Wall clock time and date at job start Wed Apr 1 2020 04:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52305 * 2 1 4 4 C 1.53192 * 109.49629 * 239.91382 * 2 1 3 5 5 N 1.46926 * 108.77198 * 185.41663 * 4 2 1 6 6 C 1.34780 * 120.62876 * 233.58805 * 5 4 2 7 7 O 1.21562 * 119.99995 * 172.16364 * 6 5 4 8 8 C 1.47839 * 120.00114 * 352.16340 * 6 5 4 9 9 C 1.39529 * 119.63659 * 160.88811 * 8 6 5 10 10 C 1.38222 * 119.15492 * 179.97438 * 9 8 6 11 11 C 1.39446 * 118.43462 * 0.02562 * 10 9 8 12 12 N 1.39070 * 120.40423 * 180.02562 * 11 10 9 13 13 C 1.46501 * 119.99890 * 356.95469 * 12 11 10 14 14 C 1.46496 * 120.00079 * 176.94751 * 12 11 10 15 15 C 1.39463 * 119.19209 * 359.97438 * 11 10 9 16 16 N 1.31323 * 120.77957 * 359.72160 * 15 11 10 17 17 C 1.46929 * 118.74097 * 53.61057 * 5 4 2 18 18 C 1.53188 * 108.77270 * 306.39241 * 17 5 4 19 19 C 1.53034 * 109.31779 * 54.63579 * 18 17 5 20 20 H 1.08993 * 109.46232 * 58.63581 * 19 18 17 21 21 C 1.52999 * 109.46182 * 178.61377 * 19 18 17 22 22 N 1.46492 * 109.47168 * 294.99673 * 21 19 18 23 23 C 1.36933 * 120.00456 * 180.02562 * 22 21 19 24 24 H 1.08003 * 119.99337 * 359.97438 * 23 22 21 25 25 C 1.38814 * 120.00417 * 180.02562 * 23 22 21 26 26 N 1.31620 * 119.99789 * 179.97438 * 25 23 22 27 27 Si 1.86794 * 119.99986 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.47022 * 270.00271 * 27 25 23 29 29 H 1.48506 * 109.47229 * 29.99892 * 27 25 23 30 30 H 1.48496 * 109.47101 * 149.99817 * 27 25 23 31 31 H 1.08998 * 109.47276 * 299.92317 * 1 2 3 32 32 H 1.09000 * 109.47143 * 59.92114 * 1 2 3 33 33 H 1.09000 * 109.47203 * 179.91847 * 1 2 3 34 34 H 1.09001 * 109.58624 * 65.62933 * 4 2 1 35 35 H 1.09002 * 109.58843 * 305.20497 * 4 2 1 36 36 H 1.08002 * 120.42470 * 0.02609 * 9 8 6 37 37 H 1.08009 * 120.78345 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.47538 * 89.99925 * 13 12 11 39 39 H 1.08998 * 109.46830 * 209.99750 * 13 12 11 40 40 H 1.09002 * 109.47051 * 329.99457 * 13 12 11 41 41 H 1.09001 * 109.47426 * 354.55838 * 14 12 11 42 42 H 1.09000 * 109.47169 * 114.55346 * 14 12 11 43 43 H 1.09002 * 109.47760 * 234.55717 * 14 12 11 44 44 H 1.08003 * 119.61134 * 180.02562 * 15 11 10 45 45 H 1.09001 * 109.58424 * 186.60277 * 17 5 4 46 46 H 1.09000 * 109.69810 * 66.24896 * 17 5 4 47 47 H 1.09003 * 109.49627 * 294.67894 * 18 17 5 48 48 H 1.09004 * 109.52141 * 174.60671 * 18 17 5 49 49 H 1.09000 * 109.46703 * 174.99863 * 21 19 18 50 50 H 1.08996 * 109.46861 * 54.99972 * 21 19 18 51 51 H 0.97006 * 120.00311 * 0.02562 * 22 21 19 52 52 H 0.97003 * 119.99854 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8293 -1.1694 6 6 4.2811 -0.3866 -2.1782 7 8 5.4886 -0.3471 -2.0434 8 6 3.6645 0.0509 -3.4486 9 6 4.3872 0.8641 -4.3222 10 6 3.8012 1.2669 -5.5075 11 6 2.5022 0.8419 -5.7840 12 7 1.8735 1.2223 -6.9647 13 6 2.5502 2.1287 -7.8958 14 6 0.5345 0.7167 -7.2775 15 6 1.8416 0.0297 -4.8626 16 7 2.4306 -0.3393 -3.7484 17 6 4.1052 -1.4268 0.0310 18 6 3.5707 -0.6951 1.2661 19 6 2.0407 -0.7231 1.2485 20 1 1.6966 -1.7572 1.2352 21 6 1.5036 -0.0232 2.4985 22 7 1.8915 -0.7838 3.6888 23 6 1.5198 -0.3466 4.9321 24 1 0.9410 0.5594 5.0350 25 6 1.8879 -1.0671 6.0600 26 7 1.5310 -0.6464 7.2550 27 14 2.8896 -2.6337 5.8819 28 1 1.9733 -3.7941 5.7441 29 1 3.7501 -2.5365 4.6755 30 1 3.7417 -2.8157 7.0843 31 1 -0.3634 0.5126 0.8906 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0015 34 1 1.7638 -0.1581 -2.1389 35 1 1.6052 -1.7217 -1.2979 36 1 5.3920 1.1741 -4.0759 37 1 4.3365 1.8967 -6.2028 38 1 3.1349 1.5472 -8.6086 39 1 1.8076 2.7198 -8.4317 40 1 3.2114 2.7934 -7.3398 41 1 0.2362 -0.0122 -6.5239 42 1 -0.1744 1.5446 -7.2827 43 1 0.5455 0.2415 -8.2584 44 1 0.8355 -0.3037 -5.0701 45 1 5.1895 -1.3247 -0.0136 46 1 3.8396 -2.4824 0.0881 47 1 3.9158 0.3388 1.2541 48 1 3.9333 -1.1892 2.1675 49 1 0.4166 0.0356 2.4431 50 1 1.9193 0.9826 2.5585 51 1 2.4117 -1.5974 3.5963 52 1 1.7878 -1.1501 8.0432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185761906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:01 Heat of formation + Delta-G solvation = 40.947519 kcal Electronic energy + Delta-G solvation = -30801.087960 eV Core-core repulsion = 26801.735460 eV Total energy + Delta-G solvation = -3999.352500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.13127 -39.77574 -38.05087 -37.16817 -35.05680 -33.34361 -32.78754 -32.12858 -31.14029 -30.37772 -29.03766 -27.33502 -26.50425 -25.97695 -23.89295 -23.45222 -22.78132 -21.74926 -21.14351 -20.22750 -19.45505 -17.94866 -17.69581 -17.37076 -16.84016 -16.02903 -15.81578 -15.31608 -15.24420 -14.75487 -14.72750 -14.57926 -14.31506 -14.05143 -13.90412 -13.66082 -13.41623 -13.20712 -13.16153 -12.97963 -12.77788 -12.69335 -12.63464 -12.33187 -12.25632 -11.84744 -11.76172 -11.55892 -11.27857 -10.89013 -10.82692 -10.77438 -10.42183 -10.26987 -10.20416 -10.16513 -9.96078 -9.93078 -9.54095 -9.23246 -8.81947 -8.50066 -7.92601 -7.14498 -5.71127 -3.05479 0.59534 0.91355 2.42136 2.65953 3.01456 3.41946 3.44683 3.49743 3.61734 3.96100 4.26146 4.28414 4.48730 4.55948 4.64570 4.69907 4.75255 4.84446 4.90423 4.96426 5.01702 5.06656 5.08750 5.10440 5.24278 5.33789 5.44304 5.49321 5.53897 5.59697 5.63445 5.71326 5.73011 5.86033 5.90435 5.95391 5.99843 6.07672 6.15927 6.26564 6.29112 6.35911 6.46312 6.46963 6.52110 6.68024 6.76120 6.82997 6.92654 7.41212 7.55790 8.06169 8.18290 8.48306 9.28108 10.00755 10.21294 11.47541 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.002231 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.336795 B =12548.674015 C =13323.340958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.070 0.930 4 C 0.103 3.897 5 N -0.590 5.590 6 C 0.576 3.424 7 O -0.547 6.547 8 C 0.014 3.986 9 C -0.055 4.055 10 C -0.171 4.171 11 C 0.188 3.812 12 N -0.624 5.624 13 C 0.088 3.912 14 C 0.084 3.916 15 C 0.019 3.981 16 N -0.404 5.404 17 C 0.109 3.891 18 C -0.126 4.126 19 C -0.093 4.093 20 H 0.071 0.929 21 C 0.161 3.839 22 N -0.755 5.755 23 C -0.240 4.240 24 H 0.089 0.911 25 C 0.001 3.999 26 N -0.936 5.936 27 Si 0.884 3.116 28 H -0.285 1.285 29 H -0.277 1.277 30 H -0.292 1.292 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.121 0.879 35 H 0.065 0.935 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.162 0.838 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.032 0.968 50 H 0.024 0.976 51 H 0.360 0.640 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 3.824 -35.943 36.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.089 0.911 4 C -0.020 4.020 5 N -0.321 5.321 6 C 0.364 3.636 7 O -0.424 6.424 8 C -0.125 4.125 9 C -0.076 4.076 10 C -0.201 4.201 11 C 0.081 3.919 12 N -0.333 5.333 13 C -0.055 4.055 14 C -0.058 4.058 15 C -0.147 4.147 16 N -0.115 5.115 17 C -0.013 4.013 18 C -0.164 4.164 19 C -0.112 4.112 20 H 0.089 0.911 21 C 0.034 3.966 22 N -0.401 5.401 23 C -0.370 4.370 24 H 0.107 0.893 25 C -0.194 4.194 26 N -0.584 5.584 27 Si 0.715 3.285 28 H -0.212 1.212 29 H -0.203 1.203 30 H -0.218 1.218 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.157 0.843 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.179 0.821 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.050 0.950 50 H 0.042 0.958 51 H 0.193 0.807 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.617 3.495 -35.250 35.428 hybrid contribution 1.024 -0.583 -0.550 1.300 sum 0.407 2.912 -35.800 35.920 Atomic orbital electron populations 1.21807 0.94386 1.02124 1.01918 1.21524 0.96092 0.99895 0.94521 0.91120 1.22516 0.78120 1.01685 0.99655 1.47919 1.07683 1.59160 1.17353 1.17793 0.85963 0.77221 0.82653 1.90765 1.13874 1.55838 1.81959 1.20780 0.91831 1.02757 0.97145 1.21838 1.00467 0.93423 0.91878 1.21071 0.94188 1.05461 0.99334 1.19098 0.92413 0.93319 0.87035 1.46264 1.17664 1.50405 1.18977 1.21729 0.97961 0.93019 0.92795 1.21824 0.82483 0.99726 1.01817 1.22544 1.01081 1.00560 0.90518 1.67572 1.08819 1.18857 1.16211 1.21730 0.99394 0.96537 0.83624 1.21934 0.95884 1.01467 0.97105 1.21406 0.94814 1.00147 0.94874 0.91107 1.20740 0.97105 0.94083 0.84681 1.42742 1.66071 1.28661 1.02638 1.19067 1.28114 1.07816 0.81985 0.89335 1.24674 1.00812 0.98774 0.95135 1.69707 1.51139 1.40586 0.97012 0.86544 0.80447 0.84670 0.76856 1.21153 1.20285 1.21810 0.91392 0.93099 0.92526 0.86167 0.91637 0.83654 0.84285 0.92823 0.90984 0.91008 0.90024 0.92222 0.91961 0.82146 0.89184 0.91477 0.91489 0.90102 0.95018 0.95844 0.80724 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.82 37.16 0.33 -1.38 16 2 C -0.10 -1.33 2.41 -90.50 -0.22 -1.54 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C 0.10 1.27 5.06 -3.71 -0.02 1.25 16 5 N -0.59 -8.34 2.97 -173.88 -0.52 -8.85 16 6 C 0.58 8.59 7.59 -12.33 -0.09 8.50 16 7 O -0.55 -9.53 15.90 5.31 0.08 -9.45 16 8 C 0.01 0.17 6.37 -83.02 -0.53 -0.36 16 9 C -0.05 -0.56 9.61 -39.11 -0.38 -0.93 16 10 C -0.17 -1.33 9.26 -39.14 -0.36 -1.69 16 11 C 0.19 1.40 6.56 -83.67 -0.55 0.85 16 12 N -0.62 -3.19 3.39 -187.40 -0.64 -3.82 16 13 C 0.09 0.27 10.18 59.85 0.61 0.88 16 14 C 0.08 0.25 10.61 59.84 0.63 0.89 16 15 C 0.02 0.15 10.45 -17.31 -0.18 -0.03 16 16 N -0.40 -4.40 6.53 -9.63 -0.06 -4.46 16 17 C 0.11 1.58 6.44 -3.71 -0.02 1.56 16 18 C -0.13 -2.00 5.25 -26.62 -0.14 -2.14 16 19 C -0.09 -1.47 1.73 -90.58 -0.16 -1.63 16 20 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 21 C 0.16 3.17 5.41 -4.05 -0.02 3.14 16 22 N -0.76 -18.29 5.12 -59.92 -0.31 -18.60 16 23 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 24 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 25 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 26 N -0.94 -29.96 13.97 55.49 0.78 -29.19 16 27 Si 0.88 22.60 27.74 -169.99 -4.71 17.88 16 28 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16 30 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 31 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.12 1.42 4.44 -58.42 -0.26 1.16 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.15 1.42 7.75 -52.49 -0.41 1.02 16 37 H 0.14 0.74 6.33 -52.48 -0.33 0.41 16 38 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.07 0.12 8.07 -51.93 -0.42 -0.30 16 40 H 0.07 0.20 6.35 -51.93 -0.33 -0.13 16 41 H 0.08 0.21 5.35 -51.93 -0.28 -0.07 16 42 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.16 0.91 5.78 -52.48 -0.30 0.61 16 45 H 0.09 1.37 7.00 -51.93 -0.36 1.00 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.08 1.41 7.15 -51.93 -0.37 1.03 16 49 H 0.03 0.63 6.14 -51.93 -0.32 0.31 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.36 8.49 4.71 -40.82 -0.19 8.30 16 52 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -35.53 399.39 -8.85 -44.39 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.14 Total: 5.86 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.35 Total: 0.21 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -0.75 Total: -64.92 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.88 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.53 -8.85 -44.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185761906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.336 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds