Wall clock time and date at job start Wed Apr 1 2020 04:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49677 * 2 1 4 4 C 1.53187 * 109.49910 * 239.93892 * 2 1 3 5 5 N 1.46929 * 108.77870 * 185.37721 * 4 2 1 6 6 C 1.34774 * 120.63272 * 233.58380 * 5 4 2 7 7 O 1.21596 * 120.00030 * 7.19811 * 6 5 4 8 8 C 1.47409 * 119.99644 * 187.19415 * 6 5 4 9 9 N 1.31875 * 125.94017 * 6.82272 * 8 6 5 10 10 C 1.33372 * 109.15666 * 180.08428 * 9 8 6 11 11 C 1.34868 * 108.15589 * 359.55556 * 10 9 8 12 12 N 1.35671 * 107.37515 * 0.32493 * 11 10 9 13 13 C 1.46450 * 124.57567 * 179.86620 * 12 11 10 14 14 C 1.53277 * 108.75035 * 342.79103 * 13 12 11 15 15 C 1.53137 * 109.60688 * 50.52547 * 14 13 12 16 16 C 1.50767 * 128.32047 * 180.36865 * 11 10 9 17 17 C 1.46925 * 118.73487 * 53.86443 * 5 4 2 18 18 C 1.53630 * 108.53942 * 306.09097 * 17 5 4 19 19 C 1.53039 * 109.52446 * 120.08263 * 2 1 3 20 20 H 1.09003 * 109.45908 * 61.31666 * 19 2 1 21 21 C 1.52996 * 109.46119 * 301.35510 * 19 2 1 22 22 N 1.46497 * 109.47209 * 175.00223 * 21 19 2 23 23 C 1.36939 * 120.00277 * 179.97438 * 22 21 19 24 24 H 1.08000 * 119.99826 * 359.97438 * 23 22 21 25 25 C 1.38809 * 120.00395 * 179.97438 * 23 22 21 26 26 N 1.31620 * 119.99949 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00205 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46927 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47002 * 120.00032 * 27 25 23 30 30 H 1.48495 * 109.46991 * 239.99670 * 27 25 23 31 31 H 1.08999 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47205 * 300.05845 * 1 2 3 33 33 H 1.08998 * 109.46821 * 60.06174 * 1 2 3 34 34 H 1.09005 * 109.58700 * 65.59143 * 4 2 1 35 35 H 1.09001 * 109.58759 * 305.16965 * 4 2 1 36 36 H 1.08005 * 125.91803 * 179.80786 * 10 9 8 37 37 H 1.08998 * 109.58846 * 223.01474 * 13 12 11 38 38 H 1.08999 * 109.71101 * 102.65059 * 13 12 11 39 39 H 1.08996 * 109.45526 * 290.47573 * 14 13 12 40 40 H 1.09009 * 109.42226 * 170.54913 * 14 13 12 41 41 H 1.09008 * 109.51274 * 170.59412 * 15 14 13 42 42 H 1.09000 * 109.51332 * 50.44989 * 15 14 13 43 43 H 1.09004 * 109.72541 * 283.86192 * 16 11 10 44 44 H 1.08991 * 109.73198 * 44.50234 * 16 11 10 45 45 H 1.09003 * 109.58876 * 65.92228 * 17 5 4 46 46 H 1.08998 * 109.59020 * 186.35195 * 17 5 4 47 47 H 1.08997 * 109.63773 * 294.86295 * 18 17 5 48 48 H 1.09004 * 109.45827 * 174.74297 * 18 17 5 49 49 H 1.09010 * 109.47126 * 294.99971 * 21 19 2 50 50 H 1.08993 * 109.47082 * 54.99721 * 21 19 2 51 51 H 0.96998 * 119.99934 * 359.97438 * 22 21 19 52 52 H 0.96995 * 120.00662 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2498 5 7 3.5047 -0.8279 -1.1703 6 6 4.2807 -0.3848 -2.1791 7 8 3.7831 0.2242 -3.1066 8 6 5.7327 -0.6382 -2.1582 9 7 6.3750 -1.3882 -1.2840 10 6 7.6763 -1.3837 -1.5761 11 6 7.8587 -0.6172 -2.6707 12 7 6.6423 -0.1443 -3.0414 13 6 6.4068 0.7342 -4.1892 14 6 7.7404 1.3597 -4.6129 15 6 8.7953 0.2611 -4.7729 16 6 9.1463 -0.3082 -3.3916 17 6 4.1058 -1.4306 0.0274 18 6 3.5715 -0.6942 1.2653 19 6 2.0414 -0.7230 1.2481 20 1 1.6979 -1.7574 1.2350 21 6 1.5043 -0.0236 2.4984 22 7 1.8945 -0.7834 3.6886 23 6 1.5240 -0.3458 4.9322 24 1 0.9446 0.5597 5.0355 25 6 1.8932 -1.0660 6.0599 26 7 2.5989 -2.1699 5.9340 27 14 1.3873 -0.4694 7.7563 28 1 0.6048 0.7860 7.6264 29 1 0.5547 -1.5061 8.4176 30 1 2.6006 -0.2137 8.5733 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5147 0.8894 33 1 -0.3633 0.5129 -0.8905 34 1 1.7632 -0.1575 -2.1390 35 1 1.6057 -1.7213 -1.2983 36 1 8.4494 -1.9068 -1.0328 37 1 5.7066 1.5213 -3.9094 38 1 5.9950 0.1560 -5.0164 39 1 8.0670 2.0684 -3.8520 40 1 7.6115 1.8800 -5.5621 41 1 9.6907 0.6803 -5.2321 42 1 8.3998 -0.5342 -5.4046 43 1 9.7179 0.4269 -2.8250 44 1 9.7316 -1.2204 -3.5066 45 1 3.8350 -2.4851 0.0809 46 1 5.1902 -1.3315 -0.0187 47 1 3.9161 0.3398 1.2535 48 1 3.9346 -1.1883 2.1665 49 1 1.9186 0.9829 2.5579 50 1 0.4173 0.0336 2.4439 51 1 2.4152 -1.5965 3.5958 52 1 2.8573 -2.6730 6.7220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185709467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:51 Heat of formation + Delta-G solvation = 34.306358 kcal Electronic energy + Delta-G solvation = -31243.031507 eV Core-core repulsion = 27243.391024 eV Total energy + Delta-G solvation = -3999.640483 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.80661 -39.99779 -37.90359 -37.14512 -34.95239 -33.54889 -33.24294 -31.87797 -30.99327 -30.21452 -28.74608 -26.76626 -26.56161 -24.77668 -23.99372 -23.00494 -22.41320 -21.95158 -21.23601 -20.20104 -19.46578 -19.07838 -17.24099 -17.05491 -16.61843 -16.40173 -15.63184 -15.28127 -14.83427 -14.67804 -14.54474 -14.40295 -14.30092 -14.14953 -13.97864 -13.79704 -13.56799 -13.42427 -13.13693 -12.80114 -12.55623 -12.45867 -12.28779 -11.85005 -11.68766 -11.60564 -11.57978 -11.51295 -11.45054 -10.93389 -10.82882 -10.74797 -10.48397 -10.30539 -10.27512 -10.08958 -9.94776 -9.91463 -9.56449 -9.30391 -8.80019 -8.73022 -8.40628 -6.83265 -5.70628 -2.98204 1.19934 2.18074 2.40071 3.10058 3.28106 3.46835 3.52419 3.54650 4.00186 4.12386 4.14491 4.22531 4.35599 4.63865 4.78705 4.82301 4.91449 4.95570 5.01027 5.04498 5.15222 5.19025 5.26430 5.31572 5.37315 5.40566 5.46069 5.52818 5.58609 5.63652 5.64078 5.73155 5.81403 5.89780 5.98865 6.00848 6.07777 6.14799 6.25749 6.29414 6.38644 6.40558 6.51499 6.60611 6.63335 6.76400 6.86546 6.95180 7.03943 7.33032 7.61245 7.76179 8.05359 8.48846 9.59792 10.19422 10.54110 11.52474 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002427 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.122558 B =11533.469972 C =12790.213704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.072 0.928 4 C 0.119 3.881 5 N -0.580 5.580 6 C 0.604 3.396 7 O -0.553 6.553 8 C 0.151 3.849 9 N -0.437 5.437 10 C -0.023 4.023 11 C -0.002 4.002 12 N -0.409 5.409 13 C 0.104 3.896 14 C -0.137 4.137 15 C -0.127 4.127 16 C -0.048 4.048 17 C 0.073 3.927 18 C -0.122 4.122 19 C -0.091 4.091 20 H 0.072 0.928 21 C 0.157 3.843 22 N -0.731 5.731 23 C -0.235 4.235 24 H 0.069 0.931 25 C -0.016 4.016 26 N -0.933 5.933 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.179 0.821 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.141 0.859 47 H 0.059 0.941 48 H 0.088 0.912 49 H 0.015 0.985 50 H 0.023 0.977 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.144 4.190 -25.436 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.003 4.003 5 N -0.310 5.310 6 C 0.390 3.610 7 O -0.432 6.432 8 C -0.108 4.108 9 N -0.159 5.159 10 C -0.174 4.174 11 C -0.122 4.122 12 N -0.091 5.091 13 C -0.018 4.018 14 C -0.174 4.174 15 C -0.165 4.165 16 C -0.086 4.086 17 C -0.049 4.049 18 C -0.160 4.160 19 C -0.110 4.110 20 H 0.090 0.910 21 C 0.029 3.971 22 N -0.376 5.376 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.212 4.212 26 N -0.583 5.583 27 Si 0.736 3.264 28 H -0.207 1.207 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.196 0.804 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.158 0.842 47 H 0.077 0.923 48 H 0.106 0.894 49 H 0.033 0.967 50 H 0.041 0.959 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.294 4.315 -25.286 28.028 hybrid contribution 0.224 0.338 0.515 0.655 sum 11.517 4.653 -24.771 27.711 Atomic orbital electron populations 1.21829 0.94372 1.02198 1.02001 1.21446 0.96033 0.99897 0.94190 0.90952 1.21796 0.78004 1.01117 0.99412 1.47817 1.06700 1.58573 1.17895 1.16507 0.82623 0.79178 0.82694 1.90767 1.74103 1.42246 1.36063 1.22491 0.92797 1.03022 0.92469 1.70213 1.05511 1.17613 1.22553 1.22157 0.93887 1.03823 0.97578 1.21323 0.87653 1.02950 1.00225 1.44945 1.06467 1.35289 1.22360 1.22139 0.99017 0.93875 0.86726 1.21959 0.93693 0.98625 1.03153 1.21688 0.99410 0.98394 0.96994 1.20313 0.91408 1.02355 0.94527 1.23012 1.03041 0.96509 0.82349 1.21997 0.95410 1.00892 0.97747 1.21373 0.95275 1.00037 0.94270 0.91002 1.20750 0.96516 0.94033 0.85763 1.42391 1.65323 1.29036 1.00825 1.19272 1.27381 1.06102 0.83881 0.91296 1.24722 1.01081 0.97605 0.97745 1.69664 1.42918 1.17318 1.28350 0.86139 0.77622 0.77706 0.84890 1.20650 1.21944 1.21942 0.92475 0.91278 0.93066 0.89230 0.91120 0.80423 0.87946 0.89158 0.90589 0.89171 0.90224 0.91224 0.89501 0.88976 0.91497 0.84187 0.92265 0.89367 0.96698 0.95923 0.78251 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.82 37.16 0.33 -1.53 16 2 C -0.10 -1.35 2.41 -90.50 -0.22 -1.57 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 4 C 0.12 1.59 5.72 -3.71 -0.02 1.57 16 5 N -0.58 -8.46 2.97 -173.77 -0.52 -8.98 16 6 C 0.60 9.15 7.67 -12.53 -0.10 9.05 16 7 O -0.55 -8.96 14.78 5.28 0.08 -8.88 16 8 C 0.15 2.11 7.53 -154.85 -1.17 0.94 16 9 N -0.44 -6.04 7.68 -11.44 -0.09 -6.13 16 10 C -0.02 -0.25 11.82 -18.08 -0.21 -0.46 16 11 C 0.00 -0.02 6.57 -82.06 -0.54 -0.56 16 12 N -0.41 -4.61 3.14 -110.07 -0.35 -4.96 16 13 C 0.10 0.90 6.04 -3.93 -0.02 0.88 16 14 C -0.14 -0.74 5.93 -26.52 -0.16 -0.90 16 15 C -0.13 -0.59 5.96 -26.41 -0.16 -0.75 16 16 C -0.05 -0.27 6.31 -27.60 -0.17 -0.44 16 17 C 0.07 1.08 6.12 -3.48 -0.02 1.06 16 18 C -0.12 -2.04 5.26 -26.38 -0.14 -2.18 16 19 C -0.09 -1.51 1.73 -90.58 -0.16 -1.67 16 20 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 21 C 0.16 3.22 5.41 -4.05 -0.02 3.20 16 22 N -0.73 -18.74 5.32 -59.91 -0.32 -19.06 16 23 C -0.23 -6.69 9.99 -15.06 -0.15 -6.84 16 24 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 25 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 26 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 27 Si 0.90 22.78 29.55 -169.99 -5.02 17.75 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 30 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.94 6.31 -51.93 -0.33 0.62 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.10 0.99 7.43 -51.93 -0.39 0.61 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 40 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 42 H 0.07 0.36 8.12 -51.93 -0.42 -0.07 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.14 2.14 4.14 -62.17 -0.26 1.88 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.09 1.66 7.15 -51.93 -0.37 1.29 16 49 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 50 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 51 H 0.38 10.26 6.84 -40.82 -0.28 9.98 16 52 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -33.67 397.91 -11.13 -44.80 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -8.61 Total: 8.03 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -3.02 Total: -0.76 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -0.54 Total: -66.93 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.67 -11.13 -44.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185709467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.102 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds