Wall clock time and date at job start Wed Apr 1 2020 04:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.52024 * 2 1 4 4 C 1.53200 * 109.49482 * 120.07359 * 2 1 3 5 5 N 1.46924 * 108.77148 * 174.58815 * 4 2 1 6 6 C 1.34778 * 120.62812 * 126.41368 * 5 4 2 7 7 O 1.21556 * 119.99969 * 351.86234 * 6 5 4 8 8 C 1.47845 * 119.99902 * 171.85283 * 6 5 4 9 9 C 1.39530 * 119.63302 * 160.62068 * 8 6 5 10 10 C 1.38229 * 119.15412 * 179.77088 * 9 8 6 11 11 C 1.39453 * 118.43003 * 0.49932 * 10 9 8 12 12 N 1.39063 * 120.40131 * 179.72407 * 11 10 9 13 13 C 1.46500 * 119.99850 * 174.39096 * 12 11 10 14 14 C 1.46494 * 120.00048 * 354.39066 * 12 11 10 15 15 C 1.39470 * 119.19344 * 359.74538 * 11 10 9 16 16 N 1.31318 * 120.77814 * 0.02562 * 15 11 10 17 17 C 1.46926 * 118.74256 * 306.39131 * 5 4 2 18 18 C 1.53191 * 108.77247 * 53.60950 * 17 5 4 19 19 C 1.53034 * 109.50015 * 239.91457 * 2 1 3 20 20 H 1.09004 * 109.44889 * 298.69678 * 19 2 1 21 21 C 1.53002 * 109.46311 * 58.66126 * 19 2 1 22 22 N 1.46498 * 109.47098 * 185.07043 * 21 19 2 23 23 C 1.36941 * 119.99609 * 180.27921 * 22 21 19 24 24 H 1.07998 * 120.00333 * 359.72090 * 23 22 21 25 25 C 1.38807 * 119.99890 * 179.72201 * 23 22 21 26 26 N 1.31621 * 119.99842 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00255 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46950 * 60.00066 * 27 25 23 29 29 H 1.48490 * 109.47427 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47228 * 300.00523 * 27 25 23 31 31 H 1.09000 * 109.47026 * 180.08541 * 1 2 3 32 32 H 1.08996 * 109.47804 * 300.08480 * 1 2 3 33 33 H 1.08997 * 109.47347 * 60.08769 * 1 2 3 34 34 H 1.09001 * 109.58298 * 54.80082 * 4 2 1 35 35 H 1.09000 * 109.70436 * 294.44770 * 4 2 1 36 36 H 1.07996 * 120.42563 * 0.02887 * 9 8 6 37 37 H 1.07998 * 120.78652 * 180.24343 * 10 9 8 38 38 H 1.09000 * 109.47438 * 89.99636 * 13 12 11 39 39 H 1.09000 * 109.46889 * 209.99951 * 13 12 11 40 40 H 1.09001 * 109.47243 * 329.99904 * 13 12 11 41 41 H 1.09001 * 109.47517 * 354.57719 * 14 12 11 42 42 H 1.08999 * 109.47373 * 114.57765 * 14 12 11 43 43 H 1.09006 * 109.47254 * 234.57514 * 14 12 11 44 44 H 1.08003 * 119.61209 * 180.02562 * 15 11 10 45 45 H 1.08998 * 109.58368 * 293.82582 * 17 5 4 46 46 H 1.08990 * 109.58710 * 173.39858 * 17 5 4 47 47 H 1.09000 * 109.49634 * 185.41445 * 18 17 5 48 48 H 1.08993 * 109.52824 * 65.33553 * 18 17 5 49 49 H 1.09000 * 109.46987 * 65.06949 * 21 19 2 50 50 H 1.09005 * 109.46744 * 305.07242 * 21 19 2 51 51 H 0.96996 * 120.00652 * 359.97438 * 22 21 19 52 52 H 0.97006 * 119.99553 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7237 1.2498 5 7 3.5045 -0.8290 1.1698 6 6 4.2810 -0.3861 2.1785 7 8 3.7866 0.2377 3.0972 8 6 5.7340 -0.6591 2.1676 9 6 6.5870 0.1133 2.9566 10 6 7.9432 -0.1536 2.9425 11 6 8.4085 -1.1844 2.1266 12 7 9.7655 -1.4843 2.0766 13 6 10.2315 -2.6449 1.3137 14 6 10.7290 -0.6395 2.7866 15 6 7.4964 -1.9106 1.3612 16 7 6.2136 -1.6331 1.4021 17 6 4.1053 -1.4266 -0.0305 18 6 3.5709 -0.6951 -1.2658 19 6 2.0408 -0.7231 -1.2482 20 1 1.6968 -1.7574 -1.2348 21 6 1.5038 -0.0235 -2.4984 22 7 1.8918 -0.7844 -3.6886 23 6 1.5254 -0.3439 -4.9324 24 1 0.9466 0.5620 -5.0356 25 6 1.8980 -1.0617 -6.0605 26 7 2.6030 -2.1660 -5.9347 27 14 1.3977 -0.4613 -7.7571 28 1 1.9633 0.8919 -7.9900 29 1 1.9150 -1.3983 -8.7863 30 1 -0.0836 -0.4002 -7.8437 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8891 33 1 -0.3634 0.5124 -0.8907 34 1 1.6051 -1.7215 1.2982 35 1 1.7635 -0.1599 2.1403 36 1 6.1923 0.9069 3.5736 37 1 8.6268 0.4252 3.5458 38 1 10.4464 -2.3435 0.2885 39 1 11.1368 -3.0419 1.7731 40 1 9.4581 -3.4130 1.3120 41 1 10.2132 0.2211 3.2125 42 1 11.1969 -1.2146 3.5856 43 1 11.4940 -0.2964 2.0900 44 1 7.8494 -2.7107 0.7273 45 1 3.8375 -2.4817 -0.0863 46 1 5.1895 -1.3245 0.0141 47 1 3.9335 -1.1898 -2.1668 48 1 3.9159 0.3388 -1.2546 49 1 1.9194 0.9824 -2.5587 50 1 0.4167 0.0353 -2.4431 51 1 2.4120 -1.5978 -3.5960 52 1 2.8631 -2.6679 -6.7231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185761907.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:04 Heat of formation + Delta-G solvation = 15.366312 kcal Electronic energy + Delta-G solvation = -30737.121087 eV Core-core repulsion = 26736.659302 eV Total energy + Delta-G solvation = -4000.461785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.93552 -40.71207 -39.15900 -37.74959 -36.55062 -34.99518 -33.48208 -33.29222 -31.99094 -31.59486 -29.33228 -28.40602 -27.99425 -26.40073 -25.43430 -24.39596 -23.74265 -22.98026 -22.51730 -21.31745 -20.54107 -19.14072 -18.56618 -18.29477 -17.54210 -16.99683 -16.73289 -16.42716 -16.09077 -15.93396 -15.71894 -15.58817 -15.28586 -15.24470 -15.12326 -14.68773 -14.59992 -14.30768 -14.22735 -13.90351 -13.82274 -13.42776 -13.35875 -13.09122 -12.98984 -12.93111 -12.87878 -12.76915 -12.66540 -12.45389 -12.21123 -11.95096 -11.87642 -11.63131 -11.59206 -11.32997 -11.26096 -11.16231 -10.88657 -10.61621 -10.12095 -9.61543 -8.94828 -8.43626 -7.92400 -5.20422 -0.15198 0.27567 1.47507 1.50569 1.56659 1.71137 1.96345 2.07500 2.57631 2.85572 3.21980 3.40338 3.63151 3.70941 3.72893 3.81662 3.90559 3.94199 4.09486 4.12677 4.21899 4.28332 4.37668 4.46677 4.50540 4.53540 4.55540 4.66328 4.67998 4.72742 4.77474 4.80564 4.81871 4.84438 4.90564 4.96705 5.00538 5.04025 5.10601 5.14352 5.16708 5.24103 5.30605 5.37141 5.45824 5.49479 5.56778 5.68383 6.08220 6.20816 6.30059 6.38108 6.78609 7.14609 7.36348 8.12917 8.37673 9.30898 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010573 B = 0.002606 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.591205 B =10742.072600 C =12921.167632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.063 0.937 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.573 3.427 7 O -0.580 6.580 8 C -0.023 4.023 9 C -0.058 4.058 10 C -0.172 4.172 11 C 0.197 3.803 12 N -0.619 5.619 13 C 0.079 3.921 14 C 0.077 3.923 15 C 0.013 3.987 16 N -0.419 5.419 17 C 0.109 3.891 18 C -0.119 4.119 19 C -0.078 4.078 20 H 0.068 0.932 21 C 0.158 3.842 22 N -0.741 5.741 23 C -0.246 4.246 24 H 0.071 0.929 25 C -0.074 4.074 26 N -0.967 5.967 27 Si 0.972 3.028 28 H -0.280 1.280 29 H -0.293 1.293 30 H -0.279 1.279 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.146 0.854 37 H 0.169 0.831 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.178 0.822 45 H 0.069 0.931 46 H 0.125 0.875 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.008 0.992 50 H 0.029 0.971 51 H 0.375 0.625 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.194 0.720 22.029 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.004 4.004 5 N -0.323 5.323 6 C 0.362 3.638 7 O -0.460 6.460 8 C -0.161 4.161 9 C -0.079 4.079 10 C -0.202 4.202 11 C 0.087 3.913 12 N -0.326 5.326 13 C -0.064 4.064 14 C -0.065 4.065 15 C -0.154 4.154 16 N -0.131 5.131 17 C -0.014 4.014 18 C -0.157 4.157 19 C -0.097 4.097 20 H 0.086 0.914 21 C 0.031 3.969 22 N -0.384 5.384 23 C -0.378 4.378 24 H 0.089 0.911 25 C -0.266 4.266 26 N -0.618 5.618 27 Si 0.801 3.199 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.205 1.205 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.163 0.837 37 H 0.187 0.813 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.195 0.805 45 H 0.087 0.913 46 H 0.142 0.858 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.026 0.974 50 H 0.046 0.954 51 H 0.208 0.792 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.464 0.638 21.891 27.399 hybrid contribution 0.379 0.376 -0.858 1.010 sum 16.843 1.014 21.033 26.965 Atomic orbital electron populations 1.21793 0.93113 1.02667 1.02427 1.21339 0.97046 0.99027 0.93183 0.91840 1.21748 0.78668 1.01349 0.98599 1.48009 1.06934 1.59266 1.18103 1.18185 0.86044 0.77938 0.81589 1.90702 1.75130 1.42644 1.37559 1.20553 0.93532 0.99520 1.02477 1.21884 0.93140 0.97607 0.95310 1.21354 0.95268 1.00583 1.02981 1.19206 0.86015 0.93305 0.92738 1.46595 1.02099 1.30339 1.53605 1.21958 1.01455 0.86881 0.96057 1.22024 0.92163 0.95170 0.97184 1.22858 0.87427 1.02722 1.02371 1.67420 1.15856 1.14403 1.15374 1.22383 1.01181 0.96280 0.81510 1.21864 0.95565 1.00342 0.97978 1.21226 0.95143 0.99602 0.93728 0.91389 1.20877 0.96794 0.93432 0.85749 1.42553 1.65404 1.28937 1.01551 1.19577 1.26943 1.06072 0.85198 0.91076 1.25529 1.01644 0.98032 1.01426 1.69807 1.44253 1.18524 1.29206 0.85235 0.77886 0.77118 0.79656 1.20601 1.21954 1.20482 0.91967 0.91035 0.92412 0.90292 0.89353 0.83672 0.81334 0.92171 0.88975 0.90629 0.89765 0.90938 0.90821 0.80493 0.91253 0.85777 0.91840 0.93237 0.97413 0.95359 0.79245 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.82 71.98 0.63 -2.96 16 2 C -0.09 -2.48 2.41 -10.72 -0.03 -2.51 16 3 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 4 C 0.12 3.30 5.73 86.37 0.49 3.79 16 5 N -0.59 -17.93 2.97 -822.32 -2.44 -20.38 16 6 C 0.57 18.25 7.59 86.79 0.66 18.91 16 7 O -0.58 -20.84 15.91 -3.89 -0.06 -20.90 16 8 C -0.02 -0.64 6.38 41.85 0.27 -0.37 16 9 C -0.06 -1.27 9.61 22.58 0.22 -1.05 16 10 C -0.17 -2.75 9.35 22.56 0.21 -2.53 16 11 C 0.20 3.13 6.55 38.58 0.25 3.38 16 12 N -0.62 -6.34 3.39 -746.79 -2.53 -8.87 16 13 C 0.08 0.51 10.10 127.77 1.29 1.80 16 14 C 0.08 0.39 10.59 127.77 1.35 1.74 16 15 C 0.01 0.25 10.33 85.07 0.88 1.13 16 16 N -0.42 -10.59 6.52 -184.38 -1.20 -11.79 16 17 C 0.11 3.24 5.77 86.36 0.50 3.74 16 18 C -0.12 -4.07 5.25 30.67 0.16 -3.91 16 19 C -0.08 -2.67 1.73 -10.77 -0.02 -2.69 16 20 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 21 C 0.16 6.62 5.41 86.38 0.47 7.08 16 22 N -0.74 -38.73 5.32 -343.45 -1.83 -40.56 16 23 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 24 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 25 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 26 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 27 Si 0.97 46.83 29.55 68.60 2.03 48.85 16 28 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 29 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 30 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.57 6.29 -2.39 -0.02 1.56 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 2.51 7.00 -2.39 -0.02 2.49 16 36 H 0.15 3.04 7.76 -2.91 -0.02 3.02 16 37 H 0.17 1.58 5.93 -2.91 -0.02 1.56 16 38 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.09 0.26 8.07 -2.39 -0.02 0.24 16 40 H 0.08 0.49 6.46 -2.39 -0.02 0.48 16 41 H 0.08 0.35 5.43 -2.39 -0.01 0.34 16 42 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 44 H 0.18 2.60 6.31 -2.91 -0.02 2.58 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.13 3.67 4.45 -14.92 -0.07 3.60 16 47 H 0.06 2.46 7.15 -2.39 -0.02 2.45 16 48 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 50 H 0.03 1.18 6.14 -2.38 -0.01 1.16 16 51 H 0.38 20.60 6.85 -92.71 -0.63 19.96 16 52 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -73.90 402.68 3.13 -70.77 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.24 Total: 33.77 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 8.65 Total: 8.44 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -7.72 Total: -140.93 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.06 Total: -20.90 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -73.90 3.13 -70.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185761907.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.133 kcal (2) G-P(sol) polarization free energy of solvation -73.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds