17 C 0.108 3.892 18 C -0.118 4.118 19 C -0.076 4.076 20 H 0.072 0.928 21 C 0.159 3.841 22 N -0.741 5.741 23 C -0.246 4.246 24 H 0.070 0.930 25 C -0.071 4.071 26 N -0.966 5.966 27 Si 0.969 3.031 28 H -0.280 1.280 29 H -0.294 1.294 30 H -0.280 1.280 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.164 0.836 37 H 0.181 0.819 38 H 0.190 0.810 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.040 0.960 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.016 0.984 50 H 0.015 0.985 51 H 0.376 0.624 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 -9.382 20.277 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 H 0.111 0.889 4 C 0.001 3.999 5 N -0.329 5.329 6 C 0.366 3.634 7 O -0.435 6.435 8 C -0.180 4.180 9 C -0.072 4.072 10 C -0.186 4.186 11 C -0.036 4.036 12 N -0.245 5.245 13 C 0.090 3.910 14 N -0.230 5.230 15 C -0.112 4.112 16 C -0.101 4.101 17 C -0.014 4.014 18 C -0.157 4.157 19 C -0.095 4.095 20 H 0.090 0.910 21 C 0.033 3.967 22 N -0.384 5.384 23 C -0.378 4.378 24 H 0.088 0.912 25 C -0.264 4.264 26 N -0.616 5.616 27 Si 0.798 3.202 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.207 1.207 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.181 0.819 37 H 0.199 0.801 38 H 0.207 0.793 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.034 0.966 50 H 0.033 0.967 51 H 0.209 0.791 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.461 -8.623 20.826 23.449 hybrid contribution 0.386 -0.324 -1.397 1.485 sum -6.075 -8.947 19.429 22.236 Atomic orbital electron populations 1.21752 0.95140 1.01199 1.01193 1.21417 0.96309 0.99892 0.93339 0.88885 1.21671 1.00252 0.79714 0.98279 1.47997 1.55329 1.11782 1.17812 1.17945 0.76568 0.86039 0.82826 1.90730 1.57264 1.65347 1.30197 1.20668 0.94978 0.95087 1.07227 1.22094 1.00569 0.92161 0.92405 1.22494 0.97481 0.97705 1.00883 1.23393 0.90282 0.98753 0.91133 1.67841 1.40592 1.00814 1.15268 1.19782 0.90426 0.87710 0.93090 1.59830 1.16224 1.41873 1.05097 1.22351 0.91764 1.01873 0.95214 1.22266 1.00141 1.01419 0.86306 1.22027 1.01363 0.95210 0.82819 1.21810 1.00520 0.95782 0.97556 1.21173 1.00107 0.94782 0.93475 0.90968 1.20827 0.95291 0.94733 0.85857 1.42538 1.56847 1.37527 1.01502 1.19561 1.22369 1.10561 0.85317 0.91211 1.25470 1.00604 0.99055 1.01236 1.69777 1.37002 1.25678 1.29190 0.85287 0.77503 0.77509 0.79922 1.20586 1.21997 1.20662 0.93743 0.92606 0.93002 0.89663 0.89794 0.81895 0.80139 0.79277 0.93747 0.89329 0.92675 0.92473 0.89418 0.94133 0.88868 0.89120 0.92690 0.91765 0.96618 0.96661 0.79120 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.38 71.98 0.60 -3.02 16 2 C -0.09 -2.26 2.72 -10.72 -0.03 -2.29 16 3 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.12 2.88 5.82 86.36 0.50 3.38 16 5 N -0.60 -14.45 2.41 -822.79 -1.98 -16.43 16 6 C 0.58 15.86 6.86 86.66 0.59 16.45 16 7 O -0.56 -18.67 16.09 -4.04 -0.07 -18.74 16 8 C -0.17 -4.13 4.93 -19.88 -0.10 -4.23 16 9 C -0.05 -0.77 7.54 22.71 0.17 -0.60 16 10 C -0.17 -2.06 10.09 22.33 0.23 -1.84 16 11 C 0.12 1.87 11.16 84.72 0.95 2.81 16 12 N -0.53 -11.78 9.57 -192.51 -1.84 -13.62 16 13 C 0.32 7.96 5.32 133.65 0.71 8.67 16 14 N -0.51 -12.83 4.05 -751.08 -3.04 -15.87 16 15 C 0.03 0.77 9.39 127.69 1.20 1.97 16 16 C 0.05 0.98 9.47 127.69 1.21 2.19 16 17 C 0.11 2.40 5.53 86.36 0.48 2.88 16 18 C -0.12 -3.42 4.91 30.67 0.15 -3.27 16 19 C -0.08 -2.29 1.96 -10.77 -0.02 -2.31 16 20 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 21 C 0.16 6.23 5.18 86.38 0.45 6.68 16 22 N -0.74 -36.78 5.32 -343.46 -1.83 -38.61 16 23 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 24 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 25 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 26 N -0.97 -57.79 13.06 21.65 0.28 -57.50 16 27 Si 0.97 45.79 29.55 68.60 2.03 47.82 16 28 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 29 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 30 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 31 H 0.04 1.29 5.97 -2.39 -0.01 1.28 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.45 6.58 -2.39 -0.02 1.43 16 34 H 0.08 2.17 7.03 -2.38 -0.02 2.15 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.16 2.02 7.36 -2.91 -0.02 1.99 16 37 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.19 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.04 0.95 7.75 -2.39 -0.02 0.93 16 40 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.37 8.11 -2.38 -0.02 1.36 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.04 0.82 8.11 -2.39 -0.02 0.80 16 45 H 0.09 1.89 4.70 -2.39 -0.01 1.88 16 46 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.05 1.72 6.33 -2.39 -0.02 1.70 16 48 H 0.06 2.17 7.15 -2.39 -0.02 2.15 16 49 H 0.02 0.64 6.74 -2.39 -0.02 0.63 16 50 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.38 19.47 6.85 -92.71 -0.63 18.83 16 52 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -72.27 404.33 2.23 -70.04 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.29 Total: 31.87 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 8.40 Total: 11.05 kcal Atomic # 7 Polarization: -133.62 SS G_CDS: -8.41 Total: -142.03 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.07 Total: -18.74 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -72.27 2.23 -70.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185680897.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.746 kcal (2) G-P(sol) polarization free energy of solvation -72.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds