Wall clock time and date at job start Wed Apr 1 2020 04:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49729 * 2 1 4 4 C 1.53198 * 109.49895 * 120.06022 * 2 1 3 5 5 N 1.46928 * 108.89302 * 174.51444 * 4 2 1 6 6 C 1.34768 * 120.62851 * 126.46549 * 5 4 2 7 7 O 1.21609 * 120.00183 * 354.16426 * 6 5 4 8 8 C 1.47428 * 119.99980 * 174.17178 * 6 5 4 9 9 C 1.39981 * 120.60592 * 306.29103 * 8 6 5 10 10 C 1.38327 * 118.36898 * 179.75926 * 9 8 6 11 11 C 1.38377 * 119.50759 * 0.52557 * 10 9 8 12 12 N 1.31852 * 121.21670 * 359.71778 * 11 10 9 13 13 C 1.32424 * 121.77309 * 0.02562 * 12 11 10 14 14 N 1.38268 * 119.82411 * 179.97438 * 13 12 11 15 15 C 1.46897 * 111.00220 * 304.90491 * 14 13 12 16 16 C 1.46901 * 110.99751 * 68.85672 * 14 13 12 17 17 C 1.46959 * 118.71394 * 306.64389 * 5 4 2 18 18 C 1.53184 * 108.89264 * 53.35537 * 17 5 4 19 19 C 1.53039 * 109.31301 * 305.44295 * 18 17 5 20 20 H 1.08997 * 109.45983 * 301.34253 * 19 18 17 21 21 C 1.53000 * 109.46284 * 181.38132 * 19 18 17 22 22 N 1.46506 * 109.46960 * 64.93046 * 21 19 18 23 23 C 1.36931 * 119.99888 * 180.02562 * 22 21 19 24 24 H 1.08001 * 120.00634 * 0.02562 * 23 22 21 25 25 C 1.38814 * 119.99905 * 180.02562 * 23 22 21 26 26 N 1.31622 * 120.00164 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00093 * 359.97438 * 25 23 22 28 28 H 1.48504 * 109.46803 * 90.00224 * 27 25 23 29 29 H 1.48495 * 109.47556 * 210.00537 * 27 25 23 30 30 H 1.48502 * 109.47005 * 330.00739 * 27 25 23 31 31 H 1.08997 * 109.46934 * 299.93897 * 1 2 3 32 32 H 1.08996 * 109.46904 * 59.93972 * 1 2 3 33 33 H 1.08996 * 109.47241 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.58612 * 294.37728 * 4 2 1 35 35 H 1.08998 * 109.58476 * 54.65711 * 4 2 1 36 36 H 1.08001 * 120.81260 * 0.03011 * 9 8 6 37 37 H 1.08007 * 120.24975 * 180.26245 * 10 9 8 38 38 H 1.08004 * 119.39392 * 179.74088 * 11 10 9 39 39 H 1.08995 * 109.47491 * 59.99881 * 15 14 13 40 40 H 1.09004 * 109.47123 * 180.02562 * 15 14 13 41 41 H 1.09004 * 109.46816 * 299.99386 * 15 14 13 42 42 H 1.09002 * 109.47493 * 55.00098 * 16 14 13 43 43 H 1.08999 * 109.47097 * 175.00152 * 16 14 13 44 44 H 1.09000 * 109.47561 * 295.00291 * 16 14 13 45 45 H 1.09003 * 109.46516 * 293.57147 * 17 5 4 46 46 H 1.08995 * 109.70974 * 173.29152 * 17 5 4 47 47 H 1.08995 * 109.50349 * 185.49222 * 18 17 5 48 48 H 1.09004 * 109.52257 * 65.41065 * 18 17 5 49 49 H 1.09000 * 109.47516 * 184.93431 * 21 19 18 50 50 H 1.08996 * 109.47439 * 304.93557 * 21 19 18 51 51 H 0.96999 * 119.99594 * 0.02562 * 22 21 19 52 52 H 0.97004 * 119.99769 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2499 5 7 3.5046 -0.8317 1.1717 6 6 4.2806 -0.3905 2.1813 7 8 3.7802 0.1981 3.1205 8 6 5.7363 -0.6212 2.1472 9 6 6.2495 -1.9111 1.9677 10 6 7.6228 -2.0739 1.9379 11 6 8.4434 -0.9710 2.0956 12 7 7.9408 0.2357 2.2686 13 6 6.6342 0.4488 2.3001 14 7 6.1509 1.7311 2.4845 15 6 6.7028 2.3312 3.7064 16 6 6.4294 2.5721 1.3127 17 6 4.1053 -1.4267 -0.0303 18 6 3.5709 -0.6955 -1.2657 19 6 2.0408 -0.7236 -1.2481 20 1 1.6968 -1.7577 -1.2347 21 6 1.5037 -0.0241 -2.4983 22 7 1.8931 -0.7844 -3.6886 23 6 1.5225 -0.3468 -4.9320 24 1 0.9435 0.5590 -5.0355 25 6 1.8910 -1.0675 -6.0598 26 7 1.5352 -0.6467 -7.2551 27 14 2.8931 -2.6338 -5.8811 28 1 1.9770 -3.7945 -5.7434 29 1 3.7457 -2.8159 -7.0832 30 1 3.7531 -2.5362 -4.6744 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7638 -0.1572 2.1390 35 1 1.6033 -1.7202 1.3000 36 1 5.5892 -2.7578 1.8510 37 1 8.0515 -3.0552 1.7969 38 1 9.5155 -1.1008 2.0762 39 1 7.7893 2.3747 3.6310 40 1 6.3060 3.3391 3.8274 41 1 6.4223 1.7248 4.5676 42 1 6.0261 2.0956 0.4192 43 1 5.9623 3.5478 1.4465 44 1 7.5067 2.6971 1.2029 45 1 3.8375 -2.4819 -0.0859 46 1 5.1898 -1.3268 0.0128 47 1 3.9334 -1.1905 -2.1666 48 1 3.9160 0.3384 -1.2548 49 1 0.4166 0.0337 -2.4437 50 1 1.9184 0.9821 -2.5583 51 1 2.4134 -1.5977 -3.5957 52 1 1.7931 -1.1501 -8.0431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185680900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:03 Heat of formation + Delta-G solvation = 32.328040 kcal Electronic energy + Delta-G solvation = -31783.180895 eV Core-core repulsion = 27783.454626 eV Total energy + Delta-G solvation = -3999.726269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.29015 -39.84565 -37.92854 -37.19975 -35.11999 -33.87204 -32.69445 -32.02263 -30.95599 -30.67707 -27.84403 -27.23568 -26.99722 -25.32733 -24.73339 -23.38628 -22.50312 -21.93188 -21.24543 -20.28252 -19.43862 -17.73270 -17.53408 -17.28940 -17.09334 -16.25850 -15.52412 -15.34532 -15.07732 -14.85584 -14.46378 -14.37382 -14.22231 -14.19692 -13.70388 -13.68083 -13.39693 -13.22175 -13.09005 -12.88744 -12.74436 -12.47811 -12.43236 -12.22669 -11.98878 -11.95373 -11.91213 -11.71751 -11.33776 -10.98297 -10.89510 -10.51241 -10.44939 -10.35328 -10.19465 -10.11210 -10.06912 -9.81590 -9.58836 -9.29501 -8.89842 -8.85845 -8.63182 -7.22392 -5.77764 -3.12729 0.44626 0.75668 2.57028 2.86504 3.32723 3.32941 3.34848 3.35904 3.42332 4.02747 4.32581 4.42483 4.56951 4.65244 4.70282 4.73304 4.80908 4.89661 4.99872 5.04205 5.07937 5.13608 5.21470 5.29235 5.33660 5.36004 5.42806 5.52530 5.56786 5.61926 5.64258 5.65656 5.67560 5.71616 5.74190 5.79061 5.82580 5.91425 5.98798 6.14179 6.19879 6.23700 6.36157 6.40139 6.49490 6.51344 6.74287 6.82401 6.93448 7.28446 7.47901 7.99273 8.09839 8.41494 9.20807 9.93072 10.13258 11.40949 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.003088 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.520401 B = 9066.564511 C = 9935.567833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.120 3.880 5 N -0.605 5.605 6 C 0.576 3.424 7 O -0.516 6.516 8 C -0.148 4.148 9 C -0.042 4.042 10 C -0.180 4.180 11 C 0.128 3.872 12 N -0.513 5.513 13 C 0.337 3.663 14 N -0.489 5.489 15 C 0.035 3.965 16 C 0.030 3.970 17 C 0.105 3.895 18 C -0.127 4.127 19 C -0.092 4.092 20 H 0.071 0.929 21 C 0.161 3.839 22 N -0.755 5.755 23 C -0.241 4.241 24 H 0.089 0.911 25 C 0.003 3.997 26 N -0.935 5.935 27 Si 0.884 3.116 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.041 0.959 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.033 0.967 50 H 0.025 0.975 51 H 0.359 0.641 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.676 -1.683 23.214 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.002 4.002 5 N -0.339 5.339 6 C 0.362 3.638 7 O -0.392 6.392 8 C -0.155 4.155 9 C -0.069 4.069 10 C -0.200 4.200 11 C -0.031 4.031 12 N -0.225 5.225 13 C 0.108 3.892 14 N -0.212 5.212 15 C -0.112 4.112 16 C -0.117 4.117 17 C -0.018 4.018 18 C -0.165 4.165 19 C -0.111 4.111 20 H 0.090 0.910 21 C 0.034 3.966 22 N -0.401 5.401 23 C -0.371 4.371 24 H 0.107 0.893 25 C -0.193 4.193 26 N -0.584 5.584 27 Si 0.715 3.285 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.177 0.823 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.051 0.949 50 H 0.043 0.957 51 H 0.192 0.808 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.337 -0.498 23.707 26.283 hybrid contribution 1.137 -1.890 -0.448 2.250 sum 12.474 -2.388 23.259 26.501 Atomic orbital electron populations 1.21835 0.94229 1.02175 1.02270 1.21436 0.96185 1.00102 0.93830 0.90612 1.21699 0.78278 1.00792 0.99415 1.48029 1.07006 1.61100 1.17752 1.17729 0.85239 0.78304 0.82523 1.90778 1.74264 1.39590 1.34540 1.20647 0.94925 0.93999 1.05902 1.21757 0.95908 0.95987 0.93234 1.22086 0.93802 1.01079 1.03043 1.22755 1.00633 0.87074 0.92651 1.67838 1.14720 1.25615 1.14335 1.19719 0.86381 0.91227 0.91828 1.59870 1.56837 0.99537 1.04931 1.22336 0.98126 1.00003 0.90728 1.22427 1.00173 0.97399 0.91654 1.21906 0.98054 0.97306 0.84549 1.21940 0.96273 1.01419 0.96854 1.21391 0.94513 1.00217 0.95000 0.91031 1.20740 0.97250 0.94101 0.84540 1.42729 1.66082 1.28658 1.02636 1.19069 1.28261 1.07881 0.81936 0.89281 1.24676 1.00773 0.98712 0.95125 1.69704 1.51029 1.40577 0.97040 0.86551 0.80421 0.84762 0.76768 1.21114 1.21780 1.20433 0.92836 0.91195 0.92548 0.88991 0.91522 0.83906 0.83877 0.82310 0.93888 0.90592 0.91323 0.91314 0.90200 0.94054 0.91245 0.90311 0.89995 0.91422 0.94888 0.95736 0.80794 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.82 37.16 0.33 -1.36 16 2 C -0.10 -1.19 2.42 -90.50 -0.22 -1.40 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.41 5.72 -3.71 -0.02 1.38 16 5 N -0.61 -7.30 2.98 -174.01 -0.52 -7.82 16 6 C 0.58 7.79 6.82 -12.52 -0.09 7.71 16 7 O -0.52 -8.55 16.10 5.27 0.08 -8.47 16 8 C -0.15 -1.75 4.63 -104.65 -0.48 -2.23 16 9 C -0.04 -0.37 7.92 -38.90 -0.31 -0.68 16 10 C -0.18 -1.29 10.09 -39.50 -0.40 -1.68 16 11 C 0.13 1.05 11.16 -17.49 -0.20 0.86 16 12 N -0.51 -5.69 9.57 -12.20 -0.12 -5.81 16 13 C 0.34 4.13 5.33 -155.19 -0.83 3.30 16 14 N -0.49 -6.01 4.07 -188.75 -0.77 -6.78 16 15 C 0.03 0.36 9.39 60.06 0.56 0.93 16 16 C 0.03 0.32 9.47 60.07 0.57 0.89 16 17 C 0.10 1.16 5.60 -3.70 -0.02 1.13 16 18 C -0.13 -1.72 5.25 -26.62 -0.14 -1.86 16 19 C -0.09 -1.32 1.73 -90.58 -0.16 -1.47 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 21 C 0.16 2.98 5.41 -4.04 -0.02 2.96 16 22 N -0.76 -17.39 5.12 -59.91 -0.31 -17.70 16 23 C -0.24 -6.77 10.47 -15.06 -0.16 -6.92 16 24 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 25 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 26 N -0.94 -29.28 13.97 55.49 0.78 -28.50 16 27 Si 0.88 21.66 27.74 -169.99 -4.71 16.95 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H -0.28 -6.26 6.52 56.52 0.37 -5.90 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.88 6.30 -51.93 -0.33 0.55 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.14 0.99 7.80 -52.49 -0.41 0.58 16 37 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 38 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.04 0.43 7.74 -51.93 -0.40 0.03 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.79 8.11 -51.93 -0.42 0.36 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.43 8.11 -51.93 -0.42 0.00 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.82 5.41 -51.93 -0.28 0.54 16 47 H 0.08 1.24 7.15 -51.93 -0.37 0.87 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.03 0.62 6.14 -51.93 -0.32 0.31 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.36 7.98 4.71 -40.82 -0.19 7.79 16 52 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 406.51 15.07 6.13 6.13 Total: -1.00 -34.47 406.51 -9.70 -44.17 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.59 Total: 6.30 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.67 Total: 1.52 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.93 Total: -66.60 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.08 Total: -8.47 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.47 -9.70 -44.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185680900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.501 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds