Wall clock time and date at job start Wed Apr 1 2020 04:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.49269 * 2 1 4 4 C 1.53192 * 109.52387 * 120.08051 * 2 1 3 5 5 N 1.46928 * 108.77248 * 174.60171 * 4 2 1 6 6 C 1.34777 * 120.62840 * 126.41647 * 5 4 2 7 7 O 1.21610 * 119.99849 * 354.95934 * 6 5 4 8 8 C 1.47418 * 120.00103 * 174.96292 * 6 5 4 9 9 C 1.41299 * 126.41469 * 309.11339 * 8 6 5 10 10 N 1.30447 * 108.02206 * 179.87841 * 9 8 6 11 11 N 1.39933 * 108.89870 * 0.38543 * 10 9 8 12 12 C 1.46496 * 125.75530 * 179.72831 * 11 10 9 13 13 C 1.34263 * 108.49209 * 359.75418 * 11 10 9 14 14 C 1.50698 * 126.29210 * 179.97438 * 13 11 10 15 15 C 1.52997 * 117.49812 * 312.64343 * 14 13 11 16 16 C 1.53001 * 117.49840 * 243.98361 * 14 13 11 17 17 C 1.46920 * 118.74033 * 306.39488 * 5 4 2 18 18 C 1.53191 * 108.77891 * 53.60591 * 17 5 4 19 19 C 1.53039 * 109.31384 * 305.36554 * 18 17 5 20 20 H 1.08998 * 109.44939 * 301.35240 * 19 18 17 21 21 C 1.52998 * 109.46051 * 181.37947 * 19 18 17 22 22 N 1.46505 * 109.46812 * 64.93478 * 21 19 18 23 23 C 1.36935 * 120.00128 * 179.97438 * 22 21 19 24 24 H 1.08009 * 119.99783 * 0.02562 * 23 22 21 25 25 C 1.38806 * 120.00191 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00078 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99984 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47082 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47257 * 120.00399 * 27 25 23 30 30 H 1.48502 * 109.46843 * 239.99910 * 27 25 23 31 31 H 1.08998 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47364 * 300.05999 * 1 2 3 33 33 H 1.09000 * 109.47164 * 60.06280 * 1 2 3 34 34 H 1.08999 * 109.58495 * 294.39480 * 4 2 1 35 35 H 1.09000 * 109.58572 * 54.67371 * 4 2 1 36 36 H 1.08004 * 125.98346 * 0.02562 * 9 8 6 37 37 H 1.09001 * 109.47287 * 264.96997 * 12 11 10 38 38 H 1.09002 * 109.47126 * 24.96985 * 12 11 10 39 39 H 1.08994 * 109.47219 * 144.96774 * 12 11 10 40 40 H 1.09001 * 115.55122 * 98.31400 * 14 13 11 41 41 H 1.09010 * 117.49906 * 0.02562 * 15 14 13 42 42 H 1.08995 * 117.50411 * 145.01965 * 15 14 13 43 43 H 1.08996 * 117.50259 * 214.97752 * 16 14 13 44 44 H 1.09001 * 117.49479 * 359.97438 * 16 14 13 45 45 H 1.08996 * 109.58635 * 173.39938 * 17 5 4 46 46 H 1.09001 * 109.58495 * 293.81966 * 17 5 4 47 47 H 1.09000 * 109.49752 * 185.41126 * 18 17 5 48 48 H 1.08998 * 109.49291 * 65.31788 * 18 17 5 49 49 H 1.08998 * 109.47183 * 304.93378 * 21 19 18 50 50 H 1.08997 * 109.47283 * 184.92989 * 21 19 18 51 51 H 0.96997 * 119.99886 * 359.97438 * 22 21 19 52 52 H 0.96995 * 119.99860 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 1.2494 5 7 3.5054 -0.8283 1.1689 6 6 4.2819 -0.3853 2.1775 7 8 3.7797 0.1890 3.1244 8 6 5.7402 -0.5970 2.1326 9 6 6.4030 -1.8211 1.8902 10 7 7.6878 -1.5988 1.9285 11 7 7.9054 -0.2438 2.2021 12 6 9.2129 0.4040 2.3323 13 6 6.7138 0.3624 2.3257 14 6 6.4819 1.8217 2.6214 15 6 7.2822 2.4466 3.7658 16 6 5.7858 2.1739 3.9376 17 6 4.1060 -1.4254 -0.0316 18 6 3.5708 -0.6939 -1.2667 19 6 2.0408 -0.7227 -1.2486 20 1 1.6974 -1.7571 -1.2354 21 6 1.5030 -0.0229 -2.4984 22 7 1.8925 -0.7825 -3.6891 23 6 1.5205 -0.3451 -4.9322 24 1 0.9403 0.5601 -5.0350 25 6 1.8899 -1.0645 -6.0604 26 7 2.5974 -2.1673 -5.9352 27 14 1.3831 -0.4674 -7.7563 28 1 0.5987 0.7867 -7.6255 29 1 2.5960 -0.2103 -8.5736 30 1 0.5511 -1.5044 -8.4179 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3633 0.5129 -0.8905 34 1 1.7644 -0.1580 2.1388 35 1 1.6045 -1.7208 1.2992 36 1 5.9289 -2.7733 1.7033 37 1 9.4971 0.4408 3.3840 38 1 9.9572 -0.1644 1.7745 39 1 9.1574 1.4175 1.9353 40 1 6.2683 2.4487 1.7556 41 1 7.9770 1.8021 4.3047 42 1 7.5950 3.4846 3.6533 43 1 5.1146 3.0327 3.9379 44 1 5.4953 1.3500 4.5894 45 1 5.1902 -1.3228 0.0126 46 1 3.8387 -2.4806 -0.0877 47 1 3.9334 -1.1883 -2.1679 48 1 3.9154 0.3401 -1.2547 49 1 1.9173 0.9835 -2.5579 50 1 0.4160 0.0342 -2.4434 51 1 2.4138 -1.5952 -3.5968 52 1 2.8608 -2.4771 -5.0547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185786790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:48 Heat of formation + Delta-G solvation = 76.072179 kcal Electronic energy + Delta-G solvation = -31413.877302 eV Core-core repulsion = 27416.047921 eV Total energy + Delta-G solvation = -3997.829381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.81846 -39.88985 -37.85191 -37.32735 -35.06522 -33.93524 -33.31727 -32.01457 -30.51740 -30.11256 -27.88970 -26.71833 -26.18593 -23.97452 -23.46420 -22.91560 -22.65444 -21.81231 -21.33415 -20.51880 -19.68798 -18.77378 -17.56257 -17.21875 -16.45434 -16.29372 -15.80198 -15.24818 -15.16554 -14.80163 -14.64001 -14.49143 -14.17132 -13.93881 -13.85915 -13.59745 -13.28190 -13.08754 -13.01399 -12.91453 -12.67444 -12.42793 -12.26517 -11.92919 -11.83521 -11.80836 -11.59708 -11.37868 -10.96214 -10.88983 -10.71005 -10.63513 -10.61351 -10.40094 -10.21997 -10.10938 -9.97245 -9.80234 -9.59697 -9.14977 -8.83883 -8.76755 -8.48933 -6.95450 -6.08320 -3.07042 1.37653 2.05261 2.10130 2.87088 3.22976 3.34761 3.52529 3.59129 3.68627 4.02082 4.18695 4.46821 4.57167 4.67052 4.69057 4.70711 4.84755 4.85318 4.87835 4.95020 5.02309 5.07632 5.14629 5.23410 5.26564 5.34339 5.45813 5.52478 5.55559 5.60608 5.63699 5.69616 5.70380 5.80828 5.87304 5.90376 5.91461 5.94947 6.00117 6.16848 6.22811 6.27730 6.31863 6.46199 6.49997 6.55798 6.62762 6.80169 6.89736 7.33250 7.46973 7.84513 8.25407 8.78411 9.26622 10.12798 10.28325 11.40613 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012879 B = 0.002659 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.571353 B =10527.714076 C =11516.067141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.072 0.928 4 C 0.120 3.880 5 N -0.603 5.603 6 C 0.599 3.401 7 O -0.543 6.543 8 C -0.278 4.278 9 C 0.082 3.918 10 N -0.294 5.294 11 N -0.359 5.359 12 C 0.098 3.902 13 C 0.171 3.829 14 C -0.113 4.113 15 C -0.180 4.180 16 C -0.128 4.128 17 C 0.107 3.893 18 C -0.123 4.123 19 C -0.090 4.090 20 H 0.070 0.930 21 C 0.162 3.838 22 N -0.743 5.743 23 C -0.328 4.328 24 H 0.064 0.936 25 C -0.047 4.047 26 N -0.946 5.946 27 Si 1.084 2.916 28 H -0.295 1.295 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.190 0.810 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.016 0.984 50 H 0.025 0.975 51 H 0.366 0.634 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.811 6.363 21.940 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.002 4.002 5 N -0.335 5.335 6 C 0.387 3.613 7 O -0.420 6.420 8 C -0.293 4.293 9 C -0.105 4.105 10 N -0.114 5.114 11 N -0.138 5.138 12 C -0.043 4.043 13 C 0.040 3.960 14 C -0.133 4.133 15 C -0.217 4.217 16 C -0.166 4.166 17 C -0.016 4.016 18 C -0.161 4.161 19 C -0.109 4.109 20 H 0.089 0.911 21 C 0.035 3.965 22 N -0.389 5.389 23 C -0.459 4.459 24 H 0.082 0.918 25 C -0.244 4.244 26 N -0.592 5.592 27 Si 0.916 3.084 28 H -0.222 1.222 29 H -0.221 1.221 30 H -0.220 1.220 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.207 0.793 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.145 0.855 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.081 0.919 49 H 0.034 0.966 50 H 0.043 0.957 51 H 0.199 0.801 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.821 6.079 20.683 24.121 hybrid contribution -0.624 0.329 1.433 1.597 sum 10.196 6.408 22.116 25.182 Atomic orbital electron populations 1.21831 0.94437 1.02145 1.02032 1.21439 0.96019 0.99926 0.94166 0.90948 1.21669 0.78694 1.00749 0.99121 1.47965 1.06716 1.60864 1.17936 1.17250 0.84743 0.77559 0.81749 1.90724 1.74877 1.42370 1.34071 1.19872 0.93860 0.93915 1.21654 1.23990 0.90331 0.98529 0.97610 1.77211 1.17801 0.92510 1.23845 1.48267 1.05694 1.06365 1.53486 1.21979 0.80985 0.98027 1.03335 1.20399 0.85043 0.93719 0.96882 1.20526 1.08570 0.89109 0.95102 1.23143 0.95928 1.01786 1.00889 1.22948 0.93587 1.03510 0.96567 1.21891 0.98482 0.97088 0.84151 1.21899 0.95968 1.01116 0.97160 1.21357 0.94737 1.00085 0.94680 0.91128 1.20688 0.96673 0.93921 0.85214 1.42399 1.65920 1.28783 1.01804 1.20094 1.31771 1.08837 0.85243 0.91836 1.25740 0.99660 0.96688 1.02339 1.70819 1.40103 1.23193 1.25116 0.83159 0.75704 0.74534 0.75016 1.22179 1.22069 1.22040 0.92547 0.92914 0.91432 0.89123 0.91605 0.79322 0.90498 0.88750 0.89165 0.85498 0.88843 0.87843 0.87922 0.87549 0.89739 0.91352 0.89925 0.91893 0.96603 0.95732 0.80080 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.82 37.16 0.33 -1.48 16 2 C -0.10 -1.28 2.41 -90.49 -0.22 -1.50 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.51 5.73 -3.71 -0.02 1.48 16 5 N -0.60 -7.82 2.97 -174.04 -0.52 -8.34 16 6 C 0.60 8.34 7.32 -12.52 -0.09 8.25 16 7 O -0.54 -8.64 14.72 5.27 0.08 -8.56 16 8 C -0.28 -3.51 4.82 -105.07 -0.51 -4.02 16 9 C 0.08 0.96 10.00 -16.98 -0.17 0.79 16 10 N -0.29 -3.60 12.50 30.86 0.39 -3.22 16 11 N -0.36 -3.77 3.98 -63.34 -0.25 -4.02 16 12 C 0.10 0.61 10.11 59.84 0.61 1.21 16 13 C 0.17 1.94 6.45 -81.60 -0.53 1.41 16 14 C -0.11 -1.06 5.56 -91.77 -0.51 -1.57 16 15 C -0.18 -1.21 9.28 -26.69 -0.25 -1.46 16 16 C -0.13 -1.18 9.01 -26.69 -0.24 -1.42 16 17 C 0.11 1.34 5.93 -3.71 -0.02 1.31 16 18 C -0.12 -1.86 5.25 -26.61 -0.14 -2.00 16 19 C -0.09 -1.41 1.73 -90.58 -0.16 -1.56 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 21 C 0.16 3.26 5.41 -4.04 -0.02 3.24 16 22 N -0.74 -18.61 5.32 -59.91 -0.32 -18.93 16 23 C -0.33 -9.33 9.99 -15.06 -0.15 -9.48 16 24 H 0.06 1.80 7.83 -52.48 -0.41 1.39 16 25 C -0.05 -1.37 5.50 -17.43 -0.10 -1.47 16 26 N -0.95 -29.24 13.70 55.49 0.76 -28.48 16 27 Si 1.08 26.23 29.92 -169.99 -5.09 21.14 16 28 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.91 6.29 -51.93 -0.33 0.58 16 34 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.19 1.75 8.04 -52.48 -0.42 1.33 16 37 H 0.08 0.36 7.70 -51.93 -0.40 -0.04 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.41 7.70 -51.93 -0.40 0.01 16 40 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 0.59 7.24 -51.92 -0.38 0.21 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.11 1.18 7.66 -51.93 -0.40 0.79 16 45 H 0.08 1.03 5.27 -51.93 -0.27 0.76 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.08 1.41 7.15 -51.93 -0.37 1.04 16 48 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.02 0.51 6.14 -51.93 -0.32 0.19 16 51 H 0.37 9.27 5.67 -40.82 -0.23 9.03 16 52 H 0.25 7.71 6.77 -40.82 -0.28 7.43 16 LS Contribution 405.92 15.07 6.12 6.12 Total: -1.00 -34.87 405.92 -9.46 -44.33 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.44 Total: 8.24 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.19 Total: -8.27 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.06 Total: -62.99 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.09 Total: 21.14 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.87 -9.46 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185786790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.398 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds