Wall clock time and date at job start Wed Apr 1 2020 04:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49831 * 2 1 4 4 C 1.53190 * 109.49591 * 239.93470 * 2 1 3 5 5 N 1.46930 * 108.77762 * 294.68038 * 4 2 1 6 6 C 1.34772 * 120.63068 * 126.36538 * 5 4 2 7 7 O 1.21611 * 120.00213 * 354.17180 * 6 5 4 8 8 C 1.47426 * 119.99949 * 174.44144 * 6 5 4 9 9 C 1.39977 * 120.60872 * 306.05092 * 8 6 5 10 10 C 1.38336 * 118.36609 * 179.73619 * 9 8 6 11 11 C 1.38373 * 119.50617 * 0.56339 * 10 9 8 12 12 N 1.31848 * 121.22204 * 359.69622 * 11 10 9 13 13 C 1.32432 * 121.77303 * 0.02562 * 12 11 10 14 14 N 1.38265 * 119.82699 * 180.02562 * 13 12 11 15 15 C 1.46906 * 110.99610 * 304.93367 * 14 13 12 16 16 C 1.46895 * 111.00307 * 68.88863 * 14 13 12 17 17 C 1.46921 * 118.73760 * 306.64542 * 5 4 2 18 18 C 1.52764 * 109.01037 * 53.30622 * 17 5 4 19 19 C 1.53035 * 109.49934 * 120.09688 * 2 1 3 20 20 H 1.08997 * 109.46029 * 178.60707 * 19 2 1 21 21 C 1.53007 * 109.45858 * 298.56590 * 19 2 1 22 22 N 1.46507 * 109.46819 * 185.00293 * 21 19 2 23 23 C 1.36939 * 119.99415 * 180.02562 * 22 21 19 24 24 H 1.07994 * 120.00264 * 359.97438 * 23 22 21 25 25 C 1.38812 * 119.99159 * 179.97438 * 23 22 21 26 26 N 1.31620 * 120.00680 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99601 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47348 * 59.99868 * 27 25 23 29 29 H 1.48496 * 109.47150 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.46976 * 299.99657 * 27 25 23 31 31 H 1.09001 * 109.46992 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47189 * 300.06271 * 1 2 3 33 33 H 1.08997 * 109.47796 * 60.06398 * 1 2 3 34 34 H 1.09002 * 109.58845 * 174.89546 * 4 2 1 35 35 H 1.08997 * 109.70410 * 54.53925 * 4 2 1 36 36 H 1.08001 * 120.81342 * 359.97438 * 9 8 6 37 37 H 1.07998 * 120.24382 * 180.28226 * 10 9 8 38 38 H 1.08003 * 119.39110 * 179.67970 * 11 10 9 39 39 H 1.09008 * 109.46847 * 60.00337 * 15 14 13 40 40 H 1.08999 * 109.47031 * 179.97438 * 15 14 13 41 41 H 1.08994 * 109.47349 * 300.00612 * 15 14 13 42 42 H 1.08998 * 109.46964 * 55.00312 * 16 14 13 43 43 H 1.09004 * 109.47056 * 175.00637 * 16 14 13 44 44 H 1.08998 * 109.47094 * 295.00406 * 16 14 13 45 45 H 1.09003 * 109.58753 * 173.13761 * 17 5 4 46 46 H 1.08996 * 109.59202 * 293.56811 * 17 5 4 47 47 H 1.08995 * 109.56600 * 185.54831 * 18 17 5 48 48 H 1.09004 * 109.38347 * 65.51252 * 18 17 5 49 49 H 1.08998 * 109.46939 * 304.99845 * 21 19 2 50 50 H 1.08997 * 109.47061 * 65.00623 * 21 19 2 51 51 H 0.96999 * 119.99816 * 359.97438 * 22 21 19 52 52 H 0.97001 * 120.00008 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 1.6515 -2.1379 -1.1701 6 6 0.9739 -2.7213 -2.1785 7 8 0.5868 -2.0528 -3.1178 8 6 0.6968 -4.1687 -2.1401 9 6 1.7364 -5.0890 -1.9620 10 6 1.4232 -6.4359 -1.9276 11 6 0.1067 -6.8336 -2.0803 12 7 -0.8581 -5.9516 -2.2525 13 6 -0.6150 -4.6502 -2.2879 14 7 -1.6577 -3.7606 -2.4701 15 6 -2.4147 -4.0792 -3.6881 16 6 -2.5384 -3.7337 -1.2948 17 6 2.0091 -2.9025 0.0324 18 6 1.5031 -2.1561 1.2654 19 6 2.0408 -0.7234 1.2481 20 1 3.1305 -0.7447 1.2350 21 6 1.5607 0.0164 2.4984 22 7 2.1469 -0.6049 3.6887 23 6 1.8579 -0.1095 4.9322 24 1 1.1983 0.7393 5.0354 25 6 2.4129 -0.6985 6.0600 26 7 3.2164 -1.7334 5.9342 27 14 2.0182 -0.0233 7.7564 28 1 0.5544 -0.1039 7.9931 29 1 2.7312 -0.8221 8.7853 30 1 2.4558 1.3934 7.8394 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8905 34 1 3.1274 -0.6459 -1.2982 35 1 1.6027 -0.2732 -2.1403 36 1 2.7575 -4.7553 -1.8503 37 1 2.2010 -7.1719 -1.7871 38 1 -0.1351 -7.8860 -2.0583 39 1 -2.8244 -5.0862 -3.6082 40 1 -3.2290 -3.3645 -3.8072 41 1 -1.7528 -4.0238 -4.5523 42 1 -1.9494 -3.5138 -0.4044 43 1 -3.2979 -2.9633 -1.4275 44 1 -3.0213 -4.7042 -1.1804 45 1 1.5473 -3.8889 -0.0110 46 1 3.0926 -3.0063 0.0907 47 1 1.8481 -2.6634 2.1663 48 1 0.4133 -2.1358 1.2541 49 1 1.8696 1.0603 2.4439 50 1 0.4737 -0.0383 2.5580 51 1 2.7390 -1.3675 3.5959 52 1 3.6039 -2.1451 6.7224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185680902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:06 Heat of formation + Delta-G solvation = 10.924871 kcal Electronic energy + Delta-G solvation = -31994.366406 eV Core-core repulsion = 27993.712026 eV Total energy + Delta-G solvation = -4000.654380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.11052 -40.86562 -39.02533 -37.94822 -36.51172 -34.96995 -33.70148 -32.94421 -31.96064 -31.60473 -28.65685 -28.49001 -27.99375 -26.12879 -25.79101 -24.97428 -24.12150 -22.96638 -22.57750 -21.26243 -19.69979 -19.03035 -18.39273 -18.13530 -17.88829 -17.06273 -16.76299 -16.43802 -16.13453 -15.95196 -15.79500 -15.42364 -15.30691 -15.14519 -15.03665 -14.69240 -14.45977 -14.26996 -14.19515 -13.92342 -13.67119 -13.55869 -13.45537 -13.22631 -12.99862 -12.96079 -12.79215 -12.77981 -12.66303 -12.45987 -12.22203 -12.02221 -11.89510 -11.55000 -11.38904 -11.21396 -11.14570 -10.90784 -10.82996 -10.64701 -10.01434 -9.64235 -9.57322 -8.94759 -7.93080 -5.20304 -0.24817 0.11554 1.48105 1.50213 1.56302 1.65275 2.02100 2.57447 2.59523 2.65705 3.31067 3.40264 3.57521 3.73787 3.76973 3.87585 3.89609 3.98804 4.04859 4.11685 4.24379 4.31024 4.31832 4.35188 4.40162 4.45112 4.50425 4.51021 4.60057 4.68223 4.73986 4.79481 4.81456 4.85613 4.87149 4.87327 4.96117 5.00453 5.05919 5.10070 5.18411 5.21514 5.26076 5.35154 5.42249 5.50984 5.55582 5.65568 5.73020 6.16220 6.29965 6.38543 6.79922 7.16778 7.36831 8.13552 8.38002 9.30014 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.002803 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.954251 B = 9988.396603 C =10481.019662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.093 0.907 4 C 0.122 3.878 5 N -0.598 5.598 6 C 0.577 3.423 7 O -0.555 6.555 8 C -0.172 4.172 9 C -0.043 4.043 10 C -0.166 4.166 11 C 0.123 3.877 12 N -0.533 5.533 13 C 0.317 3.683 14 N -0.507 5.507 15 C 0.041 3.959 16 C 0.037 3.963 17 C 0.115 3.885 18 C -0.119 4.119 19 C -0.076 4.076 20 H 0.073 0.927 21 C 0.159 3.841 22 N -0.741 5.741 23 C -0.246 4.246 24 H 0.070 0.930 25 C -0.071 4.071 26 N -0.966 5.966 27 Si 0.968 3.032 28 H -0.280 1.280 29 H -0.294 1.294 30 H -0.280 1.280 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.190 0.810 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.016 0.984 50 H 0.016 0.984 51 H 0.376 0.624 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 -9.623 -20.436 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 H 0.111 0.889 4 C 0.000 4.000 5 N -0.330 5.330 6 C 0.365 3.635 7 O -0.433 6.433 8 C -0.179 4.179 9 C -0.069 4.069 10 C -0.185 4.185 11 C -0.036 4.036 12 N -0.245 5.245 13 C 0.089 3.911 14 N -0.230 5.230 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.007 4.007 18 C -0.157 4.157 19 C -0.095 4.095 20 H 0.091 0.909 21 C 0.033 3.967 22 N -0.384 5.384 23 C -0.378 4.378 24 H 0.088 0.912 25 C -0.264 4.264 26 N -0.617 5.617 27 Si 0.798 3.202 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.206 1.206 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.180 0.820 37 H 0.199 0.801 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.034 0.966 50 H 0.034 0.966 51 H 0.209 0.791 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.443 -8.927 -20.978 23.440 hybrid contribution 0.389 -0.279 1.466 1.542 sum -5.055 -9.206 -19.513 22.160 Atomic orbital electron populations 1.21751 0.95204 1.01189 1.01140 1.21407 0.96271 0.99911 0.93364 0.88900 1.21685 1.00255 0.79766 0.98331 1.48007 1.55675 1.11805 1.17541 1.17978 0.76576 0.86840 0.82076 1.90742 1.51610 1.64984 1.35994 1.20669 0.94699 0.94565 1.07972 1.22065 0.99385 0.93072 0.92401 1.22487 0.98949 0.96353 1.00711 1.23392 0.88681 1.00202 0.91309 1.67842 1.38759 1.02722 1.15227 1.19802 0.90833 0.87421 0.93080 1.59861 1.11596 1.46042 1.05496 1.22283 0.97677 1.00593 0.90021 1.22355 0.96005 1.01711 0.90909 1.21775 1.01388 0.94785 0.82781 1.21742 1.00588 0.95862 0.97527 1.21166 1.00131 0.94698 0.93472 0.90908 1.20833 0.95302 0.94739 0.85857 1.42539 1.56898 1.37475 1.01496 1.19560 1.22377 1.10530 0.85312 0.91203 1.25469 1.00616 0.99053 1.01230 1.69781 1.37054 1.25634 1.29183 0.85291 0.77502 0.77506 0.79939 1.20661 1.22011 1.20587 0.93747 0.93000 0.92699 0.89594 0.89664 0.81999 0.80148 0.79292 0.93787 0.89494 0.92426 0.92700 0.89310 0.93980 0.89547 0.89202 0.91748 0.92684 0.96637 0.96613 0.79124 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 8.38 71.98 0.60 -3.03 16 2 C -0.09 -2.25 2.72 -10.72 -0.03 -2.28 16 3 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.12 2.81 5.84 86.36 0.50 3.31 16 5 N -0.60 -14.31 2.42 -823.62 -1.99 -16.30 16 6 C 0.58 15.80 6.82 86.66 0.59 16.39 16 7 O -0.56 -18.84 16.10 -4.07 -0.07 -18.90 16 8 C -0.17 -4.09 4.62 -19.88 -0.09 -4.18 16 9 C -0.04 -0.70 7.93 22.71 0.18 -0.52 16 10 C -0.17 -2.00 10.09 22.33 0.23 -1.77 16 11 C 0.12 1.83 11.16 84.72 0.95 2.78 16 12 N -0.53 -11.71 9.57 -192.51 -1.84 -13.55 16 13 C 0.32 7.90 5.33 133.64 0.71 8.62 16 14 N -0.51 -12.91 4.07 -751.05 -3.05 -15.96 16 15 C 0.04 0.89 9.39 127.69 1.20 2.08 16 16 C 0.04 0.83 9.47 127.69 1.21 2.04 16 17 C 0.12 2.56 5.59 86.22 0.48 3.04 16 18 C -0.12 -3.43 4.89 30.53 0.15 -3.28 16 19 C -0.08 -2.26 1.96 -10.77 -0.02 -2.28 16 20 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 21 C 0.16 6.20 5.19 86.38 0.45 6.65 16 22 N -0.74 -36.71 5.32 -343.43 -1.83 -38.54 16 23 C -0.25 -13.65 9.99 84.03 0.84 -12.81 16 24 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 25 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 26 N -0.97 -57.77 13.06 21.65 0.28 -57.49 16 27 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 28 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 29 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 30 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 31 H 0.04 1.29 5.97 -2.39 -0.01 1.27 16 32 H 0.05 1.45 6.59 -2.39 -0.02 1.43 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 2.14 6.99 -2.39 -0.02 2.13 16 36 H 0.16 1.96 7.81 -2.91 -0.02 1.94 16 37 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 38 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.04 0.91 7.74 -2.38 -0.02 0.89 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 1.35 8.11 -2.39 -0.02 1.33 16 43 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.04 0.90 8.11 -2.39 -0.02 0.89 16 45 H 0.09 1.81 5.39 -2.39 -0.01 1.80 16 46 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.06 2.17 7.15 -2.39 -0.02 2.16 16 48 H 0.05 1.71 6.33 -2.38 -0.02 1.69 16 49 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.02 0.64 6.74 -2.39 -0.02 0.63 16 51 H 0.38 19.44 6.84 -92.71 -0.63 18.80 16 52 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -72.43 405.58 2.23 -70.20 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.28 Total: 31.57 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 8.41 Total: 11.18 kcal Atomic # 7 Polarization: -133.41 SS G_CDS: -8.43 Total: -141.84 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.07 Total: -18.90 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -72.43 2.23 -70.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185680902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.126 kcal (2) G-P(sol) polarization free energy of solvation -72.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds