Wall clock time and date at job start Wed Apr 1 2020 04:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.52024 * 2 1 4 4 C 1.53200 * 109.49482 * 120.07359 * 2 1 3 5 5 N 1.46924 * 108.77148 * 174.58815 * 4 2 1 6 6 C 1.34778 * 120.62812 * 126.41368 * 5 4 2 7 7 O 1.21556 * 119.99969 * 351.86234 * 6 5 4 8 8 C 1.47845 * 119.99902 * 171.85283 * 6 5 4 9 9 C 1.39530 * 119.63302 * 160.62068 * 8 6 5 10 10 C 1.38229 * 119.15412 * 179.77088 * 9 8 6 11 11 C 1.39453 * 118.43003 * 0.49932 * 10 9 8 12 12 N 1.39063 * 120.40131 * 179.72407 * 11 10 9 13 13 C 1.46500 * 119.99850 * 174.39096 * 12 11 10 14 14 C 1.46494 * 120.00048 * 354.39066 * 12 11 10 15 15 C 1.39470 * 119.19344 * 359.74538 * 11 10 9 16 16 N 1.31318 * 120.77814 * 0.02562 * 15 11 10 17 17 C 1.46926 * 118.74256 * 306.39131 * 5 4 2 18 18 C 1.53191 * 108.77247 * 53.60950 * 17 5 4 19 19 C 1.53034 * 109.50015 * 239.91457 * 2 1 3 20 20 H 1.09004 * 109.44889 * 298.69678 * 19 2 1 21 21 C 1.53002 * 109.46311 * 58.66126 * 19 2 1 22 22 N 1.46498 * 109.47098 * 185.07043 * 21 19 2 23 23 C 1.36941 * 119.99609 * 180.27921 * 22 21 19 24 24 H 1.07998 * 120.00333 * 359.72090 * 23 22 21 25 25 C 1.38807 * 119.99890 * 179.72201 * 23 22 21 26 26 N 1.31621 * 119.99842 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00255 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46950 * 60.00066 * 27 25 23 29 29 H 1.48490 * 109.47427 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47228 * 300.00523 * 27 25 23 31 31 H 1.09000 * 109.47026 * 180.08541 * 1 2 3 32 32 H 1.08996 * 109.47804 * 300.08480 * 1 2 3 33 33 H 1.08997 * 109.47347 * 60.08769 * 1 2 3 34 34 H 1.09001 * 109.58298 * 54.80082 * 4 2 1 35 35 H 1.09000 * 109.70436 * 294.44770 * 4 2 1 36 36 H 1.07996 * 120.42563 * 0.02887 * 9 8 6 37 37 H 1.07998 * 120.78652 * 180.24343 * 10 9 8 38 38 H 1.09000 * 109.47438 * 89.99636 * 13 12 11 39 39 H 1.09000 * 109.46889 * 209.99951 * 13 12 11 40 40 H 1.09001 * 109.47243 * 329.99904 * 13 12 11 41 41 H 1.09001 * 109.47517 * 354.57719 * 14 12 11 42 42 H 1.08999 * 109.47373 * 114.57765 * 14 12 11 43 43 H 1.09006 * 109.47254 * 234.57514 * 14 12 11 44 44 H 1.08003 * 119.61209 * 180.02562 * 15 11 10 45 45 H 1.08998 * 109.58368 * 293.82582 * 17 5 4 46 46 H 1.08990 * 109.58710 * 173.39858 * 17 5 4 47 47 H 1.09000 * 109.49634 * 185.41445 * 18 17 5 48 48 H 1.08993 * 109.52824 * 65.33553 * 18 17 5 49 49 H 1.09000 * 109.46987 * 65.06949 * 21 19 2 50 50 H 1.09005 * 109.46744 * 305.07242 * 21 19 2 51 51 H 0.96996 * 120.00652 * 359.97438 * 22 21 19 52 52 H 0.97006 * 119.99553 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7237 1.2498 5 7 3.5045 -0.8290 1.1698 6 6 4.2810 -0.3861 2.1785 7 8 3.7866 0.2377 3.0972 8 6 5.7340 -0.6591 2.1676 9 6 6.5870 0.1133 2.9566 10 6 7.9432 -0.1536 2.9425 11 6 8.4085 -1.1844 2.1266 12 7 9.7655 -1.4843 2.0766 13 6 10.2315 -2.6449 1.3137 14 6 10.7290 -0.6395 2.7866 15 6 7.4964 -1.9106 1.3612 16 7 6.2136 -1.6331 1.4021 17 6 4.1053 -1.4266 -0.0305 18 6 3.5709 -0.6951 -1.2658 19 6 2.0408 -0.7231 -1.2482 20 1 1.6968 -1.7574 -1.2348 21 6 1.5038 -0.0235 -2.4984 22 7 1.8918 -0.7844 -3.6886 23 6 1.5254 -0.3439 -4.9324 24 1 0.9466 0.5620 -5.0356 25 6 1.8980 -1.0617 -6.0605 26 7 2.6030 -2.1660 -5.9347 27 14 1.3977 -0.4613 -7.7571 28 1 1.9633 0.8919 -7.9900 29 1 1.9150 -1.3983 -8.7863 30 1 -0.0836 -0.4002 -7.8437 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8891 33 1 -0.3634 0.5124 -0.8907 34 1 1.6051 -1.7215 1.2982 35 1 1.7635 -0.1599 2.1403 36 1 6.1923 0.9069 3.5736 37 1 8.6268 0.4252 3.5458 38 1 10.4464 -2.3435 0.2885 39 1 11.1368 -3.0419 1.7731 40 1 9.4581 -3.4130 1.3120 41 1 10.2132 0.2211 3.2125 42 1 11.1969 -1.2146 3.5856 43 1 11.4940 -0.2964 2.0900 44 1 7.8494 -2.7107 0.7273 45 1 3.8375 -2.4817 -0.0863 46 1 5.1895 -1.3245 0.0141 47 1 3.9335 -1.1898 -2.1668 48 1 3.9159 0.3388 -1.2546 49 1 1.9194 0.9824 -2.5587 50 1 0.4167 0.0353 -2.4431 51 1 2.4120 -1.5978 -3.5960 52 1 2.8631 -2.6679 -6.7231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185761907.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:05 Heat of formation + Delta-G solvation = 36.174943 kcal Electronic energy + Delta-G solvation = -30736.218757 eV Core-core repulsion = 26736.659302 eV Total energy + Delta-G solvation = -3999.559455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.01218 -39.68137 -37.91668 -37.04522 -34.88458 -33.51867 -32.54183 -31.84730 -30.85318 -30.17294 -28.92178 -27.07254 -26.73589 -25.50007 -23.82282 -23.44601 -22.49598 -21.98127 -21.18345 -20.15980 -19.30201 -17.78090 -17.49049 -16.97748 -16.69125 -15.94494 -15.69429 -15.26253 -15.03590 -14.80818 -14.62311 -14.40989 -14.09009 -14.06048 -13.77719 -13.53064 -13.40829 -13.09407 -13.04961 -12.99101 -12.65330 -12.55384 -12.45627 -12.35313 -12.00346 -11.76310 -11.61553 -11.42430 -10.92360 -10.82383 -10.74827 -10.67684 -10.30441 -10.23538 -10.15779 -10.05615 -9.91478 -9.80982 -9.54415 -9.12599 -8.78501 -8.40010 -7.81574 -6.83218 -5.70761 -2.98095 0.70322 1.02742 2.53596 2.75252 3.11027 3.47506 3.51605 3.52742 3.73558 4.14111 4.31148 4.41841 4.57514 4.64102 4.69433 4.80868 4.83339 4.95594 5.04152 5.07585 5.11029 5.18559 5.19418 5.24356 5.40305 5.43692 5.58527 5.59918 5.63905 5.64317 5.78964 5.83839 5.87061 5.96736 6.05550 6.08235 6.12855 6.19528 6.32770 6.37667 6.44125 6.53225 6.57910 6.63411 6.68055 6.80025 6.85441 6.96537 7.06148 7.52042 7.67540 7.75248 8.26730 8.48959 9.59724 10.19610 10.54428 11.52267 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010573 B = 0.002606 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.591205 B =10742.072600 C =12921.167632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.072 0.928 4 C 0.117 3.883 5 N -0.590 5.590 6 C 0.577 3.423 7 O -0.551 6.551 8 C 0.013 3.987 9 C -0.056 4.056 10 C -0.173 4.173 11 C 0.188 3.812 12 N -0.624 5.624 13 C 0.087 3.913 14 C 0.085 3.915 15 C 0.023 3.977 16 N -0.402 5.402 17 C 0.096 3.904 18 C -0.127 4.127 19 C -0.089 4.089 20 H 0.071 0.929 21 C 0.156 3.844 22 N -0.731 5.731 23 C -0.235 4.235 24 H 0.068 0.932 25 C -0.016 4.016 26 N -0.935 5.935 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.161 0.839 45 H 0.066 0.934 46 H 0.120 0.880 47 H 0.086 0.914 48 H 0.058 0.942 49 H 0.015 0.985 50 H 0.023 0.977 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.725 0.545 21.230 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.005 4.005 5 N -0.320 5.320 6 C 0.365 3.635 7 O -0.430 6.430 8 C -0.125 4.125 9 C -0.078 4.078 10 C -0.203 4.203 11 C 0.081 3.919 12 N -0.334 5.334 13 C -0.056 4.056 14 C -0.058 4.058 15 C -0.143 4.143 16 N -0.113 5.113 17 C -0.026 4.026 18 C -0.166 4.166 19 C -0.108 4.108 20 H 0.089 0.911 21 C 0.029 3.971 22 N -0.376 5.376 23 C -0.367 4.367 24 H 0.086 0.914 25 C -0.211 4.211 26 N -0.584 5.584 27 Si 0.737 3.263 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.214 1.214 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.178 0.822 45 H 0.085 0.915 46 H 0.137 0.863 47 H 0.104 0.896 48 H 0.077 0.923 49 H 0.033 0.967 50 H 0.041 0.959 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.981 0.441 21.070 25.857 hybrid contribution 0.645 0.445 -0.658 1.023 sum 15.626 0.886 20.412 25.722 Atomic orbital electron populations 1.21829 0.94522 1.02113 1.01944 1.21442 0.95951 0.99914 0.94282 0.90987 1.21731 0.78840 1.00805 0.99169 1.47946 1.06603 1.59297 1.18159 1.17789 0.84973 0.78655 0.82106 1.90742 1.74307 1.41262 1.36641 1.20777 0.94466 0.97431 0.99863 1.21811 0.92271 0.97907 0.95781 1.21096 0.95863 1.00449 1.02885 1.19118 0.84941 0.94061 0.93766 1.46253 1.02754 1.30014 1.54342 1.21760 1.00553 0.87434 0.95838 1.21791 0.92384 0.95033 0.96580 1.22531 0.87932 1.01993 1.01798 1.67602 1.14457 1.14270 1.14961 1.22508 1.00853 0.96660 0.82561 1.21989 0.95720 1.00963 0.97880 1.21343 0.95097 1.00022 0.94321 0.91061 1.20761 0.96561 0.94013 0.85768 1.42378 1.65528 1.28843 1.00807 1.19192 1.27480 1.06125 0.83893 0.91397 1.24712 1.01075 0.97616 0.97714 1.69651 1.42885 1.17318 1.28526 0.86284 0.78019 0.77607 0.84388 1.21383 1.21747 1.21356 0.92547 0.93059 0.91394 0.91483 0.89331 0.83745 0.84225 0.92498 0.91032 0.90779 0.90282 0.92468 0.91988 0.82198 0.91541 0.86338 0.89550 0.92309 0.96701 0.95897 0.78281 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.82 37.16 0.33 -1.60 16 2 C -0.10 -1.40 2.41 -90.50 -0.22 -1.62 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.12 1.65 5.73 -3.71 -0.02 1.62 16 5 N -0.59 -8.81 2.97 -173.88 -0.52 -9.33 16 6 C 0.58 9.01 7.59 -12.33 -0.09 8.91 16 7 O -0.55 -9.70 15.91 5.32 0.08 -9.62 16 8 C 0.01 0.18 6.38 -83.02 -0.53 -0.35 16 9 C -0.06 -0.63 9.61 -39.10 -0.38 -1.00 16 10 C -0.17 -1.53 9.35 -39.13 -0.37 -1.90 16 11 C 0.19 1.67 6.55 -83.67 -0.55 1.12 16 12 N -0.62 -4.07 3.39 -187.39 -0.64 -4.70 16 13 C 0.09 0.40 10.10 59.85 0.60 1.00 16 14 C 0.09 0.36 10.59 59.84 0.63 0.99 16 15 C 0.02 0.24 10.33 -17.31 -0.18 0.06 16 16 N -0.40 -5.09 6.52 -9.63 -0.06 -5.15 16 17 C 0.10 1.41 5.77 -3.71 -0.02 1.39 16 18 C -0.13 -2.11 5.25 -26.61 -0.14 -2.25 16 19 C -0.09 -1.50 1.73 -90.58 -0.16 -1.66 16 20 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 21 C 0.16 3.23 5.41 -4.04 -0.02 3.21 16 22 N -0.73 -18.74 5.32 -59.91 -0.32 -19.06 16 23 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 24 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 25 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 26 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 27 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.95 6.29 -51.93 -0.33 0.63 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 36 H 0.14 1.51 7.76 -52.49 -0.41 1.10 16 37 H 0.14 0.86 5.93 -52.49 -0.31 0.54 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 40 H 0.07 0.32 6.46 -51.93 -0.34 -0.01 16 41 H 0.08 0.30 5.43 -51.93 -0.28 0.02 16 42 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 43 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.16 1.28 6.31 -52.48 -0.33 0.95 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.12 1.71 4.45 -58.28 -0.26 1.45 16 47 H 0.09 1.60 7.15 -51.93 -0.37 1.23 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 51 H 0.38 10.23 6.85 -40.82 -0.28 9.95 16 52 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 402.68 15.07 6.07 6.07 Total: -1.00 -34.13 402.68 -9.23 -43.36 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -8.20 Total: 7.89 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.35 Total: 0.54 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.81 Total: -65.93 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.13 -9.23 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185761907.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.534 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds