Wall clock time and date at job start Wed Apr 1 2020 04:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49729 * 2 1 4 4 C 1.53198 * 109.49895 * 120.06022 * 2 1 3 5 5 N 1.46928 * 108.89302 * 174.51444 * 4 2 1 6 6 C 1.34768 * 120.62851 * 126.46549 * 5 4 2 7 7 O 1.21609 * 120.00183 * 354.16426 * 6 5 4 8 8 C 1.47428 * 119.99980 * 174.17178 * 6 5 4 9 9 C 1.39981 * 120.60592 * 306.29103 * 8 6 5 10 10 C 1.38327 * 118.36898 * 179.75926 * 9 8 6 11 11 C 1.38377 * 119.50759 * 0.52557 * 10 9 8 12 12 N 1.31852 * 121.21670 * 359.71778 * 11 10 9 13 13 C 1.32424 * 121.77309 * 0.02562 * 12 11 10 14 14 N 1.38268 * 119.82411 * 179.97438 * 13 12 11 15 15 C 1.46897 * 111.00220 * 304.90491 * 14 13 12 16 16 C 1.46901 * 110.99751 * 68.85672 * 14 13 12 17 17 C 1.46959 * 118.71394 * 306.64389 * 5 4 2 18 18 C 1.53184 * 108.89264 * 53.35537 * 17 5 4 19 19 C 1.53039 * 109.31301 * 305.44295 * 18 17 5 20 20 H 1.08997 * 109.45983 * 301.34253 * 19 18 17 21 21 C 1.53000 * 109.46284 * 181.38132 * 19 18 17 22 22 N 1.46506 * 109.46960 * 64.93046 * 21 19 18 23 23 C 1.36931 * 119.99888 * 180.02562 * 22 21 19 24 24 H 1.08001 * 120.00634 * 0.02562 * 23 22 21 25 25 C 1.38814 * 119.99905 * 180.02562 * 23 22 21 26 26 N 1.31622 * 120.00164 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00093 * 359.97438 * 25 23 22 28 28 H 1.48504 * 109.46803 * 90.00224 * 27 25 23 29 29 H 1.48495 * 109.47556 * 210.00537 * 27 25 23 30 30 H 1.48502 * 109.47005 * 330.00739 * 27 25 23 31 31 H 1.08997 * 109.46934 * 299.93897 * 1 2 3 32 32 H 1.08996 * 109.46904 * 59.93972 * 1 2 3 33 33 H 1.08996 * 109.47241 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.58612 * 294.37728 * 4 2 1 35 35 H 1.08998 * 109.58476 * 54.65711 * 4 2 1 36 36 H 1.08001 * 120.81260 * 0.03011 * 9 8 6 37 37 H 1.08007 * 120.24975 * 180.26245 * 10 9 8 38 38 H 1.08004 * 119.39392 * 179.74088 * 11 10 9 39 39 H 1.08995 * 109.47491 * 59.99881 * 15 14 13 40 40 H 1.09004 * 109.47123 * 180.02562 * 15 14 13 41 41 H 1.09004 * 109.46816 * 299.99386 * 15 14 13 42 42 H 1.09002 * 109.47493 * 55.00098 * 16 14 13 43 43 H 1.08999 * 109.47097 * 175.00152 * 16 14 13 44 44 H 1.09000 * 109.47561 * 295.00291 * 16 14 13 45 45 H 1.09003 * 109.46516 * 293.57147 * 17 5 4 46 46 H 1.08995 * 109.70974 * 173.29152 * 17 5 4 47 47 H 1.08995 * 109.50349 * 185.49222 * 18 17 5 48 48 H 1.09004 * 109.52257 * 65.41065 * 18 17 5 49 49 H 1.09000 * 109.47516 * 184.93431 * 21 19 18 50 50 H 1.08996 * 109.47439 * 304.93557 * 21 19 18 51 51 H 0.96999 * 119.99594 * 0.02562 * 22 21 19 52 52 H 0.97004 * 119.99769 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2499 5 7 3.5046 -0.8317 1.1717 6 6 4.2806 -0.3905 2.1813 7 8 3.7802 0.1981 3.1205 8 6 5.7363 -0.6212 2.1472 9 6 6.2495 -1.9111 1.9677 10 6 7.6228 -2.0739 1.9379 11 6 8.4434 -0.9710 2.0956 12 7 7.9408 0.2357 2.2686 13 6 6.6342 0.4488 2.3001 14 7 6.1509 1.7311 2.4845 15 6 6.7028 2.3312 3.7064 16 6 6.4294 2.5721 1.3127 17 6 4.1053 -1.4267 -0.0303 18 6 3.5709 -0.6955 -1.2657 19 6 2.0408 -0.7236 -1.2481 20 1 1.6968 -1.7577 -1.2347 21 6 1.5037 -0.0241 -2.4983 22 7 1.8931 -0.7844 -3.6886 23 6 1.5225 -0.3468 -4.9320 24 1 0.9435 0.5590 -5.0355 25 6 1.8910 -1.0675 -6.0598 26 7 1.5352 -0.6467 -7.2551 27 14 2.8931 -2.6338 -5.8811 28 1 1.9770 -3.7945 -5.7434 29 1 3.7457 -2.8159 -7.0832 30 1 3.7531 -2.5362 -4.6744 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7638 -0.1572 2.1390 35 1 1.6033 -1.7202 1.3000 36 1 5.5892 -2.7578 1.8510 37 1 8.0515 -3.0552 1.7969 38 1 9.5155 -1.1008 2.0762 39 1 7.7893 2.3747 3.6310 40 1 6.3060 3.3391 3.8274 41 1 6.4223 1.7248 4.5676 42 1 6.0261 2.0956 0.4192 43 1 5.9623 3.5478 1.4465 44 1 7.5067 2.6971 1.2029 45 1 3.8375 -2.4819 -0.0859 46 1 5.1898 -1.3268 0.0128 47 1 3.9334 -1.1905 -2.1666 48 1 3.9160 0.3384 -1.2548 49 1 0.4166 0.0337 -2.4437 50 1 1.9184 0.9821 -2.5583 51 1 2.4134 -1.5977 -3.5957 52 1 1.7931 -1.1501 -8.0431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185680900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:02 Heat of formation + Delta-G solvation = 9.847947 kcal Electronic energy + Delta-G solvation = -31784.155705 eV Core-core repulsion = 27783.454626 eV Total energy + Delta-G solvation = -4000.701079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.09424 -40.78612 -39.06566 -37.96709 -36.64960 -35.13289 -33.80253 -33.27751 -32.33638 -31.65239 -28.68705 -28.66246 -27.91241 -26.10577 -25.78756 -24.80035 -23.66639 -22.80543 -22.56837 -21.37310 -20.46064 -19.61347 -18.40503 -18.14155 -17.91292 -17.21731 -16.66100 -16.34941 -16.19805 -15.98992 -15.78914 -15.53525 -15.36720 -15.07126 -14.95251 -14.64432 -14.49657 -14.37745 -14.24410 -13.98510 -13.90462 -13.53174 -13.27395 -13.22731 -13.13910 -13.01335 -12.91500 -12.83988 -12.79883 -12.67487 -12.16494 -11.97831 -11.84235 -11.62102 -11.53251 -11.24103 -11.19382 -10.95278 -10.85581 -10.67481 -10.03512 -9.66599 -9.62040 -9.26248 -8.01162 -5.34749 -0.26691 0.10396 1.37814 1.43877 1.51072 1.61525 1.98164 2.50560 2.58090 2.63833 3.28922 3.30096 3.53362 3.56699 3.71507 3.83886 3.87890 3.95791 3.97578 4.05580 4.09364 4.26901 4.29747 4.32374 4.37302 4.45134 4.49020 4.52021 4.58443 4.61201 4.68289 4.74292 4.79415 4.80756 4.83713 4.85669 4.94658 4.99103 5.04694 5.07779 5.08958 5.21384 5.25480 5.37376 5.41258 5.49846 5.60542 5.70792 5.77307 6.14444 6.22558 6.34526 6.78887 7.09966 7.12819 7.85433 8.06790 9.20766 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.003088 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.520401 B = 9066.564511 C = 9935.567833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.058 0.942 4 C 0.124 3.876 5 N -0.603 5.603 6 C 0.576 3.424 7 O -0.557 6.557 8 C -0.172 4.172 9 C -0.041 4.041 10 C -0.165 4.165 11 C 0.123 3.877 12 N -0.533 5.533 13 C 0.316 3.684 14 N -0.510 5.510 15 C 0.041 3.959 16 C 0.036 3.964 17 C 0.112 3.888 18 C -0.124 4.124 19 C -0.081 4.081 20 H 0.084 0.916 21 C 0.159 3.841 22 N -0.753 5.753 23 C -0.235 4.235 24 H 0.050 0.950 25 C -0.068 4.068 26 N -0.988 5.988 27 Si 0.958 3.042 28 H -0.276 1.276 29 H -0.298 1.298 30 H -0.243 1.243 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.165 0.835 37 H 0.183 0.817 38 H 0.190 0.810 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.051 0.949 49 H 0.032 0.968 50 H 0.010 0.990 51 H 0.368 0.632 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.583 -4.861 24.904 28.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.077 0.923 4 C 0.002 3.998 5 N -0.335 5.335 6 C 0.364 3.636 7 O -0.435 6.435 8 C -0.179 4.179 9 C -0.068 4.068 10 C -0.184 4.184 11 C -0.036 4.036 12 N -0.246 5.246 13 C 0.088 3.912 14 N -0.233 5.233 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.010 4.010 18 C -0.163 4.163 19 C -0.100 4.100 20 H 0.103 0.897 21 C 0.033 3.967 22 N -0.400 5.400 23 C -0.366 4.366 24 H 0.068 0.932 25 C -0.259 4.259 26 N -0.638 5.638 27 Si 0.784 3.216 28 H -0.202 1.202 29 H -0.225 1.225 30 H -0.167 1.167 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.183 0.817 37 H 0.200 0.800 38 H 0.207 0.793 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.061 0.939 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.070 0.930 49 H 0.049 0.951 50 H 0.028 0.972 51 H 0.201 0.799 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.246 -3.675 25.440 28.916 hybrid contribution 0.527 -0.811 -0.982 1.378 sum 13.773 -4.486 24.458 28.426 Atomic orbital electron populations 1.21804 0.93379 1.02892 1.02156 1.21326 0.96835 0.99058 0.93449 0.92332 1.21682 0.78344 1.01647 0.98157 1.48080 1.07060 1.60647 1.17726 1.18043 0.86084 0.77424 0.82081 1.90749 1.75173 1.41436 1.36129 1.20644 0.93702 0.95433 1.08094 1.22070 0.97147 0.95185 0.92364 1.22496 0.92888 1.02373 1.00642 1.23409 1.02379 0.86548 0.91250 1.67842 1.14160 1.27350 1.15234 1.19809 0.87077 0.91209 0.93123 1.59868 1.57659 1.00230 1.05495 1.22282 0.98156 1.00214 0.89934 1.22358 1.00183 0.97500 0.90982 1.21935 0.98525 0.98051 0.82510 1.21877 0.95574 1.00865 0.97937 1.21284 0.95048 1.00367 0.93265 0.89725 1.20868 0.97220 0.93525 0.85075 1.42665 1.66015 1.29211 1.02063 1.19023 1.26984 1.06400 0.84234 0.93192 1.25585 1.02733 1.03044 0.94504 1.69909 1.53146 1.42647 0.98117 0.85370 0.78926 0.79538 0.77742 1.20206 1.22483 1.16722 0.91488 0.92811 0.91375 0.89963 0.89270 0.81741 0.80017 0.79322 0.93729 0.89557 0.92405 0.92592 0.89415 0.93903 0.88513 0.89294 0.90949 0.93047 0.95058 0.97234 0.79850 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.82 71.98 0.63 -2.49 16 2 C -0.09 -2.05 2.42 -10.71 -0.03 -2.08 16 3 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.12 2.65 5.72 86.36 0.49 3.15 16 5 N -0.60 -13.35 2.98 -822.71 -2.45 -15.80 16 6 C 0.58 15.04 6.82 86.67 0.59 15.63 16 7 O -0.56 -18.52 16.10 -4.06 -0.07 -18.58 16 8 C -0.17 -3.81 4.63 -19.88 -0.09 -3.90 16 9 C -0.04 -0.59 7.92 22.71 0.18 -0.41 16 10 C -0.16 -1.65 10.09 22.32 0.23 -1.42 16 11 C 0.12 1.64 11.16 84.72 0.95 2.58 16 12 N -0.53 -11.06 9.57 -192.51 -1.84 -12.90 16 13 C 0.32 7.52 5.33 133.64 0.71 8.24 16 14 N -0.51 -12.66 4.07 -751.07 -3.05 -15.71 16 15 C 0.04 0.86 9.39 127.69 1.20 2.06 16 16 C 0.04 0.79 9.47 127.69 1.21 2.00 16 17 C 0.11 2.12 5.60 86.35 0.48 2.61 16 18 C -0.12 -3.15 5.25 30.67 0.16 -2.99 16 19 C -0.08 -2.17 1.73 -10.77 -0.02 -2.19 16 20 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 21 C 0.16 5.88 5.41 86.38 0.47 6.35 16 22 N -0.75 -34.13 5.12 -343.45 -1.76 -35.89 16 23 C -0.24 -13.42 10.47 84.03 0.88 -12.54 16 24 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 25 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 26 N -0.99 -63.43 13.97 21.65 0.30 -63.13 16 27 Si 0.96 43.94 27.74 68.60 1.90 45.84 16 28 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 29 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 30 H -0.24 -9.64 6.52 99.48 0.65 -8.99 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.33 6.30 -2.39 -0.02 1.32 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.99 7.00 -2.39 -0.02 1.97 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.17 1.54 7.80 -2.91 -0.02 1.52 16 37 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.04 0.89 7.74 -2.39 -0.02 0.88 16 40 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.33 8.11 -2.39 -0.02 1.31 16 43 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.04 0.89 8.11 -2.39 -0.02 0.87 16 45 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.09 1.56 5.41 -2.39 -0.01 1.55 16 47 H 0.07 2.00 7.15 -2.39 -0.02 1.98 16 48 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 49 H 0.03 1.19 6.14 -2.39 -0.01 1.17 16 50 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.37 15.40 4.71 -92.71 -0.44 14.96 16 52 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -78.24 406.51 1.96 -76.28 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.41 Total: 28.78 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 8.51 Total: 11.12 kcal Atomic # 7 Polarization: -134.63 SS G_CDS: -8.80 Total: -143.44 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.07 Total: -18.58 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.84 kcal Total: -78.24 1.96 -76.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185680900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.128 kcal (2) G-P(sol) polarization free energy of solvation -78.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds