Wall clock time and date at job start Wed Apr 1 2020 04:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49831 * 2 1 4 4 C 1.53190 * 109.49591 * 239.93470 * 2 1 3 5 5 N 1.46930 * 108.77762 * 294.68038 * 4 2 1 6 6 C 1.34772 * 120.63068 * 126.36538 * 5 4 2 7 7 O 1.21611 * 120.00213 * 354.17180 * 6 5 4 8 8 C 1.47426 * 119.99949 * 174.44144 * 6 5 4 9 9 C 1.39977 * 120.60872 * 306.05092 * 8 6 5 10 10 C 1.38336 * 118.36609 * 179.73619 * 9 8 6 11 11 C 1.38373 * 119.50617 * 0.56339 * 10 9 8 12 12 N 1.31848 * 121.22204 * 359.69622 * 11 10 9 13 13 C 1.32432 * 121.77303 * 0.02562 * 12 11 10 14 14 N 1.38265 * 119.82699 * 180.02562 * 13 12 11 15 15 C 1.46906 * 110.99610 * 304.93367 * 14 13 12 16 16 C 1.46895 * 111.00307 * 68.88863 * 14 13 12 17 17 C 1.46921 * 118.73760 * 306.64542 * 5 4 2 18 18 C 1.52764 * 109.01037 * 53.30622 * 17 5 4 19 19 C 1.53035 * 109.49934 * 120.09688 * 2 1 3 20 20 H 1.08997 * 109.46029 * 178.60707 * 19 2 1 21 21 C 1.53007 * 109.45858 * 298.56590 * 19 2 1 22 22 N 1.46507 * 109.46819 * 185.00293 * 21 19 2 23 23 C 1.36939 * 119.99415 * 180.02562 * 22 21 19 24 24 H 1.07994 * 120.00264 * 359.97438 * 23 22 21 25 25 C 1.38812 * 119.99159 * 179.97438 * 23 22 21 26 26 N 1.31620 * 120.00680 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99601 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47348 * 59.99868 * 27 25 23 29 29 H 1.48496 * 109.47150 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.46976 * 299.99657 * 27 25 23 31 31 H 1.09001 * 109.46992 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47189 * 300.06271 * 1 2 3 33 33 H 1.08997 * 109.47796 * 60.06398 * 1 2 3 34 34 H 1.09002 * 109.58845 * 174.89546 * 4 2 1 35 35 H 1.08997 * 109.70410 * 54.53925 * 4 2 1 36 36 H 1.08001 * 120.81342 * 359.97438 * 9 8 6 37 37 H 1.07998 * 120.24382 * 180.28226 * 10 9 8 38 38 H 1.08003 * 119.39110 * 179.67970 * 11 10 9 39 39 H 1.09008 * 109.46847 * 60.00337 * 15 14 13 40 40 H 1.08999 * 109.47031 * 179.97438 * 15 14 13 41 41 H 1.08994 * 109.47349 * 300.00612 * 15 14 13 42 42 H 1.08998 * 109.46964 * 55.00312 * 16 14 13 43 43 H 1.09004 * 109.47056 * 175.00637 * 16 14 13 44 44 H 1.08998 * 109.47094 * 295.00406 * 16 14 13 45 45 H 1.09003 * 109.58753 * 173.13761 * 17 5 4 46 46 H 1.08996 * 109.59202 * 293.56811 * 17 5 4 47 47 H 1.08995 * 109.56600 * 185.54831 * 18 17 5 48 48 H 1.09004 * 109.38347 * 65.51252 * 18 17 5 49 49 H 1.08998 * 109.46939 * 304.99845 * 21 19 2 50 50 H 1.08997 * 109.47061 * 65.00623 * 21 19 2 51 51 H 0.96999 * 119.99816 * 359.97438 * 22 21 19 52 52 H 0.97001 * 120.00008 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 1.6515 -2.1379 -1.1701 6 6 0.9739 -2.7213 -2.1785 7 8 0.5868 -2.0528 -3.1178 8 6 0.6968 -4.1687 -2.1401 9 6 1.7364 -5.0890 -1.9620 10 6 1.4232 -6.4359 -1.9276 11 6 0.1067 -6.8336 -2.0803 12 7 -0.8581 -5.9516 -2.2525 13 6 -0.6150 -4.6502 -2.2879 14 7 -1.6577 -3.7606 -2.4701 15 6 -2.4147 -4.0792 -3.6881 16 6 -2.5384 -3.7337 -1.2948 17 6 2.0091 -2.9025 0.0324 18 6 1.5031 -2.1561 1.2654 19 6 2.0408 -0.7234 1.2481 20 1 3.1305 -0.7447 1.2350 21 6 1.5607 0.0164 2.4984 22 7 2.1469 -0.6049 3.6887 23 6 1.8579 -0.1095 4.9322 24 1 1.1983 0.7393 5.0354 25 6 2.4129 -0.6985 6.0600 26 7 3.2164 -1.7334 5.9342 27 14 2.0182 -0.0233 7.7564 28 1 0.5544 -0.1039 7.9931 29 1 2.7312 -0.8221 8.7853 30 1 2.4558 1.3934 7.8394 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8905 34 1 3.1274 -0.6459 -1.2982 35 1 1.6027 -0.2732 -2.1403 36 1 2.7575 -4.7553 -1.8503 37 1 2.2010 -7.1719 -1.7871 38 1 -0.1351 -7.8860 -2.0583 39 1 -2.8244 -5.0862 -3.6082 40 1 -3.2290 -3.3645 -3.8072 41 1 -1.7528 -4.0238 -4.5523 42 1 -1.9494 -3.5138 -0.4044 43 1 -3.2979 -2.9633 -1.4275 44 1 -3.0213 -4.7042 -1.1804 45 1 1.5473 -3.8889 -0.0110 46 1 3.0926 -3.0063 0.0907 47 1 1.8481 -2.6634 2.1663 48 1 0.4133 -2.1358 1.2541 49 1 1.8696 1.0603 2.4439 50 1 0.4737 -0.0383 2.5580 51 1 2.7390 -1.3675 3.5959 52 1 3.6039 -2.1451 6.7224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185680902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:08 Heat of formation + Delta-G solvation = 31.172045 kcal Electronic energy + Delta-G solvation = -31993.488422 eV Core-core repulsion = 27993.712026 eV Total energy + Delta-G solvation = -3999.776397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.23764 -39.86412 -37.84145 -37.14002 -34.91503 -33.65641 -32.57766 -31.69421 -30.83033 -30.30873 -27.80085 -27.03680 -26.86862 -25.29380 -24.60212 -23.47375 -22.97311 -21.88636 -21.41537 -20.20710 -18.43349 -17.62702 -17.35939 -17.07424 -16.89434 -16.04006 -15.50478 -15.23903 -15.18358 -14.92837 -14.39126 -14.20264 -14.16265 -13.90998 -13.73574 -13.58617 -13.44878 -13.27918 -12.86605 -12.83350 -12.49485 -12.46023 -12.37411 -12.19180 -12.11605 -11.90162 -11.51900 -11.35190 -11.03147 -10.90535 -10.74988 -10.37026 -10.28026 -10.26841 -10.14260 -10.05560 -9.96620 -9.71338 -9.62363 -9.21661 -8.85287 -8.79860 -8.51652 -6.90341 -5.76837 -3.04476 0.52197 0.83173 2.66311 2.97178 3.39248 3.42391 3.43791 3.48271 3.49086 4.10241 4.41223 4.50540 4.59014 4.73181 4.78157 4.85228 4.95902 5.06046 5.09890 5.15601 5.18129 5.19504 5.29009 5.33393 5.41461 5.49313 5.55078 5.62857 5.64890 5.69287 5.71554 5.72146 5.79488 5.84920 5.89406 5.93179 6.06304 6.09144 6.12808 6.26027 6.34381 6.42988 6.50436 6.54721 6.56549 6.69669 6.83830 6.96780 6.99572 7.39363 7.55081 7.70051 8.19759 8.42805 9.53860 10.12500 10.47137 11.46144 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.002803 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.954251 B = 9988.396603 C =10481.019662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.081 0.919 4 C 0.119 3.881 5 N -0.602 5.602 6 C 0.575 3.425 7 O -0.518 6.518 8 C -0.147 4.147 9 C -0.042 4.042 10 C -0.180 4.180 11 C 0.127 3.873 12 N -0.514 5.514 13 C 0.336 3.664 14 N -0.488 5.488 15 C 0.035 3.965 16 C 0.030 3.970 17 C 0.105 3.895 18 C -0.126 4.126 19 C -0.087 4.087 20 H 0.071 0.929 21 C 0.158 3.842 22 N -0.732 5.732 23 C -0.237 4.237 24 H 0.068 0.932 25 C -0.014 4.014 26 N -0.935 5.935 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.066 0.934 49 H 0.017 0.983 50 H 0.021 0.979 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.116 -8.746 -20.014 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.335 5.335 6 C 0.362 3.638 7 O -0.394 6.394 8 C -0.154 4.154 9 C -0.068 4.068 10 C -0.200 4.200 11 C -0.032 4.032 12 N -0.226 5.226 13 C 0.107 3.893 14 N -0.210 5.210 15 C -0.112 4.112 16 C -0.116 4.116 17 C -0.017 4.017 18 C -0.164 4.164 19 C -0.106 4.106 20 H 0.089 0.911 21 C 0.031 3.969 22 N -0.376 5.376 23 C -0.369 4.369 24 H 0.086 0.914 25 C -0.210 4.210 26 N -0.584 5.584 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.176 0.824 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.035 0.965 50 H 0.039 0.961 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.079 -8.072 -20.543 22.894 hybrid contribution 0.611 -0.514 1.361 1.578 sum -5.467 -8.586 -19.182 21.716 Atomic orbital electron populations 1.21830 0.94771 1.02031 1.01320 1.21461 0.96791 0.99382 0.94122 0.90091 1.21677 0.99181 0.80023 0.99384 1.47993 1.56116 1.11689 1.17717 1.17709 0.77403 0.86136 0.82571 1.90771 1.50128 1.63905 1.34581 1.20661 0.93821 0.95153 1.05753 1.21769 0.99258 0.92682 0.93129 1.22086 0.98467 0.96420 1.02979 1.22739 0.88511 0.99177 0.92774 1.67827 1.37492 1.02899 1.14361 1.19708 0.90728 0.86852 0.91971 1.59861 1.11083 1.45208 1.04894 1.22331 0.97792 1.00172 0.90876 1.22422 0.96203 1.01367 0.91640 1.21826 1.00326 0.95034 0.84548 1.21877 1.01392 0.96137 0.97017 1.21294 1.00173 0.94580 0.94584 0.91082 1.20715 0.95906 0.94637 0.85648 1.42375 1.56867 1.37523 1.00847 1.19189 1.23013 1.10781 0.83876 0.91353 1.24710 1.00128 0.98394 0.97757 1.69639 1.35796 1.24342 1.28629 0.86286 0.77645 0.78068 0.84309 1.21319 1.21719 1.21318 0.92569 0.92178 0.93263 0.91574 0.89066 0.83862 0.83878 0.82362 0.93936 0.90666 0.91338 0.91309 0.90280 0.94102 0.90468 0.91187 0.89495 0.91492 0.96493 0.96100 0.78341 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.38 37.16 0.31 -1.61 16 2 C -0.10 -1.28 2.72 -90.50 -0.25 -1.52 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.47 5.84 -3.71 -0.02 1.44 16 5 N -0.60 -7.54 2.42 -174.30 -0.42 -7.96 16 6 C 0.58 8.01 6.82 -12.52 -0.09 7.92 16 7 O -0.52 -8.74 16.10 5.27 0.08 -8.65 16 8 C -0.15 -1.81 4.62 -104.65 -0.48 -2.29 16 9 C -0.04 -0.39 7.93 -38.89 -0.31 -0.70 16 10 C -0.18 -1.38 10.09 -39.50 -0.40 -1.78 16 11 C 0.13 1.11 11.16 -17.50 -0.20 0.91 16 12 N -0.51 -5.91 9.57 -12.20 -0.12 -6.03 16 13 C 0.34 4.24 5.33 -155.18 -0.83 3.42 16 14 N -0.49 -6.13 4.07 -188.74 -0.77 -6.90 16 15 C 0.04 0.38 9.39 60.07 0.56 0.94 16 16 C 0.03 0.33 9.47 60.06 0.57 0.90 16 17 C 0.11 1.25 5.59 -3.93 -0.02 1.23 16 18 C -0.13 -1.84 4.89 -26.83 -0.13 -1.97 16 19 C -0.09 -1.33 1.96 -90.58 -0.18 -1.51 16 20 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 21 C 0.16 3.09 5.19 -4.03 -0.02 3.07 16 22 N -0.73 -18.01 5.32 -59.90 -0.32 -18.32 16 23 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 26 N -0.94 -27.78 13.06 55.49 0.72 -27.06 16 27 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.06 0.81 5.97 -51.93 -0.31 0.50 16 32 H 0.06 0.84 6.59 -51.93 -0.34 0.50 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.19 6.99 -51.93 -0.36 0.83 16 36 H 0.14 1.09 7.81 -52.49 -0.41 0.68 16 37 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.16 0.90 8.06 -52.48 -0.42 0.47 16 39 H 0.04 0.44 7.74 -51.92 -0.40 0.03 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.04 0.43 8.11 -51.93 -0.42 0.01 16 45 H 0.08 0.87 5.39 -51.93 -0.28 0.59 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 48 H 0.07 1.02 6.33 -51.93 -0.33 0.70 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 51 H 0.38 9.77 6.84 -40.82 -0.28 9.49 16 52 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 405.58 15.07 6.11 6.11 Total: -1.00 -33.25 405.58 -9.92 -43.17 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.48 Total: 7.15 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.72 Total: 1.23 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.90 Total: -66.28 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.25 -9.92 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185680902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.341 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds