Wall clock time and date at job start Wed Apr 1 2020 04:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.49269 * 2 1 4 4 C 1.53192 * 109.52387 * 120.08051 * 2 1 3 5 5 N 1.46928 * 108.77248 * 174.60171 * 4 2 1 6 6 C 1.34777 * 120.62840 * 126.41647 * 5 4 2 7 7 O 1.21610 * 119.99849 * 354.95934 * 6 5 4 8 8 C 1.47418 * 120.00103 * 174.96292 * 6 5 4 9 9 C 1.41299 * 126.41469 * 309.11339 * 8 6 5 10 10 N 1.30447 * 108.02206 * 179.87841 * 9 8 6 11 11 N 1.39933 * 108.89870 * 0.38543 * 10 9 8 12 12 C 1.46496 * 125.75530 * 179.72831 * 11 10 9 13 13 C 1.34263 * 108.49209 * 359.75418 * 11 10 9 14 14 C 1.50698 * 126.29210 * 179.97438 * 13 11 10 15 15 C 1.52997 * 117.49812 * 312.64343 * 14 13 11 16 16 C 1.53001 * 117.49840 * 243.98361 * 14 13 11 17 17 C 1.46920 * 118.74033 * 306.39488 * 5 4 2 18 18 C 1.53191 * 108.77891 * 53.60591 * 17 5 4 19 19 C 1.53039 * 109.31384 * 305.36554 * 18 17 5 20 20 H 1.08998 * 109.44939 * 301.35240 * 19 18 17 21 21 C 1.52998 * 109.46051 * 181.37947 * 19 18 17 22 22 N 1.46505 * 109.46812 * 64.93478 * 21 19 18 23 23 C 1.36935 * 120.00128 * 179.97438 * 22 21 19 24 24 H 1.08009 * 119.99783 * 0.02562 * 23 22 21 25 25 C 1.38806 * 120.00191 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00078 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99984 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47082 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47257 * 120.00399 * 27 25 23 30 30 H 1.48502 * 109.46843 * 239.99910 * 27 25 23 31 31 H 1.08998 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47364 * 300.05999 * 1 2 3 33 33 H 1.09000 * 109.47164 * 60.06280 * 1 2 3 34 34 H 1.08999 * 109.58495 * 294.39480 * 4 2 1 35 35 H 1.09000 * 109.58572 * 54.67371 * 4 2 1 36 36 H 1.08004 * 125.98346 * 0.02562 * 9 8 6 37 37 H 1.09001 * 109.47287 * 264.96997 * 12 11 10 38 38 H 1.09002 * 109.47126 * 24.96985 * 12 11 10 39 39 H 1.08994 * 109.47219 * 144.96774 * 12 11 10 40 40 H 1.09001 * 115.55122 * 98.31400 * 14 13 11 41 41 H 1.09010 * 117.49906 * 0.02562 * 15 14 13 42 42 H 1.08995 * 117.50411 * 145.01965 * 15 14 13 43 43 H 1.08996 * 117.50259 * 214.97752 * 16 14 13 44 44 H 1.09001 * 117.49479 * 359.97438 * 16 14 13 45 45 H 1.08996 * 109.58635 * 173.39938 * 17 5 4 46 46 H 1.09001 * 109.58495 * 293.81966 * 17 5 4 47 47 H 1.09000 * 109.49752 * 185.41126 * 18 17 5 48 48 H 1.08998 * 109.49291 * 65.31788 * 18 17 5 49 49 H 1.08998 * 109.47183 * 304.93378 * 21 19 18 50 50 H 1.08997 * 109.47283 * 184.92989 * 21 19 18 51 51 H 0.96997 * 119.99886 * 359.97438 * 22 21 19 52 52 H 0.96995 * 119.99860 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 1.2494 5 7 3.5054 -0.8283 1.1689 6 6 4.2819 -0.3853 2.1775 7 8 3.7797 0.1890 3.1244 8 6 5.7402 -0.5970 2.1326 9 6 6.4030 -1.8211 1.8902 10 7 7.6878 -1.5988 1.9285 11 7 7.9054 -0.2438 2.2021 12 6 9.2129 0.4040 2.3323 13 6 6.7138 0.3624 2.3257 14 6 6.4819 1.8217 2.6214 15 6 7.2822 2.4466 3.7658 16 6 5.7858 2.1739 3.9376 17 6 4.1060 -1.4254 -0.0316 18 6 3.5708 -0.6939 -1.2667 19 6 2.0408 -0.7227 -1.2486 20 1 1.6974 -1.7571 -1.2354 21 6 1.5030 -0.0229 -2.4984 22 7 1.8925 -0.7825 -3.6891 23 6 1.5205 -0.3451 -4.9322 24 1 0.9403 0.5601 -5.0350 25 6 1.8899 -1.0645 -6.0604 26 7 2.5974 -2.1673 -5.9352 27 14 1.3831 -0.4674 -7.7563 28 1 0.5987 0.7867 -7.6255 29 1 2.5960 -0.2103 -8.5736 30 1 0.5511 -1.5044 -8.4179 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3633 0.5129 -0.8905 34 1 1.7644 -0.1580 2.1388 35 1 1.6045 -1.7208 1.2992 36 1 5.9289 -2.7733 1.7033 37 1 9.4971 0.4408 3.3840 38 1 9.9572 -0.1644 1.7745 39 1 9.1574 1.4175 1.9353 40 1 6.2683 2.4487 1.7556 41 1 7.9770 1.8021 4.3047 42 1 7.5950 3.4846 3.6533 43 1 5.1146 3.0327 3.9379 44 1 5.4953 1.3500 4.5894 45 1 5.1902 -1.3228 0.0126 46 1 3.8387 -2.4806 -0.0877 47 1 3.9334 -1.1883 -2.1679 48 1 3.9154 0.3401 -1.2547 49 1 1.9173 0.9835 -2.5579 50 1 0.4160 0.0342 -2.4434 51 1 2.4138 -1.5952 -3.5968 52 1 2.8608 -2.4771 -5.0547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185786790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:47 Heat of formation + Delta-G solvation = 55.038719 kcal Electronic energy + Delta-G solvation = -31414.789381 eV Core-core repulsion = 27416.047921 eV Total energy + Delta-G solvation = -3998.741460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.66496 -40.99296 -39.07403 -38.02588 -36.75935 -35.18604 -34.23290 -33.44373 -31.88972 -31.33832 -28.70191 -28.19114 -27.15481 -25.53626 -24.64452 -24.04730 -23.46762 -22.93903 -22.49110 -21.42935 -20.84176 -19.73509 -19.33613 -18.45056 -17.36672 -17.18957 -16.85965 -16.65878 -16.08825 -15.98765 -15.84925 -15.55568 -15.44906 -15.29743 -15.05608 -14.81068 -14.50848 -14.28791 -14.15463 -13.81564 -13.63388 -13.49564 -13.15264 -13.05390 -12.94588 -12.77803 -12.66752 -12.57848 -12.43277 -12.20647 -12.05674 -11.88031 -11.75160 -11.65775 -11.55305 -11.39841 -11.31054 -11.11230 -10.92336 -10.84313 -10.39909 -9.71977 -9.52118 -9.07329 -8.39030 -5.31985 0.53146 1.17484 1.34986 1.58065 1.69375 1.81348 1.84890 2.21874 2.69573 2.70953 3.31812 3.40235 3.40535 3.60032 3.70077 3.72311 3.85405 3.86917 3.93572 4.01146 4.11071 4.15382 4.20243 4.26485 4.34507 4.37455 4.46358 4.50700 4.56895 4.60731 4.63833 4.68451 4.73032 4.74965 4.79532 4.82787 4.92096 4.94169 5.03646 5.05195 5.06447 5.16363 5.20911 5.21732 5.31898 5.35842 5.46928 5.59189 5.61198 5.83091 6.40000 6.49494 6.51646 7.11616 7.19315 8.02377 8.13324 9.13439 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012879 B = 0.002659 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.571353 B =10527.714076 C =11516.067141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.063 0.937 4 C 0.123 3.877 5 N -0.602 5.602 6 C 0.600 3.400 7 O -0.567 6.567 8 C -0.305 4.305 9 C 0.080 3.920 10 N -0.317 5.317 11 N -0.356 5.356 12 C 0.086 3.914 13 C 0.171 3.829 14 C -0.128 4.128 15 C -0.147 4.147 16 C -0.142 4.142 17 C 0.118 3.882 18 C -0.117 4.117 19 C -0.078 4.078 20 H 0.070 0.930 21 C 0.163 3.837 22 N -0.754 5.754 23 C -0.333 4.333 24 H 0.062 0.938 25 C -0.103 4.103 26 N -0.974 5.974 27 Si 1.131 2.869 28 H -0.274 1.274 29 H -0.291 1.291 30 H -0.290 1.290 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.206 0.794 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.129 0.871 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.051 0.949 49 H 0.006 0.994 50 H 0.026 0.974 51 H 0.362 0.638 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.386 7.271 22.817 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.081 0.919 4 C 0.001 3.999 5 N -0.333 5.333 6 C 0.389 3.611 7 O -0.446 6.446 8 C -0.320 4.320 9 C -0.106 4.106 10 N -0.137 5.137 11 N -0.135 5.135 12 C -0.054 4.054 13 C 0.038 3.962 14 C -0.147 4.147 15 C -0.184 4.184 16 C -0.180 4.180 17 C -0.005 4.005 18 C -0.155 4.155 19 C -0.097 4.097 20 H 0.089 0.911 21 C 0.037 3.963 22 N -0.399 5.399 23 C -0.465 4.465 24 H 0.080 0.920 25 C -0.294 4.294 26 N -0.623 5.623 27 Si 0.956 3.044 28 H -0.199 1.199 29 H -0.217 1.217 30 H -0.216 1.216 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.222 0.778 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.147 0.853 41 H 0.120 0.880 42 H 0.147 0.853 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.024 0.976 50 H 0.044 0.956 51 H 0.195 0.805 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.405 7.001 21.594 25.405 hybrid contribution -0.778 0.113 1.227 1.458 sum 10.626 7.114 22.822 26.160 Atomic orbital electron populations 1.21797 0.93335 1.02650 1.02314 1.21335 0.96860 0.99090 0.93243 0.91877 1.21667 0.78530 1.01400 0.98269 1.47988 1.06897 1.60651 1.17780 1.17440 0.85319 0.76929 0.81405 1.90706 1.75440 1.43519 1.34979 1.19926 0.93423 0.94974 1.23677 1.24258 0.90211 0.98968 0.97164 1.77154 1.18071 0.93793 1.24688 1.48601 1.06754 1.05824 1.52321 1.22371 0.79289 0.98780 1.04928 1.20706 0.85164 0.94483 0.95874 1.20598 1.10322 0.88239 0.95580 1.23247 0.94141 1.03003 0.97981 1.22864 0.95806 1.03009 0.96330 1.21791 0.98664 0.97364 0.82643 1.21784 0.95565 1.00545 0.97614 1.21234 0.94991 0.99744 0.93711 0.91119 1.20813 0.96710 0.93320 0.85484 1.42578 1.65849 1.29052 1.02380 1.20414 1.30860 1.08473 0.86737 0.92042 1.27148 0.99656 0.96517 1.06124 1.70927 1.42025 1.24631 1.24677 0.82569 0.75720 0.75006 0.71104 1.19916 1.21742 1.21647 0.91936 0.90936 0.92819 0.89235 0.90092 0.77757 0.88583 0.88139 0.87282 0.85299 0.88047 0.85330 0.87601 0.89903 0.89201 0.89757 0.92149 0.92998 0.97593 0.95575 0.80529 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.82 71.98 0.63 -2.70 16 2 C -0.09 -2.21 2.41 -10.71 -0.03 -2.24 16 3 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.12 2.94 5.73 86.36 0.49 3.44 16 5 N -0.60 -15.16 2.97 -822.80 -2.45 -17.60 16 6 C 0.60 16.50 7.32 86.66 0.63 17.14 16 7 O -0.57 -18.04 14.72 -4.06 -0.06 -18.10 16 8 C -0.31 -7.58 4.82 -20.15 -0.10 -7.68 16 9 C 0.08 1.83 10.00 85.65 0.86 2.68 16 10 N -0.32 -7.52 12.50 -56.27 -0.70 -8.22 16 11 N -0.36 -7.02 3.98 -354.32 -1.41 -8.43 16 12 C 0.09 0.87 10.11 127.77 1.29 2.16 16 13 C 0.17 3.72 6.45 42.14 0.27 3.99 16 14 C -0.13 -2.22 5.56 -11.54 -0.06 -2.29 16 15 C -0.15 -1.61 9.28 30.62 0.28 -1.33 16 16 C -0.14 -2.52 9.01 30.62 0.28 -2.24 16 17 C 0.12 2.88 5.93 86.36 0.51 3.40 16 18 C -0.12 -3.56 5.25 30.67 0.16 -3.40 16 19 C -0.08 -2.43 1.73 -10.77 -0.02 -2.45 16 20 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 21 C 0.16 6.60 5.41 86.38 0.47 7.07 16 22 N -0.75 -38.31 5.32 -343.45 -1.83 -40.14 16 23 C -0.33 -19.07 9.99 84.03 0.84 -18.23 16 24 H 0.06 3.48 7.83 -2.91 -0.02 3.45 16 25 C -0.10 -6.03 5.50 84.86 0.47 -5.56 16 26 N -0.97 -60.93 13.70 21.65 0.30 -60.63 16 27 Si 1.13 52.56 29.92 68.60 2.05 54.61 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 29 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 30 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.40 6.29 -2.39 -0.02 1.38 16 34 H 0.09 2.22 7.00 -2.39 -0.02 2.21 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.21 3.64 8.04 -2.91 -0.02 3.61 16 37 H 0.10 0.63 7.70 -2.39 -0.02 0.61 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.11 0.70 7.70 -2.39 -0.02 0.68 16 40 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.10 0.98 7.24 -2.38 -0.02 0.96 16 42 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.08 1.87 7.66 -2.39 -0.02 1.85 16 45 H 0.09 2.15 5.27 -2.39 -0.01 2.14 16 46 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.06 2.12 7.15 -2.39 -0.02 2.10 16 48 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 50 H 0.03 1.07 6.14 -2.39 -0.01 1.06 16 51 H 0.36 18.79 5.67 -92.71 -0.53 18.27 16 52 H 0.25 15.21 6.77 -92.71 -0.63 14.58 16 Total: -1.00 -75.58 405.92 3.43 -72.15 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.54 Total: 34.59 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 6.99 Total: -8.22 kcal Atomic # 7 Polarization: -128.94 SS G_CDS: -6.09 Total: -135.02 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.06 Total: -18.10 kcal Atomic # 14 Polarization: 52.56 SS G_CDS: 2.05 Total: 54.61 kcal Total: -75.58 3.43 -72.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185786790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.188 kcal (2) G-P(sol) polarization free energy of solvation -75.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds