Wall clock time and date at job start Wed Apr 1 2020 04:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52305 * 2 1 4 4 C 1.53192 * 109.49629 * 239.91382 * 2 1 3 5 5 N 1.46926 * 108.77198 * 185.41663 * 4 2 1 6 6 C 1.34780 * 120.62876 * 233.58805 * 5 4 2 7 7 O 1.21562 * 119.99995 * 172.16364 * 6 5 4 8 8 C 1.47839 * 120.00114 * 352.16340 * 6 5 4 9 9 C 1.39529 * 119.63659 * 160.88811 * 8 6 5 10 10 C 1.38222 * 119.15492 * 179.97438 * 9 8 6 11 11 C 1.39446 * 118.43462 * 0.02562 * 10 9 8 12 12 N 1.39070 * 120.40423 * 180.02562 * 11 10 9 13 13 C 1.46501 * 119.99890 * 356.95469 * 12 11 10 14 14 C 1.46496 * 120.00079 * 176.94751 * 12 11 10 15 15 C 1.39463 * 119.19209 * 359.97438 * 11 10 9 16 16 N 1.31323 * 120.77957 * 359.72160 * 15 11 10 17 17 C 1.46929 * 118.74097 * 53.61057 * 5 4 2 18 18 C 1.53188 * 108.77270 * 306.39241 * 17 5 4 19 19 C 1.53034 * 109.31779 * 54.63579 * 18 17 5 20 20 H 1.08993 * 109.46232 * 58.63581 * 19 18 17 21 21 C 1.52999 * 109.46182 * 178.61377 * 19 18 17 22 22 N 1.46492 * 109.47168 * 294.99673 * 21 19 18 23 23 C 1.36933 * 120.00456 * 180.02562 * 22 21 19 24 24 H 1.08003 * 119.99337 * 359.97438 * 23 22 21 25 25 C 1.38814 * 120.00417 * 180.02562 * 23 22 21 26 26 N 1.31620 * 119.99789 * 179.97438 * 25 23 22 27 27 Si 1.86794 * 119.99986 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.47022 * 270.00271 * 27 25 23 29 29 H 1.48506 * 109.47229 * 29.99892 * 27 25 23 30 30 H 1.48496 * 109.47101 * 149.99817 * 27 25 23 31 31 H 1.08998 * 109.47276 * 299.92317 * 1 2 3 32 32 H 1.09000 * 109.47143 * 59.92114 * 1 2 3 33 33 H 1.09000 * 109.47203 * 179.91847 * 1 2 3 34 34 H 1.09001 * 109.58624 * 65.62933 * 4 2 1 35 35 H 1.09002 * 109.58843 * 305.20497 * 4 2 1 36 36 H 1.08002 * 120.42470 * 0.02609 * 9 8 6 37 37 H 1.08009 * 120.78345 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.47538 * 89.99925 * 13 12 11 39 39 H 1.08998 * 109.46830 * 209.99750 * 13 12 11 40 40 H 1.09002 * 109.47051 * 329.99457 * 13 12 11 41 41 H 1.09001 * 109.47426 * 354.55838 * 14 12 11 42 42 H 1.09000 * 109.47169 * 114.55346 * 14 12 11 43 43 H 1.09002 * 109.47760 * 234.55717 * 14 12 11 44 44 H 1.08003 * 119.61134 * 180.02562 * 15 11 10 45 45 H 1.09001 * 109.58424 * 186.60277 * 17 5 4 46 46 H 1.09000 * 109.69810 * 66.24896 * 17 5 4 47 47 H 1.09003 * 109.49627 * 294.67894 * 18 17 5 48 48 H 1.09004 * 109.52141 * 174.60671 * 18 17 5 49 49 H 1.09000 * 109.46703 * 174.99863 * 21 19 18 50 50 H 1.08996 * 109.46861 * 54.99972 * 21 19 18 51 51 H 0.97006 * 120.00311 * 0.02562 * 22 21 19 52 52 H 0.97003 * 119.99854 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8293 -1.1694 6 6 4.2811 -0.3866 -2.1782 7 8 5.4886 -0.3471 -2.0434 8 6 3.6645 0.0509 -3.4486 9 6 4.3872 0.8641 -4.3222 10 6 3.8012 1.2669 -5.5075 11 6 2.5022 0.8419 -5.7840 12 7 1.8735 1.2223 -6.9647 13 6 2.5502 2.1287 -7.8958 14 6 0.5345 0.7167 -7.2775 15 6 1.8416 0.0297 -4.8626 16 7 2.4306 -0.3393 -3.7484 17 6 4.1052 -1.4268 0.0310 18 6 3.5707 -0.6951 1.2661 19 6 2.0407 -0.7231 1.2485 20 1 1.6966 -1.7572 1.2352 21 6 1.5036 -0.0232 2.4985 22 7 1.8915 -0.7838 3.6888 23 6 1.5198 -0.3466 4.9321 24 1 0.9410 0.5594 5.0350 25 6 1.8879 -1.0671 6.0600 26 7 1.5310 -0.6464 7.2550 27 14 2.8896 -2.6337 5.8819 28 1 1.9733 -3.7941 5.7441 29 1 3.7501 -2.5365 4.6755 30 1 3.7417 -2.8157 7.0843 31 1 -0.3634 0.5126 0.8906 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0015 34 1 1.7638 -0.1581 -2.1389 35 1 1.6052 -1.7217 -1.2979 36 1 5.3920 1.1741 -4.0759 37 1 4.3365 1.8967 -6.2028 38 1 3.1349 1.5472 -8.6086 39 1 1.8076 2.7198 -8.4317 40 1 3.2114 2.7934 -7.3398 41 1 0.2362 -0.0122 -6.5239 42 1 -0.1744 1.5446 -7.2827 43 1 0.5455 0.2415 -8.2584 44 1 0.8355 -0.3037 -5.0701 45 1 5.1895 -1.3247 -0.0136 46 1 3.8396 -2.4824 0.0881 47 1 3.9158 0.3388 1.2541 48 1 3.9333 -1.1892 2.1675 49 1 0.4166 0.0356 2.4431 50 1 1.9193 0.9826 2.5585 51 1 2.4117 -1.5974 3.5963 52 1 1.7878 -1.1501 8.0432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185761906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:59 Heat of formation + Delta-G solvation = 18.083296 kcal Electronic energy + Delta-G solvation = -30802.079427 eV Core-core repulsion = 26801.735460 eV Total energy + Delta-G solvation = -4000.343967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.94350 -40.70401 -39.22116 -37.74126 -36.70626 -34.82784 -33.64390 -33.35254 -32.68688 -31.36190 -29.32606 -28.76998 -27.52616 -26.75003 -25.23290 -24.29500 -23.97202 -22.70127 -22.52119 -21.34163 -20.58922 -19.63154 -18.62651 -18.31440 -17.55286 -16.97387 -16.67529 -16.45167 -16.12216 -16.00241 -15.89636 -15.63804 -15.31185 -15.19237 -14.97468 -14.71459 -14.55743 -14.49875 -14.25078 -13.92720 -13.85161 -13.53432 -13.35192 -13.26426 -13.12097 -12.96058 -12.89186 -12.82107 -12.64846 -12.48601 -12.18719 -11.95584 -11.85693 -11.63071 -11.48795 -11.38393 -11.30937 -11.20895 -10.92491 -10.63419 -10.12407 -9.62609 -9.26576 -8.41915 -8.02408 -5.35080 -0.14932 0.28436 1.37513 1.40984 1.48214 1.71665 1.95570 2.07770 2.48545 2.85551 3.20326 3.28729 3.58619 3.62457 3.75221 3.79774 3.83354 3.93668 4.03840 4.11247 4.13758 4.25322 4.31158 4.43836 4.47608 4.54128 4.55603 4.64154 4.69929 4.72671 4.78325 4.82387 4.85088 4.85521 4.91354 4.98250 5.03831 5.05251 5.06935 5.09555 5.16774 5.19728 5.26084 5.40396 5.43712 5.57887 5.67485 5.76382 6.09160 6.21746 6.22268 6.39595 6.78569 7.08579 7.14156 7.85344 8.05152 9.19244 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.002231 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.336795 B =12548.674015 C =13323.340958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.060 0.940 4 C 0.110 3.890 5 N -0.594 5.594 6 C 0.570 3.430 7 O -0.585 6.585 8 C -0.022 4.022 9 C -0.059 4.059 10 C -0.173 4.173 11 C 0.198 3.802 12 N -0.618 5.618 13 C 0.079 3.921 14 C 0.075 3.925 15 C 0.016 3.984 16 N -0.414 5.414 17 C 0.114 3.886 18 C -0.120 4.120 19 C -0.083 4.083 20 H 0.078 0.922 21 C 0.160 3.840 22 N -0.756 5.756 23 C -0.232 4.232 24 H 0.054 0.946 25 C -0.066 4.066 26 N -0.984 5.984 27 Si 0.954 3.046 28 H -0.275 1.275 29 H -0.252 1.252 30 H -0.296 1.296 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.163 0.837 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.188 0.812 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.066 0.934 49 H 0.036 0.964 50 H 0.011 0.989 51 H 0.366 0.634 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 3.017 -39.972 40.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.079 0.921 4 C -0.012 4.012 5 N -0.324 5.324 6 C 0.360 3.640 7 O -0.466 6.466 8 C -0.159 4.159 9 C -0.081 4.081 10 C -0.203 4.203 11 C 0.088 3.912 12 N -0.325 5.325 13 C -0.063 4.063 14 C -0.066 4.066 15 C -0.151 4.151 16 N -0.125 5.125 17 C -0.008 4.008 18 C -0.158 4.158 19 C -0.102 4.102 20 H 0.096 0.904 21 C 0.034 3.966 22 N -0.402 5.402 23 C -0.363 4.363 24 H 0.072 0.928 25 C -0.257 4.257 26 N -0.635 5.635 27 Si 0.781 3.219 28 H -0.201 1.201 29 H -0.176 1.176 30 H -0.223 1.223 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.157 0.843 37 H 0.181 0.819 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.205 0.795 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.054 0.946 50 H 0.029 0.971 51 H 0.199 0.801 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.641 2.707 -39.361 39.488 hybrid contribution 1.191 -0.166 0.493 1.299 sum -0.451 2.541 -38.868 38.954 Atomic orbital electron populations 1.21765 0.92910 1.02784 1.02326 1.21469 0.97223 0.99052 0.93559 0.92125 1.22582 0.77001 1.02264 0.99367 1.48016 1.08400 1.58967 1.16985 1.18285 0.85651 0.76480 0.83608 1.90723 1.15475 1.57539 1.82864 1.20418 0.93148 1.05490 0.96802 1.21852 1.00272 0.93413 0.92577 1.21265 0.94598 1.05629 0.98801 1.19203 0.92196 0.92219 0.87568 1.46608 1.18261 1.49576 1.18052 1.21944 0.98668 0.93041 0.92658 1.22051 0.81468 1.00442 1.02678 1.23000 1.01970 1.00267 0.89873 1.67409 1.08304 1.19213 1.17565 1.21613 0.98805 0.97119 0.83294 1.21838 0.96028 1.00670 0.97301 1.21318 0.94502 1.00313 0.94045 0.90361 1.20886 0.97375 0.93477 0.84860 1.42738 1.65998 1.29174 1.02291 1.19038 1.26800 1.06418 0.84085 0.92763 1.25522 1.02734 1.02833 0.94658 1.69891 1.53139 1.42503 0.97970 0.85414 0.78987 0.79989 0.77465 1.20118 1.17632 1.22314 0.92921 0.90756 0.91722 0.85026 0.90615 0.84302 0.81944 0.92079 0.89215 0.90728 0.89536 0.90998 0.90644 0.79501 0.90304 0.89988 0.92875 0.91550 0.94569 0.97060 0.80088 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.82 71.98 0.63 -2.38 16 2 C -0.09 -2.34 2.41 -10.71 -0.03 -2.36 16 3 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.11 2.53 5.06 86.36 0.44 2.97 16 5 N -0.59 -16.53 2.97 -822.30 -2.44 -18.97 16 6 C 0.57 17.24 7.59 86.78 0.66 17.90 16 7 O -0.59 -21.22 15.90 -3.91 -0.06 -21.28 16 8 C -0.02 -0.52 6.37 41.85 0.27 -0.26 16 9 C -0.06 -1.19 9.61 22.58 0.22 -0.97 16 10 C -0.17 -2.36 9.26 22.56 0.21 -2.15 16 11 C 0.20 2.38 6.56 38.58 0.25 2.63 16 12 N -0.62 -4.04 3.39 -746.80 -2.53 -6.58 16 13 C 0.08 0.20 10.18 127.77 1.30 1.50 16 14 C 0.08 0.15 10.61 127.77 1.36 1.51 16 15 C 0.02 0.22 10.45 85.06 0.89 1.11 16 16 N -0.41 -8.30 6.53 -184.39 -1.20 -9.50 16 17 C 0.11 3.28 6.44 86.36 0.56 3.84 16 18 C -0.12 -3.81 5.25 30.67 0.16 -3.65 16 19 C -0.08 -2.54 1.73 -10.77 -0.02 -2.56 16 20 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 21 C 0.16 6.30 5.41 86.38 0.47 6.77 16 22 N -0.76 -36.53 5.12 -343.48 -1.76 -38.29 16 23 C -0.23 -13.72 10.47 84.03 0.88 -12.84 16 24 H 0.05 3.51 8.06 -2.91 -0.02 3.48 16 25 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 26 N -0.98 -64.64 13.97 21.65 0.30 -64.34 16 27 Si 0.95 46.75 27.74 68.60 1.90 48.65 16 28 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 29 H -0.25 -11.17 6.52 99.48 0.65 -10.52 16 30 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 31 H 0.05 1.30 6.29 -2.39 -0.02 1.28 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.13 2.85 4.44 -15.21 -0.07 2.79 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.14 2.83 7.75 -2.91 -0.02 2.81 16 37 H 0.16 1.31 6.33 -2.91 -0.02 1.30 16 38 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.09 -0.04 8.07 -2.39 -0.02 -0.06 16 40 H 0.07 0.18 6.35 -2.39 -0.02 0.16 16 41 H 0.09 0.10 5.35 -2.39 -0.01 0.09 16 42 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.19 1.41 5.78 -2.91 -0.02 1.40 16 45 H 0.08 2.45 7.00 -2.39 -0.02 2.44 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.07 2.28 7.15 -2.38 -0.02 2.27 16 49 H 0.04 1.42 6.14 -2.39 -0.01 1.41 16 50 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.37 16.80 4.71 -92.70 -0.44 16.37 16 52 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -79.40 399.39 3.29 -76.11 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.38 Total: 26.70 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 8.71 Total: 7.50 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -7.64 Total: -137.68 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.06 Total: -21.28 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.90 Total: 48.65 kcal Total: -79.40 3.29 -76.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185761906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.194 kcal (2) G-P(sol) polarization free energy of solvation -79.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds