Wall clock time and date at job start Wed Apr 1 2020 04:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46313 * 2 1 4 4 C 1.53042 * 109.45960 * 240.02565 * 2 1 3 5 5 C 1.53193 * 109.31426 * 178.61505 * 4 2 1 6 6 N 1.46929 * 108.77249 * 54.63672 * 5 4 2 7 7 C 1.34777 * 120.62630 * 126.37176 * 6 5 4 8 8 O 1.21625 * 119.99572 * 186.89714 * 7 6 5 9 9 C 1.47323 * 120.00280 * 6.89847 * 7 6 5 10 10 C 1.36568 * 126.21313 * 187.05841 * 9 7 6 11 11 N 1.34869 * 106.78914 * 179.97438 * 10 9 7 12 12 C 1.36303 * 107.86194 * 0.07491 * 11 10 9 13 13 N 1.29794 * 108.92463 * 359.90193 * 12 11 10 14 14 C 1.51100 * 123.90294 * 179.88717 * 12 11 10 15 15 C 1.53394 * 108.19065 * 344.04345 * 14 12 11 16 16 C 1.53136 * 109.28725 * 48.93354 * 15 14 12 17 17 C 1.46579 * 127.50158 * 180.13204 * 11 10 9 18 18 C 1.46924 * 118.74095 * 306.64404 * 6 5 4 19 19 H 1.09005 * 109.58679 * 293.57272 * 18 6 5 20 20 C 1.52994 * 109.58773 * 173.14579 * 18 6 5 21 21 N 1.46499 * 109.47267 * 68.56134 * 20 18 6 22 22 C 1.36935 * 120.00021 * 174.77477 * 21 20 18 23 23 H 1.08001 * 120.00111 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99918 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99785 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99902 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47285 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47309 * 119.99610 * 26 24 22 29 29 H 1.48508 * 109.46841 * 239.99815 * 26 24 22 30 30 C 1.52762 * 109.00787 * 53.30854 * 18 6 5 31 31 H 1.09001 * 109.47470 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47068 * 299.97313 * 1 2 3 33 33 H 1.09000 * 109.47249 * 59.97396 * 1 2 3 34 34 H 1.09001 * 109.49300 * 58.66882 * 4 2 1 35 35 H 1.08993 * 109.52829 * 298.58545 * 4 2 1 36 36 H 1.09003 * 109.58321 * 294.85036 * 5 4 2 37 37 H 1.08992 * 109.70209 * 174.49665 * 5 4 2 38 38 H 1.08001 * 126.60453 * 359.96557 * 10 9 7 39 39 H 1.09001 * 109.71930 * 224.37310 * 14 12 11 40 40 H 1.09003 * 109.75780 * 103.74229 * 14 12 11 41 41 H 1.09006 * 109.50577 * 168.88515 * 15 14 12 42 42 H 1.08989 * 109.50786 * 288.97557 * 15 14 12 43 43 H 1.09002 * 109.46169 * 50.24286 * 16 15 14 44 44 H 1.08995 * 109.46120 * 170.20206 * 16 15 14 45 45 H 1.08996 * 109.58698 * 282.57300 * 17 11 10 46 46 H 1.09004 * 109.57980 * 42.98255 * 17 11 10 47 47 H 1.09004 * 109.47156 * 188.56421 * 20 18 6 48 48 H 1.09001 * 109.46971 * 308.56104 * 20 18 6 49 49 H 0.97002 * 119.99977 * 354.76828 * 21 20 18 50 50 H 0.97005 * 119.99861 * 179.97438 * 25 24 22 51 51 H 1.08994 * 109.56435 * 185.55445 * 30 18 6 52 52 H 1.08997 * 109.38349 * 65.51675 * 30 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6888 -1.2642 6 7 4.0678 -1.2489 0.0001 7 6 4.9613 -2.2579 0.0002 8 8 5.2699 -2.7968 1.0459 9 6 5.5643 -2.7081 -1.2664 10 6 6.3726 -3.7961 -1.4334 11 7 6.6980 -3.8425 -2.7415 12 6 6.0927 -2.7898 -3.3605 13 7 5.4170 -2.1159 -2.4807 14 6 6.2178 -2.4950 -4.8372 15 6 7.4067 -3.2939 -5.3860 16 6 7.2938 -4.7498 -4.9247 17 6 7.5455 -4.8304 -3.4156 18 6 3.5671 -0.6923 1.2643 19 1 3.9097 0.3369 1.3715 20 6 4.0829 -1.5322 2.4345 21 7 5.5307 -1.3503 2.5653 22 6 6.2005 -1.9216 3.6142 23 1 5.6614 -2.5059 4.3452 24 6 7.5723 -1.7488 3.7384 25 7 8.2291 -1.0363 2.8479 26 14 8.4861 -2.5287 5.1688 27 1 7.5260 -3.2736 6.0225 28 1 9.5150 -3.4642 4.6479 29 1 9.1436 -1.4678 5.9736 30 6 2.0398 -0.7207 1.2501 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3634 0.5142 -0.8897 34 1 1.6572 -0.2209 -2.1398 35 1 1.6978 -1.7557 -1.2388 36 1 3.9142 0.3407 -1.3674 37 1 3.9436 -1.2833 -2.0984 38 1 6.6901 -4.4863 -0.6659 39 1 6.3909 -1.4291 -4.9860 40 1 5.3046 -2.7945 -5.3514 41 1 7.3992 -3.2556 -6.4753 42 1 8.3366 -2.8650 -5.0130 43 1 6.2944 -5.1244 -5.1459 44 1 8.0326 -5.3553 -5.4496 45 1 8.5936 -4.6144 -3.2090 46 1 7.2985 -5.8294 -3.0563 47 1 3.5921 -1.2140 3.3543 48 1 3.8640 -2.5841 2.2511 49 1 6.0148 -0.8253 1.9089 50 1 9.1876 -0.9152 2.9349 51 1 1.6572 -0.2206 2.1398 52 1 1.6973 -1.7554 1.2388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263992051.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:14 Heat of formation + Delta-G solvation = 74.487593 kcal Electronic energy + Delta-G solvation = -32365.287493 eV Core-core repulsion = 28367.389399 eV Total energy + Delta-G solvation = -3997.898093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.24644 -39.71052 -37.12005 -36.54215 -34.26549 -33.66083 -33.08245 -31.82841 -29.85322 -29.61524 -28.55187 -27.93164 -25.32173 -24.70138 -23.19985 -22.82193 -22.31868 -22.19083 -20.70411 -19.77436 -19.10010 -18.56918 -17.10040 -16.63820 -16.08063 -15.88172 -15.27248 -14.80889 -14.61602 -14.46895 -14.30469 -14.16062 -13.95798 -13.88324 -13.69509 -13.40210 -13.21860 -12.95834 -12.90082 -12.70555 -12.53999 -11.98713 -11.88081 -11.72813 -11.50376 -11.45847 -11.40993 -11.35157 -11.28895 -10.85854 -10.68126 -10.64153 -10.60451 -10.41922 -10.10210 -9.71672 -9.60510 -9.39240 -9.15031 -8.64825 -8.23943 -8.09447 -7.74510 -6.36864 -5.44709 -2.63526 2.02888 2.70721 2.70884 3.59259 3.64168 3.66925 3.74593 4.09467 4.26785 4.27851 4.36431 4.40619 4.83028 4.88003 4.97998 4.99222 5.02471 5.09096 5.10049 5.14315 5.32850 5.36681 5.43371 5.50366 5.50964 5.61883 5.66930 5.75530 5.79466 5.81022 5.83154 5.86668 5.90062 5.94989 5.99286 6.18833 6.28100 6.28801 6.30336 6.32779 6.41572 6.43373 6.62333 6.73704 6.82224 6.98072 7.13105 7.29372 7.59560 7.97019 8.04392 8.34019 8.73248 9.24781 9.84259 10.46978 10.81431 11.79417 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007209 B = 0.004786 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3883.293281 B = 5848.856119 C = 9211.104730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.085 3.915 6 N -0.602 5.602 7 C 0.561 3.439 8 O -0.452 6.452 9 C -0.038 4.038 10 C 0.029 3.971 11 N -0.455 5.455 12 C 0.197 3.803 13 N -0.457 5.457 14 C -0.031 4.031 15 C -0.126 4.126 16 C -0.134 4.134 17 C 0.101 3.899 18 C 0.142 3.858 19 H 0.065 0.935 20 C 0.160 3.840 21 N -0.696 5.696 22 C -0.201 4.201 23 H 0.065 0.935 24 C -0.024 4.024 25 N -0.939 5.939 26 Si 0.899 3.101 27 H -0.283 1.283 28 H -0.297 1.297 29 H -0.297 1.297 30 C -0.119 4.119 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.137 0.863 38 H 0.186 0.814 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.012 0.988 48 H 0.042 0.958 49 H 0.380 0.620 50 H 0.247 0.753 51 H 0.070 0.930 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 -4.425 -21.296 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.164 4.164 5 C -0.038 4.038 6 N -0.338 5.338 7 C 0.346 3.654 8 O -0.321 6.321 9 C -0.166 4.166 10 C -0.108 4.108 11 N -0.138 5.138 12 C -0.066 4.066 13 N -0.178 5.178 14 C -0.070 4.070 15 C -0.164 4.164 16 C -0.171 4.171 17 C -0.021 4.021 18 C 0.039 3.961 19 H 0.083 0.917 20 C 0.033 3.967 21 N -0.339 5.339 22 C -0.333 4.333 23 H 0.083 0.917 24 C -0.218 4.218 25 N -0.590 5.590 26 Si 0.732 3.268 27 H -0.209 1.209 28 H -0.225 1.225 29 H -0.224 1.224 30 C -0.158 4.158 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.154 0.846 38 H 0.203 0.797 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.030 0.970 48 H 0.059 0.941 49 H 0.213 0.787 50 H 0.057 0.943 51 H 0.088 0.912 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.036 -4.262 -20.699 22.984 hybrid contribution 1.339 -0.867 0.762 1.768 sum -7.697 -5.129 -19.936 21.977 Atomic orbital electron populations 1.21816 0.95636 1.01477 1.01190 1.21139 0.95018 0.99624 0.95402 0.91335 1.21976 0.96800 1.00436 0.97162 1.22445 0.92382 1.00174 0.88785 1.47534 1.44125 1.35989 1.06162 1.16974 0.80081 0.82169 0.86158 1.91191 1.59236 1.53160 1.28522 1.20983 1.05493 0.97250 0.92916 1.22413 1.01106 1.02043 0.85250 1.45175 1.38056 1.22886 1.07731 1.23534 0.97957 0.88338 0.96740 1.70081 1.21171 1.27209 0.99376 1.20183 0.99295 1.01973 0.85547 1.21678 0.98805 0.94483 1.01479 1.21875 1.03673 0.98130 0.93441 1.22024 0.94961 0.91933 0.93159 1.21361 0.92410 0.97841 0.84512 0.91703 1.20913 0.86753 0.97220 0.91811 1.42284 1.01380 1.60482 1.29705 1.19224 0.90303 1.23134 1.00644 0.91700 1.24590 0.96399 1.01993 0.98861 1.69688 1.07082 1.45659 1.36571 0.86186 0.79899 0.78431 0.82279 1.20858 1.22470 1.22435 1.21872 0.95485 1.00980 0.97467 0.92950 0.92892 0.93068 0.91741 0.92228 0.93177 0.84578 0.79734 0.88676 0.89425 0.90049 0.90985 0.90626 0.89337 0.89534 0.89039 0.97010 0.94057 0.78655 0.94282 0.91183 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 2 C -0.09 -1.18 2.68 -90.58 -0.24 -1.43 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.62 5.36 -26.61 -0.14 -1.76 16 5 C 0.09 1.34 6.11 -3.71 -0.02 1.32 16 6 N -0.60 -11.49 2.98 -166.77 -0.50 -11.99 16 7 C 0.56 12.22 7.01 -12.57 -0.09 12.13 16 8 O -0.45 -11.61 10.67 5.26 0.06 -11.55 16 9 C -0.04 -0.72 6.67 -82.97 -0.55 -1.28 16 10 C 0.03 0.49 11.33 -16.82 -0.19 0.30 16 11 N -0.46 -5.93 3.11 -113.44 -0.35 -6.28 16 12 C 0.20 2.62 7.64 -154.64 -1.18 1.44 16 13 N -0.46 -7.55 7.76 -7.01 -0.05 -7.61 16 14 C -0.03 -0.26 6.33 -27.48 -0.17 -0.44 16 15 C -0.13 -0.78 5.95 -26.46 -0.16 -0.94 16 16 C -0.13 -0.77 5.93 -26.55 -0.16 -0.92 16 17 C 0.10 0.85 6.95 -3.89 -0.03 0.82 16 18 C 0.14 2.72 2.92 -67.82 -0.20 2.52 16 19 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 20 C 0.16 3.73 4.86 -4.05 -0.02 3.71 16 21 N -0.70 -19.64 3.21 -59.91 -0.19 -19.83 16 22 C -0.20 -6.16 9.71 -15.06 -0.15 -6.30 16 23 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 24 C -0.02 -0.76 5.50 -17.43 -0.10 -0.85 16 25 N -0.94 -30.75 13.06 55.49 0.72 -30.02 16 26 Si 0.90 24.23 29.55 -169.99 -5.02 19.21 16 27 H -0.28 -7.40 7.11 56.52 0.40 -6.99 16 28 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 29 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 30 C -0.12 -1.79 4.62 -26.83 -0.12 -1.91 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.14 2.19 4.09 -62.00 -0.25 1.94 16 38 H 0.19 3.04 8.06 -52.49 -0.42 2.62 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.51 8.12 -51.94 -0.42 0.08 16 43 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 44 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.01 0.28 8.13 -51.93 -0.42 -0.14 16 48 H 0.04 1.03 6.35 -51.93 -0.33 0.70 16 49 H 0.38 11.53 6.99 -40.82 -0.29 11.24 16 50 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 51 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 52 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 396.69 15.07 5.98 5.98 Total: -1.00 -37.51 396.69 -11.41 -48.92 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.87 Total: 7.94 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -3.18 Total: 5.23 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -0.37 Total: -75.72 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.06 Total: -11.55 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -5.02 Total: 19.21 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.51 -11.41 -48.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263992051.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.408 kcal (2) G-P(sol) polarization free energy of solvation -37.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds