Wall clock time and date at job start Wed Apr 1 2020 04:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.52756 * 2 1 4 4 C 1.53192 * 109.49744 * 120.08801 * 2 1 3 5 5 N 1.46915 * 108.77784 * 65.31431 * 4 2 1 6 6 C 1.34783 * 120.62836 * 233.63070 * 5 4 2 7 7 O 1.21597 * 120.00244 * 355.41720 * 6 5 4 8 8 C 1.47435 * 119.99772 * 175.41347 * 6 5 4 9 9 C 1.41293 * 126.41065 * 55.64535 * 8 6 5 10 10 N 1.30455 * 108.01605 * 179.87433 * 9 8 6 11 11 N 1.39930 * 108.89884 * 0.38636 * 10 9 8 12 12 C 1.46505 * 125.75586 * 179.77556 * 11 10 9 13 13 C 1.34259 * 108.49099 * 359.74546 * 11 10 9 14 14 C 1.50709 * 126.28970 * 180.02562 * 13 11 10 15 15 C 1.52997 * 117.49953 * 196.05377 * 14 13 11 16 16 C 1.52999 * 117.49374 * 127.43231 * 14 13 11 17 17 C 1.46921 * 118.74288 * 53.61055 * 5 4 2 18 18 C 1.53195 * 108.77522 * 306.39057 * 17 5 4 19 19 C 1.53037 * 109.31008 * 54.63156 * 18 17 5 20 20 H 1.09003 * 109.44960 * 58.65255 * 19 18 17 21 21 C 1.53004 * 109.45825 * 178.61599 * 19 18 17 22 22 N 1.46500 * 109.47354 * 295.06792 * 21 19 18 23 23 C 1.36933 * 120.00324 * 180.02562 * 22 21 19 24 24 H 1.07996 * 119.99670 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00025 * 180.02562 * 23 22 21 26 26 N 1.31611 * 119.99903 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99641 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47029 * 179.97438 * 27 25 23 29 29 H 1.48500 * 109.47393 * 299.99629 * 27 25 23 30 30 H 1.48502 * 109.47419 * 60.00150 * 27 25 23 31 31 H 1.09005 * 109.47353 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47415 * 300.07820 * 1 2 3 33 33 H 1.09000 * 109.47258 * 60.07901 * 1 2 3 34 34 H 1.09002 * 109.58215 * 185.10354 * 4 2 1 35 35 H 1.09002 * 109.58147 * 305.38208 * 4 2 1 36 36 H 1.08002 * 125.99248 * 359.97438 * 9 8 6 37 37 H 1.08992 * 109.46567 * 264.82632 * 12 11 10 38 38 H 1.09003 * 109.46630 * 24.81720 * 12 11 10 39 39 H 1.08995 * 109.47465 * 144.82293 * 12 11 10 40 40 H 1.08999 * 115.54826 * 341.76707 * 14 13 11 41 41 H 1.09006 * 117.49717 * 0.02562 * 15 14 13 42 42 H 1.08999 * 117.49667 * 145.01830 * 15 14 13 43 43 H 1.09004 * 117.49337 * 214.97621 * 16 14 13 44 44 H 1.08995 * 117.50553 * 359.97438 * 16 14 13 45 45 H 1.09001 * 109.58938 * 66.17788 * 17 5 4 46 46 H 1.09005 * 109.59206 * 186.46258 * 17 5 4 47 47 H 1.09002 * 109.49657 * 294.68691 * 18 17 5 48 48 H 1.08999 * 109.50151 * 174.58435 * 18 17 5 49 49 H 1.09007 * 109.47111 * 175.07046 * 21 19 18 50 50 H 1.08997 * 109.47223 * 55.07143 * 21 19 18 51 51 H 0.96997 * 119.99530 * 0.02562 * 22 21 19 52 52 H 0.96997 * 120.00339 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7240 1.2495 5 7 1.6515 -2.1382 1.1694 6 6 0.9739 -2.7219 2.1778 7 8 0.7522 -2.1022 3.2002 8 6 0.5015 -4.1118 2.0410 9 6 1.2946 -5.2412 1.7379 10 7 0.5140 -6.2860 1.7073 11 7 -0.7977 -5.8797 1.9766 12 6 -1.9713 -6.7551 2.0291 13 6 -0.7992 -4.5526 2.1795 14 6 -2.0004 -3.7006 2.4999 15 6 -1.8602 -2.1872 2.3245 16 6 -1.9150 -2.7928 3.7285 17 6 2.0139 -2.9040 -0.0309 18 6 1.5029 -2.1558 -1.2662 19 6 2.0407 -0.7231 -1.2484 20 1 3.1304 -0.7446 -1.2353 21 6 1.5605 0.0171 -2.4984 22 7 2.1466 -0.6038 -3.6890 23 6 1.8584 -0.1075 -4.9322 24 1 1.1995 0.7420 -5.0351 25 6 2.4133 -0.6961 -6.0603 26 7 3.2168 -1.7310 -5.9348 27 14 2.0196 -0.0194 -7.7563 28 1 2.7324 -0.8181 -8.7856 29 1 0.5558 -0.0989 -7.9934 30 1 2.4582 1.3970 -7.8382 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5151 0.8893 33 1 -0.3634 0.5126 -0.8907 34 1 3.1274 -0.6464 1.2979 35 1 1.6026 -0.2716 2.1390 36 1 2.3605 -5.2400 1.5637 37 1 -2.4739 -6.7470 1.0620 38 1 -1.6562 -7.7713 2.2662 39 1 -2.6566 -6.3984 2.7978 40 1 -2.9680 -4.1468 2.2701 41 1 -0.8992 -1.8078 1.9769 42 1 -2.7356 -1.6374 1.9789 43 1 -2.8266 -2.6412 4.3066 44 1 -0.9903 -2.8119 4.3052 45 1 3.0978 -3.0044 -0.0870 46 1 1.5573 -3.8928 0.0147 47 1 0.4131 -2.1354 -1.2542 48 1 1.8479 -2.6627 -2.1673 49 1 1.8695 1.0610 -2.4437 50 1 0.4736 -0.0375 -2.5580 51 1 2.7387 -1.3664 -3.5965 52 1 3.4215 -2.0821 -5.0541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185786792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:53 Heat of formation + Delta-G solvation = 85.551910 kcal Electronic energy + Delta-G solvation = -32189.807045 eV Core-core repulsion = 28192.388736 eV Total energy + Delta-G solvation = -3997.418309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.89903 -40.09296 -38.16469 -37.02777 -35.06314 -33.92254 -33.27350 -31.82494 -30.33913 -30.12940 -27.84693 -26.89376 -26.28812 -24.10694 -23.44019 -23.15321 -22.50148 -22.11663 -21.39850 -20.65785 -19.18108 -18.33371 -17.77996 -17.22133 -16.68689 -16.07700 -15.76679 -15.33484 -14.98571 -14.88291 -14.67647 -14.52993 -14.12818 -14.08532 -13.72625 -13.61033 -13.55085 -13.12826 -13.00751 -12.87724 -12.76226 -12.48884 -12.27319 -11.86973 -11.66514 -11.50071 -11.36573 -11.28389 -11.13508 -10.95300 -10.70192 -10.69646 -10.61704 -10.35121 -10.18821 -10.15266 -9.93590 -9.78265 -9.45806 -9.15153 -8.85087 -8.72130 -8.50193 -6.96814 -6.08631 -3.07485 1.35347 2.07183 2.11374 2.76637 3.15507 3.52208 3.55748 3.69003 3.73201 4.05800 4.18995 4.52555 4.61318 4.66188 4.67997 4.76385 4.81095 4.85317 4.86468 4.96610 5.02577 5.05093 5.14569 5.25523 5.28161 5.41923 5.49196 5.51778 5.56204 5.63645 5.65441 5.73111 5.78045 5.82771 5.85114 5.93268 5.97895 6.03090 6.08046 6.18205 6.19652 6.25208 6.34902 6.41145 6.50064 6.57063 6.63379 6.76546 6.89184 7.34607 7.41549 7.82851 8.18605 8.77796 9.25957 10.12172 10.27596 11.40093 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.002869 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.349977 B = 9756.374190 C =10504.749137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.118 3.882 5 N -0.598 5.598 6 C 0.600 3.400 7 O -0.543 6.543 8 C -0.288 4.288 9 C 0.083 3.917 10 N -0.294 5.294 11 N -0.362 5.362 12 C 0.097 3.903 13 C 0.177 3.823 14 C -0.125 4.125 15 C -0.160 4.160 16 C -0.147 4.147 17 C 0.103 3.897 18 C -0.125 4.125 19 C -0.089 4.089 20 H 0.070 0.930 21 C 0.164 3.836 22 N -0.743 5.743 23 C -0.329 4.329 24 H 0.063 0.937 25 C -0.046 4.046 26 N -0.945 5.945 27 Si 1.079 2.921 28 H -0.285 1.285 29 H -0.296 1.296 30 H -0.296 1.296 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.190 0.810 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.118 0.882 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.017 0.983 50 H 0.022 0.978 51 H 0.366 0.634 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 -5.965 21.050 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.004 4.004 5 N -0.330 5.330 6 C 0.389 3.611 7 O -0.422 6.422 8 C -0.303 4.303 9 C -0.104 4.104 10 N -0.113 5.113 11 N -0.141 5.141 12 C -0.044 4.044 13 C 0.045 3.955 14 C -0.145 4.145 15 C -0.198 4.198 16 C -0.185 4.185 17 C -0.019 4.019 18 C -0.163 4.163 19 C -0.108 4.108 20 H 0.088 0.912 21 C 0.037 3.963 22 N -0.389 5.389 23 C -0.460 4.460 24 H 0.081 0.919 25 C -0.244 4.244 26 N -0.591 5.591 27 Si 0.910 3.090 28 H -0.210 1.210 29 H -0.223 1.223 30 H -0.223 1.223 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.207 0.793 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.136 0.864 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.035 0.965 50 H 0.039 0.961 51 H 0.199 0.801 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.253 -7.039 19.731 23.324 hybrid contribution -0.082 0.671 1.512 1.656 sum -10.335 -6.368 21.243 24.467 Atomic orbital electron populations 1.21915 0.94965 1.02002 1.01513 1.21463 0.96649 0.99441 0.94173 0.90014 1.21681 0.99553 0.80109 0.99097 1.47971 1.55640 1.11394 1.18003 1.17200 0.76655 0.84645 0.82611 1.90730 1.57708 1.65282 1.28459 1.19831 0.93080 0.95179 1.22231 1.23945 1.00069 0.88934 0.97490 1.77203 0.86969 1.23031 1.24131 1.48174 1.07337 1.04990 1.53575 1.21949 0.84023 0.94917 1.03511 1.20402 0.94547 0.84242 0.96280 1.20525 0.94434 0.92170 1.07396 1.23336 1.04847 0.91473 1.00122 1.23210 1.04512 1.00013 0.90738 1.21948 1.00228 0.95550 0.84201 1.21932 1.01401 0.95880 0.97079 1.21326 1.00138 0.94737 0.94639 0.91190 1.20645 0.95860 0.94557 0.85237 1.42387 1.57326 1.37386 1.01783 1.20027 1.27139 1.13592 0.85278 0.91924 1.25739 0.98278 0.98000 1.02337 1.70883 1.37949 1.25198 1.25050 0.83254 0.75362 0.74910 0.75479 1.21046 1.22335 1.22318 0.92443 0.93178 0.92008 0.91541 0.89020 0.79332 0.90250 0.88690 0.89395 0.86509 0.86835 0.88307 0.88528 0.86386 0.91235 0.89574 0.91405 0.90064 0.96480 0.96062 0.80060 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.21 37.16 0.31 -1.54 16 2 C -0.10 -1.24 2.72 -90.50 -0.25 -1.48 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.40 5.81 -3.72 -0.02 1.38 16 5 N -0.60 -7.35 2.41 -174.04 -0.42 -7.77 16 6 C 0.60 7.95 5.09 -12.51 -0.06 7.89 16 7 O -0.54 -8.15 12.56 5.28 0.07 -8.08 16 8 C -0.29 -3.63 4.89 -105.07 -0.51 -4.15 16 9 C 0.08 0.98 9.82 -16.98 -0.17 0.81 16 10 N -0.29 -3.68 12.50 30.86 0.39 -3.29 16 11 N -0.36 -3.92 3.98 -63.34 -0.25 -4.17 16 12 C 0.10 0.61 11.06 59.85 0.66 1.28 16 13 C 0.18 2.04 6.66 -81.60 -0.54 1.50 16 14 C -0.13 -1.20 5.83 -91.77 -0.53 -1.74 16 15 C -0.16 -1.68 9.48 -26.73 -0.25 -1.94 16 16 C -0.15 -1.43 9.61 -26.73 -0.26 -1.69 16 17 C 0.10 1.26 6.10 -3.71 -0.02 1.24 16 18 C -0.12 -1.83 4.91 -26.61 -0.13 -1.97 16 19 C -0.09 -1.37 1.96 -90.58 -0.18 -1.54 16 20 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 21 C 0.16 3.25 5.19 -4.04 -0.02 3.23 16 22 N -0.74 -18.49 5.32 -59.91 -0.32 -18.81 16 23 C -0.33 -9.33 9.99 -15.06 -0.15 -9.48 16 24 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 25 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 26 N -0.94 -29.14 13.70 55.49 0.76 -28.38 16 27 Si 1.08 26.02 29.92 -169.99 -5.09 20.93 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 30 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 31 H 0.06 0.76 5.23 -51.93 -0.27 0.49 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.12 7.04 -51.93 -0.37 0.75 16 36 H 0.19 1.76 8.01 -52.49 -0.42 1.34 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.37 7.75 -51.93 -0.40 -0.03 16 40 H 0.12 0.84 7.78 -51.93 -0.40 0.44 16 41 H 0.11 1.43 3.63 -51.93 -0.19 1.24 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.12 1.43 6.40 -51.93 -0.33 1.09 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.03 4.88 -51.93 -0.25 0.77 16 47 H 0.07 1.04 6.33 -51.93 -0.33 0.72 16 48 H 0.08 1.37 7.15 -51.93 -0.37 1.00 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.02 0.44 6.74 -51.93 -0.35 0.09 16 51 H 0.37 9.22 5.67 -40.82 -0.23 8.99 16 52 H 0.25 7.67 6.77 -40.82 -0.28 7.39 16 LS Contribution 393.73 15.07 5.93 5.93 Total: -1.00 -34.57 393.73 -9.13 -43.70 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.97 Total: 9.57 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.23 Total: -9.64 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.16 Total: -62.42 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.07 Total: -8.08 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.09 Total: 20.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.57 -9.13 -43.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185786792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.253 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds