Wall clock time and date at job start Wed Apr 1 2020 04:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46947 * 2 1 4 4 C 1.50694 * 109.47484 * 120.00148 * 2 1 3 5 5 N 1.32166 * 120.53676 * 305.21836 * 4 2 1 6 6 C 1.31846 * 120.96975 * 179.97438 * 5 4 2 7 7 N 1.31884 * 122.09669 * 359.97438 * 6 5 4 8 8 C 1.32135 * 120.96666 * 359.73934 * 7 6 5 9 9 C 1.39922 * 120.54063 * 125.19217 * 4 2 1 10 10 C 1.47831 * 120.93909 * 0.02562 * 9 4 2 11 11 O 1.21553 * 119.99739 * 54.40137 * 10 9 4 12 12 N 1.34776 * 120.00094 * 234.40014 * 10 9 4 13 13 C 1.46924 * 120.63398 * 355.68288 * 12 10 9 14 14 C 1.53190 * 108.77800 * 126.66024 * 13 12 10 15 15 C 1.53038 * 109.31002 * 54.64078 * 14 13 12 16 16 H 1.09003 * 109.46348 * 58.65058 * 15 14 13 17 17 C 1.52999 * 109.46142 * 178.61148 * 15 14 13 18 18 N 1.46494 * 109.47214 * 295.06827 * 17 15 14 19 19 C 1.36940 * 120.00025 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00139 * 359.97438 * 19 18 17 21 21 C 1.38819 * 119.99978 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99997 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99867 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46950 * 90.00291 * 23 21 19 25 25 H 1.48498 * 109.47082 * 210.00342 * 23 21 19 26 26 H 1.48497 * 109.47239 * 330.00482 * 23 21 19 27 27 C 1.53042 * 109.53812 * 298.63337 * 15 14 13 28 28 H 1.09003 * 109.51987 * 301.39895 * 27 15 14 29 29 C 1.53002 * 109.50041 * 181.32001 * 27 15 14 30 30 C 1.46930 * 120.62860 * 175.96153 * 12 10 9 31 31 H 1.09002 * 109.46853 * 300.00158 * 1 2 3 32 32 H 1.09009 * 109.47266 * 60.00039 * 1 2 3 33 33 H 1.08998 * 109.46856 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47125 * 240.00312 * 2 1 3 35 35 H 1.09005 * 109.46690 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47211 * 299.99703 * 3 2 1 37 37 H 1.08991 * 109.47032 * 60.00107 * 3 2 1 38 38 H 1.08006 * 118.95319 * 179.97438 * 6 5 4 39 39 H 1.07993 * 120.54413 * 180.27000 * 8 7 6 40 40 H 1.08998 * 109.58910 * 246.45439 * 13 12 10 41 41 H 1.09007 * 109.58045 * 6.87735 * 13 12 10 42 42 H 1.08997 * 109.50294 * 294.68554 * 14 13 12 43 43 H 1.09005 * 109.52202 * 174.60003 * 14 13 12 44 44 H 1.08999 * 109.47134 * 55.06701 * 17 15 14 45 45 H 1.08996 * 109.47266 * 175.06227 * 17 15 14 46 46 H 0.97001 * 120.00115 * 359.97438 * 18 17 15 47 47 H 0.96992 * 120.00074 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.46908 * 300.16287 * 29 27 15 49 49 H 1.09003 * 109.47217 * 60.15591 * 29 27 15 50 50 H 1.08997 * 109.47345 * 180.15799 * 29 27 15 51 51 H 1.08996 * 109.58815 * 353.11672 * 30 12 10 52 52 H 1.08997 * 109.58714 * 113.40714 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.6373 -0.3310 2.4332 6 6 2.0711 -0.9468 3.5153 7 7 2.9113 -1.9615 3.4550 8 6 3.3532 -2.4101 2.2933 9 6 2.9242 -1.7827 1.1179 10 6 3.3951 -2.2441 -0.2053 11 8 3.9098 -1.4571 -0.9755 12 7 3.2537 -3.5373 -0.5576 13 6 2.7206 -4.5191 0.3965 14 6 1.5434 -5.2513 -0.2553 15 6 1.9964 -5.8519 -1.5880 16 1 2.8265 -6.5367 -1.4143 17 6 0.8327 -6.6135 -2.2257 18 7 0.4783 -7.7584 -1.3834 19 6 -0.5423 -8.5922 -1.7553 20 1 -1.0863 -8.4055 -2.6694 21 6 -0.8784 -9.6769 -0.9568 22 7 -1.8597 -10.4780 -1.3141 23 14 0.0620 -9.9994 0.6247 24 1 -0.5978 -9.2854 1.7472 25 1 0.0742 -11.4577 0.9046 26 1 1.4569 -9.5115 0.4794 27 6 2.4481 -4.7313 -2.5273 28 1 1.6260 -4.0324 -2.6823 29 6 2.8697 -5.3298 -3.8708 30 6 3.6355 -3.9931 -1.9012 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 1.7274 -0.6094 4.4821 39 1 4.0378 -3.2443 2.2516 40 1 3.4990 -5.2368 0.6557 41 1 2.3792 -4.0065 1.2959 42 1 0.7297 -4.5477 -0.4312 43 1 1.1995 -6.0479 0.4045 44 1 -0.0277 -5.9508 -2.3187 45 1 1.1276 -6.9667 -3.2138 46 1 0.9671 -7.9264 -0.5625 47 1 -2.0943 -11.2361 -0.7563 48 1 3.6909 -6.0294 -3.7151 49 1 2.0246 -5.8549 -4.3159 50 1 3.1940 -4.5315 -4.5384 51 1 3.8977 -3.1335 -2.5179 52 1 4.4901 -4.6659 -1.8296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185698257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:54 Heat of formation + Delta-G solvation = -4.446590 kcal Electronic energy + Delta-G solvation = -31746.345712 eV Core-core repulsion = 27745.024776 eV Total energy + Delta-G solvation = -4001.320937 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.64602 -41.07551 -39.31120 -37.25520 -36.65999 -35.24710 -34.16059 -33.61280 -32.66935 -32.38877 -28.75306 -28.13464 -28.01641 -26.38394 -25.86266 -25.06307 -23.81394 -22.73630 -21.96740 -21.48570 -20.56745 -19.63902 -19.12122 -18.35592 -17.79694 -17.40163 -16.67683 -16.36473 -16.12477 -15.82446 -15.72447 -15.58136 -15.40796 -15.11081 -14.95148 -14.68771 -14.57971 -14.48446 -14.17411 -14.02022 -13.97487 -13.28900 -13.18151 -13.13428 -12.95297 -12.91758 -12.80894 -12.68057 -12.57952 -12.36459 -12.18722 -12.02547 -11.97048 -11.85151 -11.71181 -11.64834 -11.43622 -11.27168 -11.05737 -10.94048 -10.62078 -10.40146 -9.76752 -9.27119 -8.02306 -5.35669 -0.55912 -0.14917 1.35643 1.37065 1.42030 1.49556 1.78898 2.49073 2.55925 2.84137 3.02127 3.14630 3.22093 3.29225 3.52207 3.65021 3.71256 3.78286 3.90185 3.98737 4.02451 4.08750 4.10495 4.21758 4.31994 4.36671 4.46040 4.54177 4.58642 4.65451 4.68806 4.72518 4.76125 4.80738 4.83321 4.86939 4.96022 4.99949 5.06139 5.06717 5.13241 5.18479 5.22838 5.23562 5.30971 5.32562 5.44049 5.55979 5.73242 5.76601 6.16345 6.21653 6.86772 6.88790 7.09118 7.84968 8.05158 9.19592 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011903 B = 0.003096 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.833839 B = 9042.048107 C = 9926.445948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.056 4.056 3 C -0.128 4.128 4 C 0.222 3.778 5 N -0.523 5.523 6 C 0.311 3.689 7 N -0.532 5.532 8 C 0.186 3.814 9 C -0.248 4.248 10 C 0.575 3.425 11 O -0.556 6.556 12 N -0.595 5.595 13 C 0.104 3.896 14 C -0.125 4.125 15 C -0.083 4.083 16 H 0.083 0.917 17 C 0.159 3.841 18 N -0.754 5.754 19 C -0.234 4.234 20 H 0.052 0.948 21 C -0.066 4.066 22 N -0.987 5.987 23 Si 0.955 3.045 24 H -0.277 1.277 25 H -0.298 1.298 26 H -0.244 1.244 27 C -0.087 4.087 28 H 0.065 0.935 29 C -0.146 4.146 30 C 0.122 3.878 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.232 0.768 39 H 0.196 0.804 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.013 0.987 45 H 0.032 0.968 46 H 0.367 0.633 47 H 0.258 0.742 48 H 0.065 0.935 49 H 0.053 0.947 50 H 0.069 0.931 51 H 0.090 0.910 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.161 22.689 6.537 27.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.076 4.076 3 C -0.186 4.186 4 C 0.076 3.924 5 N -0.237 5.237 6 C 0.025 3.975 7 N -0.246 5.246 8 C 0.019 3.981 9 C -0.256 4.256 10 C 0.362 3.638 11 O -0.435 6.435 12 N -0.326 5.326 13 C -0.018 4.018 14 C -0.164 4.164 15 C -0.101 4.101 16 H 0.101 0.899 17 C 0.033 3.967 18 N -0.401 5.401 19 C -0.366 4.366 20 H 0.070 0.930 21 C -0.258 4.258 22 N -0.637 5.637 23 Si 0.782 3.218 24 H -0.203 1.203 25 H -0.225 1.225 26 H -0.168 1.168 27 C -0.107 4.107 28 H 0.083 0.917 29 C -0.203 4.203 30 C 0.000 4.000 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.248 0.752 39 H 0.212 0.788 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.031 0.969 45 H 0.049 0.951 46 H 0.201 0.799 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.072 0.928 50 H 0.088 0.912 51 H 0.108 0.892 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.955 23.357 6.891 28.067 hybrid contribution 0.037 -1.179 -0.044 1.180 sum 13.992 22.179 6.847 27.102 Atomic orbital electron populations 1.21751 0.92129 1.01799 1.03609 1.20349 0.97557 0.97505 0.92156 1.21664 1.00462 0.93125 1.03367 1.21972 0.87533 0.88367 0.94533 1.68336 1.26051 1.30709 0.98587 1.25892 0.86973 0.86159 0.98518 1.68565 1.13172 1.14641 1.28214 1.23839 0.93045 0.95421 0.85800 1.21587 1.05388 1.02122 0.96458 1.17902 0.78213 0.81968 0.85691 1.90780 1.44992 1.54376 1.53370 1.48098 1.62248 1.07160 1.15055 1.22102 0.96804 0.91391 0.91478 1.21885 0.97631 0.99757 0.97087 1.21303 0.97573 0.96503 0.94761 0.89873 1.20876 0.94869 0.87346 0.93632 1.42686 1.39874 1.30837 1.26664 1.19025 1.07877 1.04486 1.05168 0.93036 1.25559 0.99717 0.97639 1.02847 1.69895 1.33681 1.18941 1.41226 0.85408 0.79915 0.76792 0.79716 1.20320 1.22465 1.16825 1.21350 0.97729 0.96163 0.95452 0.91651 1.21810 1.01877 1.01236 0.95392 1.21791 0.96888 0.99658 0.81634 0.91172 0.90349 0.93793 0.89983 0.93604 0.90273 0.91492 0.75154 0.78771 0.88009 0.89456 0.92547 0.90953 0.96935 0.95056 0.79916 0.93373 0.91558 0.92782 0.91188 0.89173 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.06 71.98 0.65 -1.73 16 2 C -0.06 -1.12 2.91 -11.54 -0.03 -1.15 16 3 C -0.13 -2.23 9.15 71.98 0.66 -1.57 16 4 C 0.22 4.69 5.52 42.91 0.24 4.93 16 5 N -0.52 -10.19 9.99 -187.07 -1.87 -12.06 16 6 C 0.31 5.05 12.27 180.84 2.22 7.27 16 7 N -0.53 -9.49 10.42 -198.97 -2.07 -11.56 16 8 C 0.19 3.18 8.75 85.07 0.74 3.92 16 9 C -0.25 -5.08 4.90 -19.91 -0.10 -5.17 16 10 C 0.58 12.86 6.32 86.78 0.55 13.41 16 11 O -0.56 -15.42 15.09 -3.88 -0.06 -15.48 16 12 N -0.59 -11.44 2.97 -822.33 -2.44 -13.89 16 13 C 0.10 1.81 5.58 86.36 0.48 2.29 16 14 C -0.13 -2.95 5.25 30.67 0.16 -2.79 16 15 C -0.08 -2.07 1.73 -10.77 -0.02 -2.09 16 16 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 17 C 0.16 5.63 5.41 86.38 0.47 6.10 16 18 N -0.75 -33.58 5.12 -343.46 -1.76 -35.34 16 19 C -0.23 -13.22 10.47 84.03 0.88 -12.34 16 20 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 21 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 22 N -0.99 -63.10 13.97 21.65 0.30 -62.79 16 23 Si 0.96 43.95 27.74 68.60 1.90 45.86 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.24 -9.78 6.52 99.48 0.65 -9.13 16 27 C -0.09 -1.81 2.41 -10.71 -0.03 -1.84 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 C -0.15 -2.81 8.82 71.98 0.63 -2.17 16 30 C 0.12 2.24 5.70 86.36 0.49 2.73 16 31 H 0.07 1.21 7.98 -2.39 -0.02 1.19 16 32 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.89 5.78 -2.39 -0.01 1.87 16 35 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.23 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.20 2.28 7.42 -2.91 -0.02 2.26 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 1.43 4.73 -2.38 -0.01 1.42 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.90 7.15 -2.38 -0.02 1.88 16 44 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.03 1.14 6.14 -2.39 -0.01 1.13 16 46 H 0.37 15.20 4.71 -92.71 -0.44 14.76 16 47 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 48 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.05 1.23 6.30 -2.39 -0.02 1.22 16 50 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.09 1.79 7.03 -2.39 -0.02 1.78 16 52 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -72.98 403.31 2.90 -70.08 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.43 Total: 28.80 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 8.47 Total: 6.39 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -7.84 Total: -135.65 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.06 Total: -15.48 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.90 Total: 45.86 kcal Total: -72.98 2.90 -70.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185698257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.635 kcal (2) G-P(sol) polarization free energy of solvation -72.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds