Wall clock time and date at job start Wed Apr 1 2020 04:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46947 * 2 1 4 4 C 1.50694 * 109.47484 * 120.00148 * 2 1 3 5 5 N 1.32166 * 120.53676 * 305.21836 * 4 2 1 6 6 C 1.31846 * 120.96975 * 179.97438 * 5 4 2 7 7 N 1.31884 * 122.09669 * 359.97438 * 6 5 4 8 8 C 1.32135 * 120.96666 * 359.73934 * 7 6 5 9 9 C 1.39922 * 120.54063 * 125.19217 * 4 2 1 10 10 C 1.47831 * 120.93909 * 0.02562 * 9 4 2 11 11 O 1.21553 * 119.99739 * 54.40137 * 10 9 4 12 12 N 1.34776 * 120.00094 * 234.40014 * 10 9 4 13 13 C 1.46924 * 120.63398 * 355.68288 * 12 10 9 14 14 C 1.53190 * 108.77800 * 126.66024 * 13 12 10 15 15 C 1.53038 * 109.31002 * 54.64078 * 14 13 12 16 16 H 1.09003 * 109.46348 * 58.65058 * 15 14 13 17 17 C 1.52999 * 109.46142 * 178.61148 * 15 14 13 18 18 N 1.46494 * 109.47214 * 295.06827 * 17 15 14 19 19 C 1.36940 * 120.00025 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00139 * 359.97438 * 19 18 17 21 21 C 1.38819 * 119.99978 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99997 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99867 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46950 * 90.00291 * 23 21 19 25 25 H 1.48498 * 109.47082 * 210.00342 * 23 21 19 26 26 H 1.48497 * 109.47239 * 330.00482 * 23 21 19 27 27 C 1.53042 * 109.53812 * 298.63337 * 15 14 13 28 28 H 1.09003 * 109.51987 * 301.39895 * 27 15 14 29 29 C 1.53002 * 109.50041 * 181.32001 * 27 15 14 30 30 C 1.46930 * 120.62860 * 175.96153 * 12 10 9 31 31 H 1.09002 * 109.46853 * 300.00158 * 1 2 3 32 32 H 1.09009 * 109.47266 * 60.00039 * 1 2 3 33 33 H 1.08998 * 109.46856 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47125 * 240.00312 * 2 1 3 35 35 H 1.09005 * 109.46690 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47211 * 299.99703 * 3 2 1 37 37 H 1.08991 * 109.47032 * 60.00107 * 3 2 1 38 38 H 1.08006 * 118.95319 * 179.97438 * 6 5 4 39 39 H 1.07993 * 120.54413 * 180.27000 * 8 7 6 40 40 H 1.08998 * 109.58910 * 246.45439 * 13 12 10 41 41 H 1.09007 * 109.58045 * 6.87735 * 13 12 10 42 42 H 1.08997 * 109.50294 * 294.68554 * 14 13 12 43 43 H 1.09005 * 109.52202 * 174.60003 * 14 13 12 44 44 H 1.08999 * 109.47134 * 55.06701 * 17 15 14 45 45 H 1.08996 * 109.47266 * 175.06227 * 17 15 14 46 46 H 0.97001 * 120.00115 * 359.97438 * 18 17 15 47 47 H 0.96992 * 120.00074 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.46908 * 300.16287 * 29 27 15 49 49 H 1.09003 * 109.47217 * 60.15591 * 29 27 15 50 50 H 1.08997 * 109.47345 * 180.15799 * 29 27 15 51 51 H 1.08996 * 109.58815 * 353.11672 * 30 12 10 52 52 H 1.08997 * 109.58714 * 113.40714 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.6373 -0.3310 2.4332 6 6 2.0711 -0.9468 3.5153 7 7 2.9113 -1.9615 3.4550 8 6 3.3532 -2.4101 2.2933 9 6 2.9242 -1.7827 1.1179 10 6 3.3951 -2.2441 -0.2053 11 8 3.9098 -1.4571 -0.9755 12 7 3.2537 -3.5373 -0.5576 13 6 2.7206 -4.5191 0.3965 14 6 1.5434 -5.2513 -0.2553 15 6 1.9964 -5.8519 -1.5880 16 1 2.8265 -6.5367 -1.4143 17 6 0.8327 -6.6135 -2.2257 18 7 0.4783 -7.7584 -1.3834 19 6 -0.5423 -8.5922 -1.7553 20 1 -1.0863 -8.4055 -2.6694 21 6 -0.8784 -9.6769 -0.9568 22 7 -1.8597 -10.4780 -1.3141 23 14 0.0620 -9.9994 0.6247 24 1 -0.5978 -9.2854 1.7472 25 1 0.0742 -11.4577 0.9046 26 1 1.4569 -9.5115 0.4794 27 6 2.4481 -4.7313 -2.5273 28 1 1.6260 -4.0324 -2.6823 29 6 2.8697 -5.3298 -3.8708 30 6 3.6355 -3.9931 -1.9012 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 1.7274 -0.6094 4.4821 39 1 4.0378 -3.2443 2.2516 40 1 3.4990 -5.2368 0.6557 41 1 2.3792 -4.0065 1.2959 42 1 0.7297 -4.5477 -0.4312 43 1 1.1995 -6.0479 0.4045 44 1 -0.0277 -5.9508 -2.3187 45 1 1.1276 -6.9667 -3.2138 46 1 0.9671 -7.9264 -0.5625 47 1 -2.0943 -11.2361 -0.7563 48 1 3.6909 -6.0294 -3.7151 49 1 2.0246 -5.8549 -4.3159 50 1 3.1940 -4.5315 -4.5384 51 1 3.8977 -3.1335 -2.5179 52 1 4.4901 -4.6659 -1.8296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185698257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:55 Heat of formation + Delta-G solvation = 15.291515 kcal Electronic energy + Delta-G solvation = -31745.489804 eV Core-core repulsion = 27745.024776 eV Total energy + Delta-G solvation = -4000.465028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.86669 -40.18228 -38.27002 -36.44519 -35.26355 -34.04441 -33.25769 -32.21666 -31.85718 -30.76956 -27.40784 -27.38598 -27.17184 -25.52113 -25.00691 -23.61586 -22.64423 -21.38864 -21.18713 -20.45295 -19.58004 -18.38440 -17.73360 -17.40578 -17.06552 -16.49322 -15.51109 -15.10259 -15.00722 -14.90301 -14.66898 -14.40705 -14.34358 -14.25006 -13.92584 -13.51349 -13.43440 -13.42295 -13.07801 -12.97342 -12.52018 -12.43324 -12.11578 -12.09807 -12.01264 -11.85887 -11.78682 -11.60086 -11.39919 -11.18033 -11.07075 -10.95472 -10.89484 -10.58456 -10.49424 -10.24380 -10.20127 -10.09518 -9.79779 -9.64752 -9.62064 -8.94173 -8.84952 -7.26011 -5.80407 -3.15855 0.19231 0.60822 2.23959 2.63116 3.30404 3.31987 3.33811 3.41102 3.56723 3.69135 3.87139 4.02436 4.47068 4.54670 4.56325 4.67643 4.73749 4.76364 4.82658 4.84246 4.86525 5.03740 5.08973 5.19861 5.28646 5.31218 5.41144 5.48898 5.52046 5.58164 5.59791 5.60577 5.61844 5.68264 5.69865 5.71233 5.81764 5.85799 5.96729 6.03336 6.04778 6.08029 6.11868 6.23788 6.30071 6.34403 6.48438 6.67299 6.74665 7.03547 7.61705 7.75173 7.96012 8.38688 9.17680 9.89907 10.09573 11.38212 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011903 B = 0.003096 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.833839 B = 9042.048107 C = 9926.445948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.135 4.135 4 C 0.233 3.767 5 N -0.513 5.513 6 C 0.311 3.689 7 N -0.523 5.523 8 C 0.182 3.818 9 C -0.233 4.233 10 C 0.572 3.428 11 O -0.528 6.528 12 N -0.598 5.598 13 C 0.097 3.903 14 C -0.127 4.127 15 C -0.094 4.094 16 H 0.073 0.927 17 C 0.161 3.839 18 N -0.755 5.755 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.096 4.096 28 H 0.075 0.925 29 C -0.148 4.148 30 C 0.118 3.882 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.202 0.798 39 H 0.173 0.827 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.025 0.975 45 H 0.033 0.967 46 H 0.359 0.641 47 H 0.259 0.741 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.053 0.947 51 H 0.093 0.907 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.868 21.703 4.706 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.192 4.192 4 C 0.086 3.914 5 N -0.226 5.226 6 C 0.025 3.975 7 N -0.236 5.236 8 C 0.015 3.985 9 C -0.240 4.240 10 C 0.358 3.642 11 O -0.405 6.405 12 N -0.330 5.330 13 C -0.025 4.025 14 C -0.165 4.165 15 C -0.112 4.112 16 H 0.092 0.908 17 C 0.034 3.966 18 N -0.401 5.401 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.582 5.582 23 Si 0.713 3.287 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.116 4.116 28 H 0.094 0.906 29 C -0.205 4.205 30 C -0.004 4.004 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.218 0.782 39 H 0.190 0.810 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.043 0.957 45 H 0.051 0.949 46 H 0.192 0.808 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.072 0.928 51 H 0.112 0.888 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.632 22.331 5.068 25.684 hybrid contribution 0.835 -0.930 0.622 1.396 sum 12.466 21.401 5.690 25.412 Atomic orbital electron populations 1.21801 0.92778 1.02368 1.02957 1.20357 0.97081 0.97142 0.92873 1.21712 1.01312 0.93631 1.02586 1.21804 0.87333 0.88197 0.94040 1.68282 1.25577 1.30268 0.98504 1.25216 0.87824 0.86813 0.97687 1.68472 1.12728 1.14189 1.28213 1.23479 0.93385 0.95284 0.86377 1.21604 1.04520 1.01434 0.96462 1.17803 0.78751 0.82027 0.85620 1.90797 1.43611 1.53676 1.52417 1.48075 1.62732 1.07327 1.14833 1.22090 0.97252 0.91343 0.91829 1.21943 0.96748 1.00178 0.97628 1.21409 0.99447 0.96180 0.94209 0.90845 1.20728 0.93455 0.88589 0.93824 1.42726 1.41061 1.30483 1.25841 1.19058 1.07481 1.04046 1.06758 0.89276 1.24676 0.98291 0.97644 0.98563 1.69695 1.31235 1.17982 1.39322 0.86572 0.79766 0.77461 0.84869 1.21078 1.21689 1.20362 1.21453 0.97534 0.97153 0.95453 0.90612 1.21839 1.02317 1.00697 0.95689 1.21797 0.97037 0.99646 0.81891 0.91296 0.91563 0.92675 0.88442 0.92418 0.91564 0.91798 0.78184 0.80979 0.90464 0.90230 0.91311 0.89822 0.95694 0.94892 0.80775 0.93042 0.92426 0.91062 0.92774 0.88835 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.06 37.16 0.34 -0.96 16 2 C -0.06 -0.56 2.91 -91.77 -0.27 -0.83 16 3 C -0.13 -1.22 9.15 37.16 0.34 -0.88 16 4 C 0.23 2.57 5.52 -81.82 -0.45 2.12 16 5 N -0.51 -5.37 9.99 -10.48 -0.10 -5.48 16 6 C 0.31 2.87 12.27 -92.03 -1.13 1.74 16 7 N -0.52 -5.29 10.42 -14.24 -0.15 -5.44 16 8 C 0.18 1.77 8.75 -16.77 -0.15 1.62 16 9 C -0.23 -2.56 4.90 -104.69 -0.51 -3.07 16 10 C 0.57 6.81 6.32 -12.34 -0.08 6.73 16 11 O -0.53 -7.53 15.09 5.32 0.08 -7.45 16 12 N -0.60 -6.43 2.97 -173.89 -0.52 -6.95 16 13 C 0.10 0.99 5.58 -3.71 -0.02 0.97 16 14 C -0.13 -1.61 5.25 -26.61 -0.14 -1.75 16 15 C -0.09 -1.26 1.73 -90.58 -0.16 -1.42 16 16 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 17 C 0.16 2.88 5.41 -4.05 -0.02 2.86 16 18 N -0.76 -17.09 5.12 -59.91 -0.31 -17.40 16 19 C -0.24 -6.75 10.47 -15.06 -0.16 -6.91 16 20 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 23 Si 0.88 21.55 27.74 -169.99 -4.71 16.83 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.27 6.52 56.52 0.37 -5.91 16 27 C -0.10 -1.08 2.41 -90.50 -0.22 -1.30 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 C -0.15 -1.55 8.82 37.16 0.33 -1.22 16 30 C 0.12 1.23 5.70 -3.71 -0.02 1.21 16 31 H 0.07 0.63 7.98 -51.93 -0.41 0.21 16 32 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 1.12 5.78 -51.93 -0.30 0.82 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.20 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.17 1.30 7.42 -52.49 -0.39 0.91 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.77 4.73 -51.93 -0.25 0.52 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.19 7.15 -51.93 -0.37 0.82 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.03 0.60 6.14 -51.93 -0.32 0.28 16 46 H 0.36 7.86 4.71 -40.82 -0.19 7.67 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.83 6.30 -51.93 -0.33 0.51 16 50 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.09 1.02 7.03 -51.93 -0.37 0.66 16 52 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 403.31 15.07 6.08 6.08 Total: -1.00 -33.02 403.31 -9.71 -42.72 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.43 Total: 6.44 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.41 Total: -1.06 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.30 Total: -63.57 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.08 Total: -7.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.02 -9.71 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185698257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.015 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds