Wall clock time and date at job start Wed Apr 1 2020 04:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49677 * 2 1 4 4 C 1.53187 * 109.49910 * 239.93892 * 2 1 3 5 5 N 1.46929 * 108.77870 * 185.37721 * 4 2 1 6 6 C 1.34774 * 120.63272 * 233.58380 * 5 4 2 7 7 O 1.21596 * 120.00030 * 7.19811 * 6 5 4 8 8 C 1.47409 * 119.99644 * 187.19415 * 6 5 4 9 9 N 1.31875 * 125.94017 * 6.82272 * 8 6 5 10 10 C 1.33372 * 109.15666 * 180.08428 * 9 8 6 11 11 C 1.34868 * 108.15589 * 359.55556 * 10 9 8 12 12 N 1.35671 * 107.37515 * 0.32493 * 11 10 9 13 13 C 1.46450 * 124.57567 * 179.86620 * 12 11 10 14 14 C 1.53277 * 108.75035 * 342.79103 * 13 12 11 15 15 C 1.53137 * 109.60688 * 50.52547 * 14 13 12 16 16 C 1.50767 * 128.32047 * 180.36865 * 11 10 9 17 17 C 1.46925 * 118.73487 * 53.86443 * 5 4 2 18 18 C 1.53630 * 108.53942 * 306.09097 * 17 5 4 19 19 C 1.53039 * 109.52446 * 120.08263 * 2 1 3 20 20 H 1.09003 * 109.45908 * 61.31666 * 19 2 1 21 21 C 1.52996 * 109.46119 * 301.35510 * 19 2 1 22 22 N 1.46497 * 109.47209 * 175.00223 * 21 19 2 23 23 C 1.36939 * 120.00277 * 179.97438 * 22 21 19 24 24 H 1.08000 * 119.99826 * 359.97438 * 23 22 21 25 25 C 1.38809 * 120.00395 * 179.97438 * 23 22 21 26 26 N 1.31620 * 119.99949 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00205 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46927 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47002 * 120.00032 * 27 25 23 30 30 H 1.48495 * 109.46991 * 239.99670 * 27 25 23 31 31 H 1.08999 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47205 * 300.05845 * 1 2 3 33 33 H 1.08998 * 109.46821 * 60.06174 * 1 2 3 34 34 H 1.09005 * 109.58700 * 65.59143 * 4 2 1 35 35 H 1.09001 * 109.58759 * 305.16965 * 4 2 1 36 36 H 1.08005 * 125.91803 * 179.80786 * 10 9 8 37 37 H 1.08998 * 109.58846 * 223.01474 * 13 12 11 38 38 H 1.08999 * 109.71101 * 102.65059 * 13 12 11 39 39 H 1.08996 * 109.45526 * 290.47573 * 14 13 12 40 40 H 1.09009 * 109.42226 * 170.54913 * 14 13 12 41 41 H 1.09008 * 109.51274 * 170.59412 * 15 14 13 42 42 H 1.09000 * 109.51332 * 50.44989 * 15 14 13 43 43 H 1.09004 * 109.72541 * 283.86192 * 16 11 10 44 44 H 1.08991 * 109.73198 * 44.50234 * 16 11 10 45 45 H 1.09003 * 109.58876 * 65.92228 * 17 5 4 46 46 H 1.08998 * 109.59020 * 186.35195 * 17 5 4 47 47 H 1.08997 * 109.63773 * 294.86295 * 18 17 5 48 48 H 1.09004 * 109.45827 * 174.74297 * 18 17 5 49 49 H 1.09010 * 109.47126 * 294.99971 * 21 19 2 50 50 H 1.08993 * 109.47082 * 54.99721 * 21 19 2 51 51 H 0.96998 * 119.99934 * 359.97438 * 22 21 19 52 52 H 0.96995 * 120.00662 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2498 5 7 3.5047 -0.8279 -1.1703 6 6 4.2807 -0.3848 -2.1791 7 8 3.7831 0.2242 -3.1066 8 6 5.7327 -0.6382 -2.1582 9 7 6.3750 -1.3882 -1.2840 10 6 7.6763 -1.3837 -1.5761 11 6 7.8587 -0.6172 -2.6707 12 7 6.6423 -0.1443 -3.0414 13 6 6.4068 0.7342 -4.1892 14 6 7.7404 1.3597 -4.6129 15 6 8.7953 0.2611 -4.7729 16 6 9.1463 -0.3082 -3.3916 17 6 4.1058 -1.4306 0.0274 18 6 3.5715 -0.6942 1.2653 19 6 2.0414 -0.7230 1.2481 20 1 1.6979 -1.7574 1.2350 21 6 1.5043 -0.0236 2.4984 22 7 1.8945 -0.7834 3.6886 23 6 1.5240 -0.3458 4.9322 24 1 0.9446 0.5597 5.0355 25 6 1.8932 -1.0660 6.0599 26 7 2.5989 -2.1699 5.9340 27 14 1.3873 -0.4694 7.7563 28 1 0.6048 0.7860 7.6264 29 1 0.5547 -1.5061 8.4176 30 1 2.6006 -0.2137 8.5733 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5147 0.8894 33 1 -0.3633 0.5129 -0.8905 34 1 1.7632 -0.1575 -2.1390 35 1 1.6057 -1.7213 -1.2983 36 1 8.4494 -1.9068 -1.0328 37 1 5.7066 1.5213 -3.9094 38 1 5.9950 0.1560 -5.0164 39 1 8.0670 2.0684 -3.8520 40 1 7.6115 1.8800 -5.5621 41 1 9.6907 0.6803 -5.2321 42 1 8.3998 -0.5342 -5.4046 43 1 9.7179 0.4269 -2.8250 44 1 9.7316 -1.2204 -3.5066 45 1 3.8350 -2.4851 0.0809 46 1 5.1902 -1.3315 -0.0187 47 1 3.9161 0.3398 1.2535 48 1 3.9346 -1.1883 2.1665 49 1 1.9186 0.9829 2.5579 50 1 0.4173 0.0336 2.4439 51 1 2.4152 -1.5965 3.5958 52 1 2.8573 -2.6730 6.7220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185709467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:49 Heat of formation + Delta-G solvation = 15.259355 kcal Electronic energy + Delta-G solvation = -31243.857447 eV Core-core repulsion = 27243.391024 eV Total energy + Delta-G solvation = -4000.466423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.65761 -41.17828 -39.19868 -37.77965 -36.57767 -35.04487 -33.94539 -33.46152 -32.01295 -31.74433 -29.60231 -28.35090 -27.56820 -25.74004 -25.32712 -24.38626 -23.39441 -22.85470 -22.67514 -21.31874 -20.55087 -19.90717 -19.13444 -18.21880 -17.71924 -17.30312 -16.82823 -16.53464 -16.20714 -15.77912 -15.57693 -15.34226 -15.26907 -15.11584 -15.04443 -14.91501 -14.80537 -14.51191 -14.42391 -14.12945 -14.00372 -13.77022 -13.13241 -13.06937 -12.94514 -12.89199 -12.81679 -12.71602 -12.14588 -12.09336 -12.01015 -11.94188 -11.90776 -11.89316 -11.69071 -11.63810 -11.36960 -11.19554 -10.93985 -10.81126 -10.39522 -9.82574 -9.35743 -8.95815 -7.93386 -5.21567 0.23559 1.30309 1.47102 1.47981 1.50888 1.58051 2.10334 2.24372 2.56728 3.08011 3.39650 3.47999 3.55147 3.66496 3.73908 3.77812 3.84024 3.87895 4.01548 4.11412 4.24309 4.25622 4.32625 4.34536 4.46511 4.50972 4.52025 4.61788 4.63734 4.68899 4.75566 4.79402 4.81931 4.85864 4.95321 4.97848 5.02470 5.09364 5.10990 5.12365 5.17776 5.24558 5.27001 5.33682 5.39982 5.46811 5.51209 5.56606 5.76928 5.92349 6.17413 6.29284 6.64020 6.97054 7.35365 8.11996 8.36166 9.30377 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002427 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.122558 B =11533.469972 C =12790.213704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.064 0.936 4 C 0.121 3.879 5 N -0.583 5.583 6 C 0.601 3.399 7 O -0.570 6.570 8 C 0.110 3.890 9 N -0.457 5.457 10 C -0.044 4.044 11 C 0.016 3.984 12 N -0.409 5.409 13 C 0.098 3.902 14 C -0.130 4.130 15 C -0.124 4.124 16 C -0.048 4.048 17 C 0.085 3.915 18 C -0.113 4.113 19 C -0.080 4.080 20 H 0.068 0.932 21 C 0.158 3.842 22 N -0.742 5.742 23 C -0.243 4.243 24 H 0.072 0.928 25 C -0.076 4.076 26 N -0.968 5.968 27 Si 0.972 3.028 28 H -0.268 1.268 29 H -0.292 1.292 30 H -0.293 1.293 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.201 0.799 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.069 0.931 46 H 0.141 0.859 47 H 0.049 0.951 48 H 0.062 0.938 49 H 0.008 0.992 50 H 0.030 0.970 51 H 0.375 0.625 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.222 4.959 -27.072 30.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.001 4.001 5 N -0.313 5.313 6 C 0.389 3.611 7 O -0.450 6.450 8 C -0.147 4.147 9 N -0.180 5.180 10 C -0.196 4.196 11 C -0.105 4.105 12 N -0.090 5.090 13 C -0.023 4.023 14 C -0.167 4.167 15 C -0.161 4.161 16 C -0.086 4.086 17 C -0.037 4.037 18 C -0.152 4.152 19 C -0.098 4.098 20 H 0.087 0.913 21 C 0.032 3.968 22 N -0.385 5.385 23 C -0.375 4.375 24 H 0.090 0.910 25 C -0.268 4.268 26 N -0.619 5.619 27 Si 0.801 3.199 28 H -0.192 1.192 29 H -0.219 1.219 30 H -0.220 1.220 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.218 0.782 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.131 0.869 45 H 0.087 0.913 46 H 0.158 0.842 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.026 0.974 50 H 0.048 0.952 51 H 0.207 0.793 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.335 5.121 -26.956 30.083 hybrid contribution -0.032 0.131 0.950 0.960 sum 12.303 5.252 -26.006 29.245 Atomic orbital electron populations 1.21793 0.92872 1.02765 1.02548 1.21344 0.97184 0.99037 0.93005 0.91715 1.21836 0.77509 1.01788 0.98929 1.47843 1.07170 1.58621 1.17687 1.16709 0.83348 0.78691 0.82398 1.90737 1.74666 1.43049 1.36580 1.22261 0.92664 1.05369 0.94404 1.70059 1.06998 1.17883 1.23061 1.22684 0.93398 1.04854 0.98695 1.22054 0.88495 1.00679 0.99274 1.45185 1.06529 1.35018 1.22310 1.22334 1.00935 0.93222 0.85844 1.21986 0.91934 0.98776 1.04044 1.21712 1.00077 0.97976 0.96380 1.20567 0.89372 1.03885 0.94772 1.22834 1.03059 0.96175 0.81624 1.21855 0.95509 1.00170 0.97661 1.21254 0.95054 0.99686 0.93854 0.91329 1.20878 0.96833 0.93438 0.85695 1.42579 1.65193 1.29120 1.01629 1.19647 1.26707 1.05975 0.85170 0.90969 1.25548 1.01711 0.98041 1.01503 1.69818 1.44386 1.18592 1.29093 0.85088 0.77119 0.77558 0.80089 1.19234 1.21911 1.22021 0.91901 0.92374 0.90851 0.88792 0.89830 0.78210 0.89579 0.89094 0.90732 0.86975 0.87568 0.91547 0.87935 0.86920 0.91284 0.84224 0.93234 0.91943 0.97378 0.95226 0.79287 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.82 71.98 0.63 -2.78 16 2 C -0.09 -2.39 2.41 -10.72 -0.03 -2.41 16 3 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 4 C 0.12 3.18 5.72 86.36 0.49 3.68 16 5 N -0.58 -17.25 2.97 -821.96 -2.44 -19.69 16 6 C 0.60 18.58 7.67 86.66 0.66 19.25 16 7 O -0.57 -18.74 14.78 -4.02 -0.06 -18.80 16 8 C 0.11 3.12 7.53 136.39 1.03 4.15 16 9 N -0.46 -12.81 7.68 -190.12 -1.46 -14.27 16 10 C -0.04 -0.95 11.82 83.68 0.99 0.04 16 11 C 0.02 0.28 6.57 41.21 0.27 0.55 16 12 N -0.41 -9.04 3.14 -502.16 -1.58 -10.61 16 13 C 0.10 1.62 6.04 86.48 0.52 2.15 16 14 C -0.13 -1.10 5.93 30.73 0.18 -0.92 16 15 C -0.12 -0.74 5.96 30.80 0.18 -0.56 16 16 C -0.05 -0.39 6.31 30.03 0.19 -0.20 16 17 C 0.09 2.61 6.12 86.51 0.53 3.14 16 18 C -0.11 -3.94 5.26 30.82 0.16 -3.78 16 19 C -0.08 -2.70 1.73 -10.77 -0.02 -2.72 16 20 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 21 C 0.16 6.58 5.41 86.38 0.47 7.05 16 22 N -0.74 -38.89 5.32 -343.46 -1.83 -40.72 16 23 C -0.24 -13.98 9.99 84.03 0.84 -13.14 16 24 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 25 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 26 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 27 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 29 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 30 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.53 6.31 -2.39 -0.02 1.51 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 2.44 7.00 -2.38 -0.02 2.42 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.09 1.70 7.43 -2.39 -0.02 1.69 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 40 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 42 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 43 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 44 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.14 4.43 4.14 -22.60 -0.09 4.34 16 47 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.06 2.49 7.15 -2.38 -0.02 2.47 16 49 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 50 H 0.03 1.22 6.14 -2.39 -0.01 1.20 16 51 H 0.37 20.74 6.84 -92.71 -0.63 20.11 16 52 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -73.86 397.91 2.73 -71.12 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.20 Total: 34.26 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 7.58 Total: 9.51 kcal Atomic # 7 Polarization: -138.25 SS G_CDS: -7.02 Total: -145.27 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.06 Total: -18.80 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -73.86 2.73 -71.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185709467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.384 kcal (2) G-P(sol) polarization free energy of solvation -73.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds