Wall clock time and date at job start Wed Apr 1 2020 04:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.52756 * 2 1 4 4 C 1.53192 * 109.49744 * 120.08801 * 2 1 3 5 5 N 1.46915 * 108.77784 * 65.31431 * 4 2 1 6 6 C 1.34783 * 120.62836 * 233.63070 * 5 4 2 7 7 O 1.21597 * 120.00244 * 355.41720 * 6 5 4 8 8 C 1.47435 * 119.99772 * 175.41347 * 6 5 4 9 9 C 1.41293 * 126.41065 * 55.64535 * 8 6 5 10 10 N 1.30455 * 108.01605 * 179.87433 * 9 8 6 11 11 N 1.39930 * 108.89884 * 0.38636 * 10 9 8 12 12 C 1.46505 * 125.75586 * 179.77556 * 11 10 9 13 13 C 1.34259 * 108.49099 * 359.74546 * 11 10 9 14 14 C 1.50709 * 126.28970 * 180.02562 * 13 11 10 15 15 C 1.52997 * 117.49953 * 196.05377 * 14 13 11 16 16 C 1.52999 * 117.49374 * 127.43231 * 14 13 11 17 17 C 1.46921 * 118.74288 * 53.61055 * 5 4 2 18 18 C 1.53195 * 108.77522 * 306.39057 * 17 5 4 19 19 C 1.53037 * 109.31008 * 54.63156 * 18 17 5 20 20 H 1.09003 * 109.44960 * 58.65255 * 19 18 17 21 21 C 1.53004 * 109.45825 * 178.61599 * 19 18 17 22 22 N 1.46500 * 109.47354 * 295.06792 * 21 19 18 23 23 C 1.36933 * 120.00324 * 180.02562 * 22 21 19 24 24 H 1.07996 * 119.99670 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00025 * 180.02562 * 23 22 21 26 26 N 1.31611 * 119.99903 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99641 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47029 * 179.97438 * 27 25 23 29 29 H 1.48500 * 109.47393 * 299.99629 * 27 25 23 30 30 H 1.48502 * 109.47419 * 60.00150 * 27 25 23 31 31 H 1.09005 * 109.47353 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47415 * 300.07820 * 1 2 3 33 33 H 1.09000 * 109.47258 * 60.07901 * 1 2 3 34 34 H 1.09002 * 109.58215 * 185.10354 * 4 2 1 35 35 H 1.09002 * 109.58147 * 305.38208 * 4 2 1 36 36 H 1.08002 * 125.99248 * 359.97438 * 9 8 6 37 37 H 1.08992 * 109.46567 * 264.82632 * 12 11 10 38 38 H 1.09003 * 109.46630 * 24.81720 * 12 11 10 39 39 H 1.08995 * 109.47465 * 144.82293 * 12 11 10 40 40 H 1.08999 * 115.54826 * 341.76707 * 14 13 11 41 41 H 1.09006 * 117.49717 * 0.02562 * 15 14 13 42 42 H 1.08999 * 117.49667 * 145.01830 * 15 14 13 43 43 H 1.09004 * 117.49337 * 214.97621 * 16 14 13 44 44 H 1.08995 * 117.50553 * 359.97438 * 16 14 13 45 45 H 1.09001 * 109.58938 * 66.17788 * 17 5 4 46 46 H 1.09005 * 109.59206 * 186.46258 * 17 5 4 47 47 H 1.09002 * 109.49657 * 294.68691 * 18 17 5 48 48 H 1.08999 * 109.50151 * 174.58435 * 18 17 5 49 49 H 1.09007 * 109.47111 * 175.07046 * 21 19 18 50 50 H 1.08997 * 109.47223 * 55.07143 * 21 19 18 51 51 H 0.96997 * 119.99530 * 0.02562 * 22 21 19 52 52 H 0.96997 * 120.00339 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7240 1.2495 5 7 1.6515 -2.1382 1.1694 6 6 0.9739 -2.7219 2.1778 7 8 0.7522 -2.1022 3.2002 8 6 0.5015 -4.1118 2.0410 9 6 1.2946 -5.2412 1.7379 10 7 0.5140 -6.2860 1.7073 11 7 -0.7977 -5.8797 1.9766 12 6 -1.9713 -6.7551 2.0291 13 6 -0.7992 -4.5526 2.1795 14 6 -2.0004 -3.7006 2.4999 15 6 -1.8602 -2.1872 2.3245 16 6 -1.9150 -2.7928 3.7285 17 6 2.0139 -2.9040 -0.0309 18 6 1.5029 -2.1558 -1.2662 19 6 2.0407 -0.7231 -1.2484 20 1 3.1304 -0.7446 -1.2353 21 6 1.5605 0.0171 -2.4984 22 7 2.1466 -0.6038 -3.6890 23 6 1.8584 -0.1075 -4.9322 24 1 1.1995 0.7420 -5.0351 25 6 2.4133 -0.6961 -6.0603 26 7 3.2168 -1.7310 -5.9348 27 14 2.0196 -0.0194 -7.7563 28 1 2.7324 -0.8181 -8.7856 29 1 0.5558 -0.0989 -7.9934 30 1 2.4582 1.3970 -7.8382 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5151 0.8893 33 1 -0.3634 0.5126 -0.8907 34 1 3.1274 -0.6464 1.2979 35 1 1.6026 -0.2716 2.1390 36 1 2.3605 -5.2400 1.5637 37 1 -2.4739 -6.7470 1.0620 38 1 -1.6562 -7.7713 2.2662 39 1 -2.6566 -6.3984 2.7978 40 1 -2.9680 -4.1468 2.2701 41 1 -0.8992 -1.8078 1.9769 42 1 -2.7356 -1.6374 1.9789 43 1 -2.8266 -2.6412 4.3066 44 1 -0.9903 -2.8119 4.3052 45 1 3.0978 -3.0044 -0.0870 46 1 1.5573 -3.8928 0.0147 47 1 0.4131 -2.1354 -1.2542 48 1 1.8479 -2.6627 -2.1673 49 1 1.8695 1.0610 -2.4437 50 1 0.4736 -0.0375 -2.5580 51 1 2.7387 -1.3664 -3.5965 52 1 3.4215 -2.0821 -5.0541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185786792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:51 Heat of formation + Delta-G solvation = 64.863117 kcal Electronic energy + Delta-G solvation = -32190.704178 eV Core-core repulsion = 28192.388736 eV Total energy + Delta-G solvation = -3998.315442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.76147 -41.13841 -39.27559 -37.87507 -36.74446 -35.05522 -34.31134 -33.20119 -31.85407 -31.16334 -28.64949 -28.32644 -27.29509 -25.51346 -24.81410 -24.30899 -23.31814 -23.29920 -22.49397 -21.61036 -20.15094 -19.60604 -19.13389 -18.62558 -17.66339 -16.97494 -16.82635 -16.57711 -16.18181 -16.08051 -15.72823 -15.55388 -15.45410 -15.34724 -15.00989 -14.72247 -14.70117 -14.37334 -14.16940 -13.74467 -13.64170 -13.54430 -13.51501 -12.82872 -12.70480 -12.66241 -12.62120 -12.45747 -12.24894 -12.14127 -12.08113 -11.96400 -11.89538 -11.73244 -11.44279 -11.38839 -11.36422 -11.12255 -10.89198 -10.80204 -10.25398 -9.68447 -9.47028 -9.07315 -8.38365 -5.31341 0.50651 1.19601 1.36294 1.58410 1.68159 1.79123 1.84727 2.18036 2.71866 2.93882 3.31849 3.40728 3.41389 3.62597 3.68662 3.74326 3.79573 3.90624 3.95147 4.04767 4.06127 4.15718 4.23851 4.26039 4.35082 4.36714 4.40258 4.47057 4.61667 4.62023 4.65100 4.69302 4.77492 4.78620 4.82241 4.82498 4.92402 4.95791 5.01926 5.09887 5.13728 5.16546 5.22466 5.27150 5.31675 5.36285 5.49261 5.59767 5.63730 5.83831 6.39680 6.49906 6.51897 7.12283 7.18415 8.03267 8.13961 9.13931 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.002869 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.349977 B = 9756.374190 C =10504.749137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.092 0.908 4 C 0.121 3.879 5 N -0.595 5.595 6 C 0.605 3.395 7 O -0.563 6.563 8 C -0.313 4.313 9 C 0.078 3.922 10 N -0.318 5.318 11 N -0.360 5.360 12 C 0.085 3.915 13 C 0.171 3.829 14 C -0.120 4.120 15 C -0.172 4.172 16 C -0.141 4.141 17 C 0.114 3.886 18 C -0.116 4.116 19 C -0.078 4.078 20 H 0.067 0.933 21 C 0.165 3.835 22 N -0.754 5.754 23 C -0.335 4.335 24 H 0.062 0.938 25 C -0.103 4.103 26 N -0.974 5.974 27 Si 1.126 2.874 28 H -0.292 1.292 29 H -0.279 1.279 30 H -0.278 1.278 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.205 0.795 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.146 0.854 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.014 0.986 50 H 0.017 0.983 51 H 0.362 0.638 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.535 -5.788 21.925 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.111 0.889 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.394 3.606 7 O -0.443 6.443 8 C -0.327 4.327 9 C -0.109 4.109 10 N -0.138 5.138 11 N -0.139 5.139 12 C -0.054 4.054 13 C 0.038 3.962 14 C -0.140 4.140 15 C -0.210 4.210 16 C -0.178 4.178 17 C -0.009 4.009 18 C -0.155 4.155 19 C -0.097 4.097 20 H 0.086 0.914 21 C 0.039 3.961 22 N -0.399 5.399 23 C -0.466 4.466 24 H 0.080 0.920 25 C -0.294 4.294 26 N -0.622 5.622 27 Si 0.951 3.049 28 H -0.218 1.218 29 H -0.205 1.205 30 H -0.205 1.205 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.222 0.778 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.164 0.836 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.032 0.968 50 H 0.035 0.965 51 H 0.194 0.806 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.711 -6.856 20.645 24.706 hybrid contribution 0.304 0.620 1.300 1.472 sum -11.407 -6.237 21.945 25.507 Atomic orbital electron populations 1.21843 0.94778 1.01533 1.01580 1.21409 0.96688 0.99751 0.93053 0.88945 1.21679 1.00259 0.79739 0.98380 1.47951 1.55478 1.11534 1.17733 1.17272 0.76154 0.84857 0.82304 1.90718 1.58461 1.65899 1.29253 1.19945 0.94001 0.94992 1.23811 1.24232 1.00885 0.88592 0.97146 1.77142 0.88039 1.23650 1.24975 1.48527 1.07691 1.05245 1.52475 1.22344 0.83089 0.94847 1.05141 1.20758 0.94947 0.84841 0.95635 1.20709 0.94856 0.91487 1.06950 1.23333 1.04408 0.92351 1.00894 1.23155 1.04462 0.99768 0.90446 1.21839 1.00884 0.95251 0.82920 1.21792 1.00758 0.95601 0.97311 1.21197 0.99892 0.94824 0.93748 0.91418 1.20771 0.95285 0.94557 0.85483 1.42578 1.57471 1.37448 1.02396 1.20375 1.26300 1.13180 0.86788 0.91960 1.27147 0.98165 0.97971 1.06137 1.70986 1.39860 1.26781 1.24594 0.82650 0.76011 0.74985 0.71272 1.21822 1.20493 1.20458 0.93203 0.91793 0.93139 0.90309 0.88925 0.77813 0.89039 0.87944 0.86927 0.83630 0.89016 0.86754 0.85914 0.88970 0.89928 0.89127 0.92254 0.92586 0.96816 0.96474 0.80568 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.21 71.98 0.59 -2.82 16 2 C -0.09 -2.17 2.72 -10.72 -0.03 -2.20 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.12 2.73 5.81 86.36 0.50 3.23 16 5 N -0.60 -14.16 2.41 -822.79 -1.98 -16.14 16 6 C 0.60 15.68 5.09 86.67 0.44 16.12 16 7 O -0.56 -16.69 12.56 -4.02 -0.05 -16.74 16 8 C -0.31 -7.69 4.89 -20.15 -0.10 -7.79 16 9 C 0.08 1.80 9.82 85.65 0.84 2.64 16 10 N -0.32 -7.73 12.50 -56.27 -0.70 -8.44 16 11 N -0.36 -7.30 3.98 -354.31 -1.41 -8.71 16 12 C 0.09 0.89 11.06 127.77 1.41 2.30 16 13 C 0.17 3.74 6.66 42.14 0.28 4.02 16 14 C -0.12 -2.06 5.83 -11.54 -0.07 -2.13 16 15 C -0.17 -3.36 9.48 30.59 0.29 -3.07 16 16 C -0.14 -2.49 9.61 30.59 0.29 -2.20 16 17 C 0.11 2.72 6.10 86.36 0.53 3.24 16 18 C -0.12 -3.44 4.91 30.67 0.15 -3.29 16 19 C -0.08 -2.35 1.96 -10.76 -0.02 -2.37 16 20 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 21 C 0.17 6.57 5.19 86.38 0.45 7.02 16 22 N -0.75 -38.08 5.32 -343.45 -1.83 -39.91 16 23 C -0.33 -19.08 9.99 84.03 0.84 -18.24 16 24 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 25 C -0.10 -6.00 5.50 84.86 0.47 -5.54 16 26 N -0.97 -60.92 13.70 21.65 0.30 -60.63 16 27 Si 1.13 52.18 29.92 68.60 2.05 54.23 16 28 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 29 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 30 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 31 H 0.05 1.29 5.23 -2.38 -0.01 1.28 16 32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.05 1.33 6.58 -2.39 -0.02 1.31 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 2.14 7.04 -2.39 -0.02 2.12 16 36 H 0.21 3.70 8.01 -2.91 -0.02 3.68 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.11 0.61 7.75 -2.39 -0.02 0.59 16 40 H 0.15 1.60 7.78 -2.39 -0.02 1.58 16 41 H 0.09 2.24 3.63 -2.38 -0.01 2.23 16 42 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.09 2.18 6.40 -2.39 -0.02 2.16 16 45 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.09 2.13 4.88 -2.38 -0.01 2.12 16 47 H 0.06 1.85 6.33 -2.39 -0.02 1.83 16 48 H 0.06 1.95 7.15 -2.39 -0.02 1.93 16 49 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 50 H 0.02 0.71 6.74 -2.39 -0.02 0.69 16 51 H 0.36 18.72 5.67 -92.71 -0.53 18.19 16 52 H 0.24 15.17 6.77 -92.71 -0.63 14.54 16 Total: -1.00 -74.91 393.73 3.81 -71.10 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: 0.56 Total: 36.30 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 6.87 Total: -11.07 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -5.62 Total: -133.83 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.05 Total: -16.74 kcal Atomic # 14 Polarization: 52.18 SS G_CDS: 2.05 Total: 54.23 kcal Total: -74.91 3.81 -71.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185786792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.964 kcal (2) G-P(sol) polarization free energy of solvation -74.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds